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LOCUS XM_070218244 3740 bp mRNA linear INV 09-DEC-2024 X2, mRNA. ACCESSION XM_070218244 VERSION XM_070218244.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3740 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3740 /gene="prage" /note="prage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:108063859" CDS 249..2528 /gene="prage" /codon_start=1 /product="uncharacterized protein prage isoform X2" /protein_id="XP_070074345.1" /db_xref="GeneID:108063859" /translation="MKSGAMHFFLEDFLQVHLLKIYDKMQRCNQNSSSSNINTTSNTS GSSNSNKRCPPKYAGNNLAATNGMMAYQQHATATAATLQHGSNKTRKSRYNSNGNKQQ QQFGNIQKRNGIGIAGLAGSESSSSPSKTTWLERGYGHRLANSSCIEDKFLGQHNPGH RNSTSSEATSEDIDSSREHLNKPKGSSSGGGGSSCNNHVAGGNKSRSKRQAKSCGQQI RQNPDQKPAGATASKAKQANGKWRQQQPNPNGNANPNQQQQQQQQQKRSNKKVQGKCS SIAGNAGSNGAKHAGSHPRKMATCDSSSSSALSSPTSSPGSSPQANGSRKRIERSLMP GAALEWRRERERGRQNANFLVPPLRQYEQLDLDDRSLVQQLRRHVIDHHLLRVYGFPV ESVVHEGAIEIFKCLPHMSFAAALAETVINCHDGLSSQQAEEVATSSDSGNSSPRSLD SESSGEWSGSECESSNSSSSSSSADGDGELGLELKYCQYVQVERSLAKPCARCKRHFL VDELTGEYLSREECHYHSGKYQRYYDGVCHGRWTCCNEGEESSPGCCQGDRHVWTGSV VGVNGPYYDFVRTQHRDQSEEQSPAVYALDCEMSYTGRGLDVTKVSLVALNGQLVYEH FVRPECDIVDYNTRYSGISERDLRSGAKSLAEVQRDLLQLIAADTILVGHGLDNDLRA LRLVHNTLIDTSISFPHCSGFPYRRALRHLTKVHLKREIQSGDGTTGHSSFEDARACM ELMLWRIGREQDPTWSWDD" misc_feature <1803..1913 /gene="prage" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 2025..2480 /gene="prage" /note="DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins; Region: REX1_like; cd06145" /db_xref="CDD:99848" misc_feature order(2034..2045,2049..2051,2268..2273,2277..2285, 2436..2438,2451..2453) /gene="prage" /note="active site" /db_xref="CDD:99848" misc_feature order(2034..2045,2049..2051,2268..2273,2277..2282, 2436..2438,2451..2453) /gene="prage" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99848" misc_feature order(2034..2036,2040..2042,2283..2285,2436..2438, 2451..2453) /gene="prage" /note="catalytic site [active]" /db_xref="CDD:99848" polyA_site 3740 /gene="prage" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accttggcag ttgacgtagt tgctgtggaa tattattatc aacatgttat cggaacagtt 61 caagacactt tcaaaacaaa caaaacattt gcacaaaagt atcaaaattt tcgccgttgg 121 tttcgcttct tttcgtcttt agtgaacact accaccatta cactatctcc actaaatcga 181 atcgaatcga gcttaatctt ttctaatcct tggaaaagcg gggagaagcg caaaaattgc 241 aaacattaat gaaaagcggt gcgatgcatt tctttctcga agatttcttg caagtacatc 301 tacttaagat ttatgacaaa atgcagcgtt gcaaccagaa cagcagcagc agcaacatca 361 acacgaccag caacaccagc ggcagcagca acagcaacaa acgctgccct ccgaagtacg 421 ccggcaacaa cctagcagca actaacggca tgatggccta ccagcaacat gcaacagcca 481 cggcagcaac attgcagcac ggcagcaaca agactcgcaa gagtcgctac aacagcaacg 541 gcaacaagca gcaacagcag tttgggaata ttcagaagcg gaatggcatc ggaatcgctg 601 gcctcgccgg aagtgagtcc tcgtcctccc cctcgaagac cacctggttg gagagaggct 661 acggacatcg gctggccaat tcttcatgca tcgaagacaa attcctgggc cagcacaatc 721 cggggcatcg gaatagcacc agcagcgagg cgaccagcga ggacatcgac tccagcaggg 781 agcacctgaa caagcccaag ggcagttcga gcggaggagg cggaagcagt tgcaacaacc 841 atgtggccgg cggcaacaag agccgctcga agcgccaggc gaagtcgtgt ggccagcaga 901 tccgccagaa tcccgaccag aagccagcgg gagccactgc ctccaaggcc aagcaggcca 961 acggcaagtg gcgccagcag cagcccaatc ccaatggcaa tgccaatccc