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LOCUS XM_070218245 3938 bp mRNA linear INV 09-DEC-2024 X4, mRNA. ACCESSION XM_070218245 VERSION XM_070218245.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3938 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3938 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108063859" CDS 462..2726 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X3" /protein_id="XP_070074346.1" /db_xref="GeneID:108063859" /translation="MHFFLEDFLQVHLLKIYDKMQRCNQNSSSSNINTTSNTSGSSNS NKRCPPKYAGNNLAATNGMMAYQQHATATAATLQHGSNKTRKSRYNSNGNKQQQQFGN IQKRNGIGIAGLAGSESSSSPSKTTWLERGYGHRLANSSCIEDKFLGQHNPGHRNSTS SEATSEDIDSSREHLNKPKGSSSGGGGSSCNNHVAGGNKSRSKRQAKSCGQQIRQNPD QKPAGATASKAKQANGKWRQQQPNPNGNANPNQQQQQQQQQKRSNKKVQGKCSSIAGN AGSNGAKHAGSHPRKMATCDSSSSSALSSPTSSPGSSPQANGSRKRIERSLMPGAALE WRRERERGRQNANFLVPPLRQYEQLDLDDRSLVQQLRRHVIDHHLLRVYGFPVESVVH EGAIEIFKCLPHMSFAAALAETVINCHDGLSSQQAEEVATSSDSGNSSPRSLDSESSG EWSGSECESSNSSSSSSSADGDGELGLELKYCQYVQVERSLAKPCARCKRHFLVDELT GEYLSREECHYHSGKYQRYYDGVCHGRWTCCNEGEESSPGCCQGDRHVWTGSVVGVNG PYYDFVRTQHRDQSEEQSPAVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEHFVRPE CDIVDYNTRYSGISERDLRSGAKSLAEVQRDLLQLIAADTILVGHGLDNDLRALRLVH NTLIDTSISFPHCSGFPYRRALRHLTKVHLKREIQSGDGTTGHSSFEDARACMELMLW RIGREQDPTWSWDD" misc_feature <2001..2111 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 2223..2678 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(2232..2243,2247..2249,2466..2471,2475..2483, 2634..2636,2649..2651) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(2232..2243,2247..2249,2466..2471,2475..2480, 2634..2636,2649..2651) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(2232..2234,2238..2240,2481..2483,2634..2636, 2649..2651) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 3938 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accttggcag ttgacgtagt tgctgtggaa tattattatc aacatgttat cggaacagtt 61 caagacactt tcaaaacaaa caaaacattt gcacaaaagt atcaaaattt tcgccgttgg 121 tttcgcttct tttcgtcttt agtgaacact accaccatta cactatctcc actaaatcga 181 atcgaatcga gcttaatctt ttctaatcct tggaaaagcg gggagaagcg caaaaattgc 241 aaacattaat gaaaagcttt ttgtgtttat atcgcgagcg ttcgctaatc gcgccattta 301 gttggctttc aactgcaagt gcaggcggtt tgctaagggt tcccgtataa aatacaataa 361 acaacaaacc atcaacaaca gaaaattacc aaaacaaagc aaagtttttg ttttccgaaa 421 cctgcaatta attcgaacgc gtttatgtct gcagcggtgc gatgcatttc tttctcgaag 481 atttcttgca agtacatcta cttaagattt atgacaaaat gcagcgttgc aaccagaaca 541 gcagcagcag caacatcaac acgaccagca acaccagcgg cagcagcaac agcaacaaac 601 gctgccctcc gaagtacgcc ggcaacaacc tagcagcaac taacggcatg atggcctacc 661 agcaacatgc aacagccacg gcagcaacat tgcagcacgg cagcaacaag actcgcaaga 721 gtcgctacaa cagcaacggc aacaagcagc aacagcagtt tgggaatatt cagaagcgga 781 atggcatcgg aatcgctggc ctcgccggaa gtgagtcctc gtcctccccc tcgaagacca 841 cctggttgga gagaggctac ggacatcggc tggccaattc ttcatgcatc gaagacaaat 901 tcctgggcca gcacaatccg gggcatcgga atagcaccag cagcgaggcg accagcgagg 961 acatcgactc cagcagggag cacctgaaca agcccaaggg cagttcgagc ggaggaggcg 1021 gaagcagttg caacaaccat gtggccggcg gcaacaagag ccgctcgaag cgccaggcga 1081 agtcgtgtgg ccagcagatc cgccagaatc ccgaccagaa gccagcggga gccactgcct 1141 ccaaggccaa gcaggccaac ggcaagtggc gccagcagca gcccaatccc aatggcaatg 1201 