Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_070218246 3893 bp mRNA linear INV 09-DEC-2024 X5, mRNA. ACCESSION XM_070218246 VERSION XM_070218246.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3893 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3893 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108063859" CDS 417..2681 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X3" /protein_id="XP_070074347.1" /db_xref="GeneID:108063859" /translation="MHFFLEDFLQVHLLKIYDKMQRCNQNSSSSNINTTSNTSGSSNS NKRCPPKYAGNNLAATNGMMAYQQHATATAATLQHGSNKTRKSRYNSNGNKQQQQFGN IQKRNGIGIAGLAGSESSSSPSKTTWLERGYGHRLANSSCIEDKFLGQHNPGHRNSTS SEATSEDIDSSREHLNKPKGSSSGGGGSSCNNHVAGGNKSRSKRQAKSCGQQIRQNPD QKPAGATASKAKQANGKWRQQQPNPNGNANPNQQQQQQQQQKRSNKKVQGKCSSIAGN AGSNGAKHAGSHPRKMATCDSSSSSALSSPTSSPGSSPQANGSRKRIERSLMPGAALE WRRERERGRQNANFLVPPLRQYEQLDLDDRSLVQQLRRHVIDHHLLRVYGFPVESVVH EGAIEIFKCLPHMSFAAALAETVINCHDGLSSQQAEEVATSSDSGNSSPRSLDSESSG EWSGSECESSNSSSSSSSADGDGELGLELKYCQYVQVERSLAKPCARCKRHFLVDELT GEYLSREECHYHSGKYQRYYDGVCHGRWTCCNEGEESSPGCCQGDRHVWTGSVVGVNG PYYDFVRTQHRDQSEEQSPAVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPE CDIVDYNTRYSGISERDLRSGAKSLAEVQRDLLQLIAADTILVGHGLDNDLRALRLVH NTLIDTSISFPHCSGFPYRRALRHLTKVHLKREIQSGDGTTGHSSFEDARACMELMLW RIGREQDPTWSWDD" misc_feature <1956..2066 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 2178..2633 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(2187..2198,2202..2204,2421..2426,2430..2438, 2589..2591,2604..2606) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(2187..2198,2202..2204,2421..2426,2430..2435, 2589..2591,2604..2606) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(2187..2189,2193..2195,2436..2438,2589..2591, 2604..2606) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 3893 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accttggcag ttgacgtagt tgctgtggaa tattattatc aacatgttat cggaacagtt 61 caagacactt tcaaaacaaa caaaacattt gcacaaaagt atcaaaattt tcgccgttgg 121 tttcgcttct tttcgtcttt agtgaacact accaccatta cactatctcc actaaatcga 181 atcgaatcga gcttaatctt ttctaatcct tggaaaagcg gggagaagcg caaaaattgc 241 aaacattaat gaaaagttgg ctttcaactg caagtgcagg cggtttgcta agggttcccg 301 tataaaatac aataaacaac aaaccatcaa caacagaaaa ttaccaaaac aaagcaaagt 361 ttttgttttc cgaaacctgc aattaattcg aacgcgttta tgtctgcagc ggtgcgatgc 421 atttctttct cgaagatttc ttgcaagtac atctacttaa gatttatgac aaaatgcagc 481 gttgcaacca gaacagcagc agcagcaaca tcaacacgac cagcaacacc agcggcagca 541 gcaacagcaa caaacgctgc cctccgaagt acgccggcaa caacctagca gcaactaacg 601 gcatgatggc ctaccagcaa catgcaacag ccacggcagc aacattgcag cacggcagca 661 acaagactcg caagagtcgc tacaacagca acggcaacaa gcagcaacag cagtttggga 721 atattcagaa gcggaatggc atcggaatcg ctggcctcgc cggaagtgag tcctcgtcct 781 ccccctcgaa gaccacctgg ttggagagag gctacggaca tcggctggcc aattcttcat 841 gcatcgaaga caaattcctg ggccagcaca atccggggca tcggaatagc accagcagcg 901 aggcgaccag cgaggacatc gactccagca gggagcacct gaacaagccc aagggcagtt 961 cgagcggagg aggcggaagc agttgcaaca accatgtggc cggcggcaac aagagccgct 1021 cgaagcgcca ggcgaagtcg tgtggccagc agatccgcca gaatcccgac cagaagccag 1081 cgggagccac tgcctccaag gccaagcagg ccaacggcaa gtggcgccag cagcagccca 1141 atcccaatgg caatgccaat cccaaccagc agcagcagca acagcaacag