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LOCUS XM_070218247 3813 bp mRNA linear INV 09-DEC-2024 X6, mRNA. ACCESSION XM_070218247 VERSION XM_070218247.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3813 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3813 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108063859" CDS 337..2601 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X3" /protein_id="XP_070074348.1" /db_xref="GeneID:108063859" /translation="MHFFLEDFLQVHLLKIYDKMQRCNQNSSSSNINTTSNTSGSSNS NKRCPPKYAGNNLAATNGMMAYQQHATATAATLQHGSNKTRKSRYNSNGNKQQQQFGN IQKRNGIGIAGLAGSESSSSPSKTTWLERGYGHRLANSSCIEDKFLGQHNPGHRNSTS SEATSEDIDSSREHLNKPKGSSSGGGGSSCNNHVAGGNKSRSKRQAKSCGQQIRQNPD QKPAGATASKAKQANGKWRQQQPNPNGNANPNQQQQQQQQQKRSNKKVQGKCSSIAGN AGSNGAKHAGSHPRKMATCDSSSSSALSSPTSSPGSSPQANGSRKRIERSLMPGAALE WRRERERGRQNANFLVPPLRQYEQLDLDDRSLVQQLRRHVIDHHLLRVYGFPVESVVH EGAIEIFKCLPHMSFAAALAETVINCHDGLSSQQAEEVATSSDSGNSSPRSLDSESSG EWSGSECESSNSSSSSSSADGDGELGLELKYCQYVQVERSLAKPCARCKRHFLVDELT GEYLSREECHYHSGKYQRYYDGVCHGRWTCCNEGEESSPGCCQGDRHVWTGSVVGVNG PYYDFVRTQHRDQSEEQSPAVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPE CDIVDYNTRYSGISERDLRSGAKSLAEVQRDLLQLIAADTILVGHGLDNDLRALRLVH NTLIDTSISFPHCSGFPYRRALRHLTKVHLKREIQSGDGTTGHSSFEDARACMELMLW RIGREQDPTWSWDD" misc_feature <1876..1986 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 2098..2553 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(2107..2118,2122..2124,2341..2346,2350..2358, 2509..2511,2524..2526) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(2107..2118,2122..2124,2341..2346,2350..2355, 2509..2511,2524..2526) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(2107..2109,2113..2115,2356..2358,2509..2511, 2524..2526) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 3813 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accttggcag ttgacgtagt tgctgtggaa tattattatc aacatgttat cggaacagtt 61 caagacactt tcaaaacaaa caaaacattt gcacaaaagt atcaaaattt tcgccgttgg 121 tttcgcttct tttcgtcttt agtgaacact accaccatta cactatctcc actaaatcga 181 atcgaatcga gcttaatctt ttctaatcct tggaaaagcg gggagaagcg caaaaattgc 241 aaacattaat gaaaagaaaa ttaccaaaac aaagcaaagt ttttgttttc cgaaacctgc 301 aattaattcg aacgcgttta tgtctgcagc ggtgcgatgc atttctttct cgaagatttc 361 ttgcaagtac atctacttaa gatttatgac aaaatgcagc gttgcaacca gaacagcagc 421 agcagcaaca tcaacacgac cagcaacacc agcggcagca gcaacagcaa caaacgctgc 481 cctccgaagt acgccggcaa caacctagca gcaactaacg gcatgatggc ctaccagcaa 541 catgcaacag ccacggcagc aacattgcag cacggcagca acaagactcg caagagtcgc 601 tacaacagca acggcaacaa gcagcaacag cagtttggga atattcagaa gcggaatggc 661 atcggaatcg ctggcctcgc cggaagtgag tcctcgtcct ccccctcgaa gaccacctgg 721 ttggagagag gctacggaca tcggctggcc aattcttcat gcatcgaaga caaattcctg 781 ggccagcaca atccggggca tcggaatagc accagcagcg aggcgaccag cgaggacatc 841 gactccagca gggagcacct gaacaagccc aagggcagtt cgagcggagg aggcggaagc 901 agttgcaaca accatgtggc cggcggcaac aagagccgct cgaagcgcca ggcgaagtcg 961 tgtggccagc agatccgcca gaatcccgac cagaagccag cgggagccac tgcctccaag 1021 gccaagcagg ccaacggcaa gtggcgccag cagcagccca atcccaatgg caatgccaat 1081 cccaaccagc agcagcagca acagcaacag cagaagcgca gcaacaagaa agtgcaggga 1141 