ccaatcccaa ccagcagcag cagcaacagc aacagcagaa gcgcagcaac aagaaagtgc 1261 agggaaagtg cagcagcatc gccggaaatg ccggcagcaa cggcgccaag cacgccggca 1321 gccatccccg caagatggcc acctgcgaca gcagctcctc ttcggccctc agctcgccca 1381 ccagttcgcc cggcagctcc ccgcaggcca acggcagccg gaagcggatc gagcgctccc 1441 tgatgccggg agccgctttg gagtggcggc gggagcggga acgcggccgc cagaacgcca 1501 acttcctggt gcccccgctc cggcagtacg agcagctgga cctggacgac cggagcctgg 1561 tgcagcagct gcggcgccac gtcatcgacc accacctgct gcgcgtctac ggcttccccg 1621 tggagtccgt cgtccacgag ggcgccatcg agatcttcaa gtgcctgccg cacatgagct 1681 tcgccgccgc cctggcggaa acggtgatca actgccacga cgggctgagc agccagcagg 1741 cggaggaggt ggccacctcc agtgactcgg gcaacagctc gccccgctcc ctggactcgg 1801 agtcctccgg cgagtggagc ggcagcgagt gcgagtcctc caactcctcc tcgtcctcgt 1861 cctccgccga tggcgatggc gaactgggtc tcgagctcaa gtactgccag tacgtccagg 1921 tggagcggag cctggccaag ccgtgcgccc gctgcaagcg gcacttcctg gtggacgagc 1981 tgaccggcga gtacctgagc cgcgaggagt gccactacca ctcgggcaag taccagcgct 2041 actacgacgg cgtctgccac ggccgctgga cgtgctgcaa cgagggcgag gagagctcgc 2101 cgggatgctg ccagggcgac cggcacgtgt ggaccggctc ggtggtgggc gtcaatgggc 2161 cgtactatga ttttgtgcgc acccagcaca gggatcagtc ggaagagcaa tcccccgccg 2221 tctacgccct cgactgcgag atgagctaca cgggccgcgg tctggacgtg accaaggtct 2281 cgctggtggc cctcaacggg cagctggtgt acgagcactt cgtgcggccc gagtgcgaca 2341 tcgtggacta caacacccgg tactcgggca tctcggagcg ggacctgcgc tccggcgcca 2401 agagcctggc cgaggtgcag cgggatctgc tccagctgat cgccgccgac acgatcctcg 2461 tcggccacgg gctggacaac gacctgcggg ccctgcggct ggtgcacaac accctgatcg 2521 acacctctat cagcttcccg cactgcagcg gcttccccta ccgccgggcc ctgcgccacc 2581 tgaccaaggt ccacctgaag cgggagatcc agagcggcga cgggaccacg ggacacagca 2641 gcttcgagga cgcgagggcc tgcatggagc tgatgctctg gcggatcggc cgggaacagg 2701 atcccacatg gagctgggac gattgaggag ggggatctat cgggggatct atcgaggggc 2761 cagcaagtac ttttagtcgt taggagatcg cctagtttgt accgtattca agaaacaaaa 2821 cacaatccca aaatctcagc tggggcgccc acctggcagt cggtttctat gccaccgatc 2881 tatactatac tgtgtagatc tataaagacc cattgccagg tgtcggctca gcgtatatca 2941 tatacaccta tatcgagaaa atcgagtaaa tcgagcaaat cgagtaaatc gcaaattgga 3001 aaaattacaa aaatggcaaa aaaaaaatag agaggataat aatatttata tgcgatacat 3061 aaggtacatt ttgtaagcgt atatttatag agataaaata gaactttaat ctacatatgt 3121 atatacacat attgtttttt ttttcttgat taatttcgaa ccacgagaaa atgtactgaa 3181 gttttagctg tgatgttttt ttcactttct cacatattta cacgacaaaa ggaaaatgaa 3241 aagtaaaagc aaacaaaaaa agagaagaaa aatacaaaaa tatatacata cgcatacatt 3301 atttttttaa gagcacagaa gaaaggcaat ccaaatactt tttaatttcg accaaaactt 3361 tcaactaaat cactccattt atcataatct accattaggt ttcgtttcgt tttatttttt 3421 ccccaaacca aaccatttct tttattattt tacgaatata caaatcatct catacgcaaa 3481 cggaagaaga aaaaagtaaa gtttaacttt aactacttta tacactatgc ataaacgtaa 3541 gttaggttaa tcctgtgttt ttttccaaaa ctttttgatt atttatttaa cgaattcgcg 3601 cgacaagttc attgaaaact tcttcaagtg tttaattttt cacattgaac tccattctta 3661 ggctaagcta tatatttgtt ttctctcgag aaactatcga ctattaaaac cactattcct 3721 tgactccgat ttcataagac gagacgagga atactttatt cgaaaatcga tgttcctagc 3781 agcataagtt tcagcacaag tacactgcaa aaagcggctg tttttatatt gaacggaaag 3841 agaaagaaga gaagagtaat gcaaatgcac aacgacaaaa tttaaagaga ataaaagaaa 3901 caaagatttg tttaaaacta aatatcacct caagcaaa