cagaagcgca 1201 gcaacaagaa agtgcaggga aagtgcagca gcatcgccgg aaatgccggc agcaacggcg 1261 ccaagcacgc cggcagccat ccccgcaaga tggccacctg cgacagcagc tcctcttcgg 1321 ccctcagctc gcccaccagt tcgcccggca gctccccgca ggccaacggc agccggaagc 1381 ggatcgagcg ctccctgatg ccgggagccg ctttggagtg gcggcgggag cgggaacgcg 1441 gccgccagaa cgccaacttc ctggtgcccc cgctccggca gtacgagcag ctggacctgg 1501 acgaccggag cctggtgcag cagctgcggc gccacgtcat cgaccaccac ctgctgcgcg 1561 tctacggctt ccccgtggag tccgtcgtcc acgagggcgc catcgagatc ttcaagtgcc 1621 tgccgcacat gagcttcgcc gccgccctgg cggaaacggt gatcaactgc cacgacgggc 1681 tgagcagcca gcaggcggag gaggtggcca cctccagtga ctcgggcaac agctcgcccc 1741 gctccctgga ctcggagtcc tccggcgagt ggagcggcag cgagtgcgag tcctccaact 1801 cctcctcgtc ctcgtcctcc gccgatggcg atggcgaact gggtctcgag ctcaagtact 1861 gccagtacgt ccaggtggag cggagcctgg ccaagccgtg cgcccgctgc aagcggcact 1921 tcctggtgga cgagctgacc ggcgagtacc tgagccgcga ggagtgccac taccactcgg 1981 gcaagtacca gcgctactac gacggcgtct gccacggccg ctggacgtgc tgcaacgagg 2041 gcgaggagag ctcgccggga tgctgccagg gcgaccggca cgtgtggacc ggctcggtgg 2101 tgggcgtcaa tgggccgtac tatgattttg tgcgcaccca gcacagggat cagtcggaag 2161 agcaatcccc cgccgtctac gccctcgact gcgagatgag ctacacgggc cgcggtctgg 2221 acgtgaccaa ggtctcgctg gtggccctca acgggcagct ggtgtacgag cacttcgtgc 2281 ggcccgagtg cgacatcgtg gactacaaca cccggtactc gggcatctcg gagcgggacc 2341 tgcgctccgg cgccaagagc ctggccgagg tgcagcggga tctgctccag ctgatcgccg 2401 ccgacacgat cctcgtcggc cacgggctgg acaacgacct gcgggccctg cggctggtgc 2461 acaacaccct gatcgacacc tctatcagct tcccgcactg cagcggcttc ccctaccgcc 2521 gggccctgcg ccacctgacc aaggtccacc tgaagcggga gatccagagc ggcgacggga 2581 ccacgggaca cagcagcttc gaggacgcga gggcctgcat ggagctgatg ctctggcgga 2641 tcggccggga acaggatccc acatggagct gggacgattg aggaggggga tctatcgggg 2701 gatctatcga ggggccagca agtactttta gtcgttagga gatcgcctag tttgtaccgt 2761 attcaagaaa caaaacacaa tcccaaaatc tcagctgggg cgcccacctg gcagtcggtt 2821 tctatgccac cgatctatac tatactgtgt agatctataa agacccattg ccaggtgtcg 2881 gctcagcgta tatcatatac acctatatcg agaaaatcga gtaaatcgag caaatcgagt 2941 aaatcgcaaa ttggaaaaat tacaaaaatg gcaaaaaaaa aatagagagg ataataatat 3001 ttatatgcga tacataaggt acattttgta agcgtatatt tatagagata aaatagaact 3061 ttaatctaca tatgtatata cacatattgt tttttttttc ttgattaatt tcgaaccacg 3121 agaaaatgta ctgaagtttt agctgtgatg tttttttcac tttctcacat atttacacga 3181 caaaaggaaa atgaaaagta aaagcaaaca aaaaaagaga agaaaaatac aaaaatatat 3241 acatacgcat acattatttt tttaagagca cagaagaaag gcaatccaaa tactttttaa 3301 tttcgaccaa aactttcaac taaatcactc catttatcat aatctaccat taggtttcgt 3361 ttcgttttat tttttcccca aaccaaacca tttcttttat tattttacga atatacaaat 3421 catctcatac gcaaacggaa gaagaaaaaa gtaaagttta actttaacta ctttatacac 3481 tatgcataaa cgtaagttag gttaatcctg tgtttttttc caaaactttt tgattattta 3541 tttaacgaat tcgcgcgaca agttcattga aaacttcttc aagtgtttaa tttttcacat 3601 tgaactccat tcttaggcta agctatatat ttgttttctc tcgagaaact atcgactatt 3661 aaaaccacta ttccttgact ccgatttcat aagacgagac gaggaatact ttattcgaaa 3721 atcgatgttc ctagcagcat aagtttcagc acaagtacac tgcaaaaagc ggctgttttt 3781 atattgaacg gaaagagaaa gaagagaaga gtaatgcaaa tgcacaacga caaaatttaa 3841 agagaataaa agaaacaaag atttgtttaa aactaaatat cacctcaagc aaa