aagtgcagca gcatcgccgg aaatgccggc agcaacggcg ccaagcacgc cggcagccat 1201 ccccgcaaga tggccacctg cgacagcagc tcctcttcgg ccctcagctc gcccaccagt 1261 tcgcccggca gctccccgca ggccaacggc agccggaagc ggatcgagcg ctccctgatg 1321 ccgggagccg ctttggagtg gcggcgggag cgggaacgcg gccgccagaa cgccaacttc 1381 ctggtgcccc cgctccggca gtacgagcag ctggacctgg acgaccggag cctggtgcag 1441 cagctgcggc gccacgtcat cgaccaccac ctgctgcgcg tctacggctt ccccgtggag 1501 tccgtcgtcc acgagggcgc catcgagatc ttcaagtgcc tgccgcacat gagcttcgcc 1561 gccgccctgg cggaaacggt gatcaactgc cacgacgggc tgagcagcca gcaggcggag 1621 gaggtggcca cctccagtga ctcgggcaac agctcgcccc gctccctgga ctcggagtcc 1681 tccggcgagt ggagcggcag cgagtgcgag tcctccaact cctcctcgtc ctcgtcctcc 1741 gccgatggcg atggcgaact gggtctcgag ctcaagtact gccagtacgt ccaggtggag 1801 cggagcctgg ccaagccgtg cgcccgctgc aagcggcact tcctggtgga cgagctgacc 1861 ggcgagtacc tgagccgcga ggagtgccac taccactcgg gcaagtacca gcgctactac 1921 gacggcgtct gccacggccg ctggacgtgc tgcaacgagg gcgaggagag ctcgccggga 1981 tgctgccagg gcgaccggca cgtgtggacc ggctcggtgg tgggcgtcaa tgggccgtac 2041 tatgattttg tgcgcaccca gcacagggat cagtcggaag agcaatcccc cgccgtctac 2101 gccctcgact gcgagatgag ctacacgggc cgcggtctgg acgtgaccaa ggtctcgctg 2161 gtggccctca acgggcagct ggtgtacgag cacttcgtgc ggcccgagtg cgacatcgtg 2221 gactacaaca cccggtactc gggcatctcg gagcgggacc tgcgctccgg cgccaagagc 2281 ctggccgagg tgcagcggga tctgctccag ctgatcgccg ccgacacgat cctcgtcggc 2341 cacgggctgg acaacgacct gcgggccctg cggctggtgc acaacaccct gatcgacacc 2401 tctatcagct tcccgcactg cagcggcttc ccctaccgcc gggccctgcg ccacctgacc 2461 aaggtccacc tgaagcggga gatccagagc ggcgacggga ccacgggaca cagcagcttc 2521 gaggacgcga gggcctgcat ggagctgatg ctctggcgga tcggccggga acaggatccc 2581 acatggagct gggacgattg aggaggggga tctatcgggg gatctatcga ggggccagca 2641 agtactttta gtcgttagga gatcgcctag tttgtaccgt attcaagaaa caaaacacaa 2701 tcccaaaatc tcagctgggg cgcccacctg gcagtcggtt tctatgccac cgatctatac 2761 tatactgtgt agatctataa agacccattg ccaggtgtcg gctcagcgta tatcatatac 2821 acctatatcg agaaaatcga gtaaatcgag caaatcgagt aaatcgcaaa ttggaaaaat 2881 tacaaaaatg gcaaaaaaaa aatagagagg ataataatat ttatatgcga tacataaggt 2941 acattttgta agcgtatatt tatagagata aaatagaact ttaatctaca tatgtatata 3001 cacatattgt tttttttttc ttgattaatt tcgaaccacg agaaaatgta ctgaagtttt 3061 agctgtgatg tttttttcac tttctcacat atttacacga caaaaggaaa atgaaaagta 3121 aaagcaaaca aaaaaagaga agaaaaatac aaaaatatat acatacgcat acattatttt 3181 tttaagagca cagaagaaag gcaatccaaa tactttttaa tttcgaccaa aactttcaac 3241 taaatcactc catttatcat aatctaccat taggtttcgt ttcgttttat tttttcccca 3301 aaccaaacca tttcttttat tattttacga atatacaaat catctcatac gcaaacggaa 3361 gaagaaaaaa gtaaagttta actttaacta ctttatacac tatgcataaa cgtaagttag 3421 gttaatcctg tgtttttttc caaaactttt tgattattta tttaacgaat tcgcgcgaca 3481 agttcattga aaacttcttc aagtgtttaa tttttcacat tgaactccat tcttaggcta 3541 agctatatat ttgttttctc tcgagaaact atcgactatt aaaaccacta ttccttgact 3601 ccgatttcat aagacgagac gaggaatact ttattcgaaa atcgatgttc ctagcagcat 3661 aagtttcagc acaagtacac tgcaaaaagc ggctgttttt atattgaacg gaaagagaaa 3721 gaagagaaga gtaatgcaaa tgcacaacga caaaatttaa agagaataaa agaaacaaag 3781 atttgtttaa aactaaatat cacctcaagc aaa