aaccagcagc 1021 agcagcaaca gcaacagcag aagcgcagca acaagaaagt gcagggaaag tgcagcagca 1081 tcgccggaaa tgccggcagc aacggcgcca agcacgccgg cagccatccc cgcaagatgg 1141 ccacctgcga cagcagctcc tcttcggccc tcagctcgcc caccagttcg cccggcagct 1201 ccccgcaggc caacggcagc cggaagcgga tcgagcgctc cctgatgccg ggagccgctt 1261 tggagtggcg gcgggagcgg gaacgcggcc gccagaacgc caacttcctg gtgcccccgc 1321 tccggcagta cgagcagctg gacctggacg accggagcct ggtgcagcag ctgcggcgcc 1381 acgtcatcga ccaccacctg ctgcgcgtct acggcttccc cgtggagtcc gtcgtccacg 1441 agggcgccat cgagatcttc aagtgcctgc cgcacatgag cttcgccgcc gccctggcgg 1501 aaacggtgat caactgccac gacgggctga gcagccagca ggcggaggag gtggccacct 1561 ccagtgactc gggcaacagc tcgccccgct ccctggactc ggagtcctcc ggcgagtgga 1621 gcggcagcga gtgcgagtcc tccaactcct cctcgtcctc gtcctccgcc gatggcgatg 1681 gcgaactggg tctcgagctc aagtactgcc agtacgtcca ggtggagcgg agcctggcca 1741 agccgtgcgc ccgctgcaag cggcacttcc tggtggacga gctgaccggc gagtacctga 1801 gccgcgagga gtgccactac cactcgggca agtaccagcg ctactacgac ggcgtctgcc 1861 acggccgctg gacgtgctgc aacgagggcg aggagagctc gccgggatgc tgccagggcg 1921 accggcacgt gtggaccggc tcggtggtgg gcgtcaatgg gccgtactat gattttgtgc 1981 gcacccagca cagggatcag tcggaagagc aatcccccgc cgtctacgcc ctcgactgcg 2041 agatgagcta cacgggccgc ggtctggacg tgaccaaggt ctcgctggtg gccctcaacg 2101 ggcagctggt gtacgagcac ttcgtgcggc ccgagtgcga catcgtggac tacaacaccc 2161 ggtactcggg catctcggag cgggacctgc gctccggcgc caagagcctg gccgaggtgc 2221 agcgggatct gctccagctg atcgccgccg acacgatcct cgtcggccac gggctggaca 2281 acgacctgcg ggccctgcgg ctggtgcaca acaccctgat cgacacctct atcagcttcc 2341 cgcactgcag cggcttcccc taccgccggg ccctgcgcca cctgaccaag gtccacctga 2401 agcgggagat ccagagcggc gacgggacca cgggacacag cagcttcgag gacgcgaggg 2461 cctgcatgga gctgatgctc tggcggatcg gccgggaaca ggatcccaca tggagctggg 2521 acgattgagg agggggatct atcgggggat ctatcgaggg gccagcaagt acttttagtc 2581 gttaggagat cgcctagttt gtaccgtatt caagaaacaa aacacaatcc caaaatctca 2641 gctggggcgc ccacctggca gtcggtttct atgccaccga tctatactat actgtgtaga 2701 tctataaaga cccattgcca ggtgtcggct cagcgtatat catatacacc tatatcgaga 2761 aaatcgagta aatcgagcaa atcgagtaaa tcgcaaattg gaaaaattac aaaaatggca 2821 aaaaaaaaat agagaggata ataatattta tatgcgatac ataaggtaca ttttgtaagc 2881 gtatatttat agagataaaa tagaacttta atctacatat gtatatacac atattgtttt 2941 ttttttcttg attaatttcg aaccacgaga aaatgtactg aagttttagc tgtgatgttt 3001 ttttcacttt ctcacatatt tacacgacaa aaggaaaatg aaaagtaaaa gcaaacaaaa 3061 aaagagaaga aaaatacaaa aatatataca tacgcataca ttattttttt aagagcacag 3121 aagaaaggca atccaaatac tttttaattt cgaccaaaac tttcaactaa atcactccat 3181 ttatcataat ctaccattag gtttcgtttc gttttatttt ttccccaaac caaaccattt 3241 cttttattat tttacgaata tacaaatcat ctcatacgca aacggaagaa gaaaaaagta 3301 aagtttaact ttaactactt tatacactat gcataaacgt aagttaggtt aatcctgtgt 3361 ttttttccaa aactttttga ttatttattt aacgaattcg cgcgacaagt tcattgaaaa 3421 cttcttcaag tgtttaattt ttcacattga actccattct taggctaagc tatatatttg 3481 ttttctctcg agaaactatc gactattaaa accactattc cttgactccg atttcataag 3541 acgagacgag gaatacttta ttcgaaaatc gatgttccta gcagcataag tttcagcaca 3601 agtacactgc aaaaagcggc tgtttttata ttgaacggaa agagaaagaa gagaagagta 3661 atgcaaatgc acaacgacaa aatttaaaga gaataaaaga aacaaagatt tgtttaaaac 3721 taaatatcac ctcaagcaaa