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LOCUS XM_070218243 1913 bp mRNA linear INV 09-DEC-2024 (LOC108056719), transcript variant X2, mRNA. ACCESSION XM_070218243 VERSION XM_070218243.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1913 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1913 /gene="LOC108056719" /note="chromobox protein homolog 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056719" CDS 204..1190 /gene="LOC108056719" /codon_start=1 /product="chromobox protein homolog 3 isoform X2" /protein_id="XP_070074344.1" /db_xref="GeneID:108056719" /translation="MVKLGKKKAVEELGRKKLRNGAAPDGEENDGDTGSSASRSTSVS SSKKPLNKRKARPIVRSESEDSDDLPLNNGNNNKVSTSSSGGGSSAPKKRKLGRPKSN AAAKNGKKALANEDSEEDAVLDEQEAEVEYEVEAIVGQKTVKGATYFQVRWKGYTKAE DTWMLEADLSCDYLLEQFRAKEAKPKGKTAKGAKKAGGGGRGRPPGGGGGTKKSAAAP TDPEKEWVVERIVDFVDDAEGGLYRIRWKGFGAKDDTWEPESNLSCEGLIEKFKRDLV TQKNVETKELRESPKKTKRLVNEYYPRTNIHNRIERSSKRAAAKNRVFYGED" misc_feature 612..743 /gene="LOC108056719" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cd00024" /db_xref="CDD:349274" misc_feature 876..1022 /gene="LOC108056719" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cd00024" /db_xref="CDD:349274" misc_feature order(876..890,933..935,939..950,960..962,966..977, 981..986,1002..1004,1011..1016) /gene="LOC108056719" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:349274" polyA_site 1913 /gene="LOC108056719" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttccaattt taggaccatt tgcgctcgcg tcggggaaat tgggaaagtc agaactttct 61 aacatcgtgt acagtccgca gtcgtcgaaa aagaaaaaac tcggtatatt gttttcccag 121 atacgcggca aacggaaaaa gggagcgtaa acaattggca catcccggcc agaatccacc 181 aaccaaccgg atacgatagc aacatggtga agctgggcaa gaaaaaggcg gtcgaggagc 241 tgggccgcaa gaagctgagg aacggtgccg ccccagatgg cgaggagaac gatggggaca 301 ccggctcctc ggcctcccgc tccacatcgg tctcgtcgtc taagaagccg ctgaacaagc 361 gcaaggcccg cccgatagtg cgctccgaat cggaggacag cgacgacctg ccgctcaaca 421 atggcaacaa caacaaggtg tccaccagct cctccggcgg tggttcatcg gcccccaaga 481 agcgcaagct gggcaggccc aagtcgaatg cagccgccaa aaatggcaag aaggctctgg 541 ctaacgagga ttccgaggag gatgccgtcc tggacgagca ggaagccgag gtggaatacg 601 aggtggaggc cattgtgggc cagaagacgg tgaagggagc cacctacttc caggtgcgct 661 ggaagggata caccaaggcg gaggacacat ggatgctgga ggcggatctc agctgcgatt 721 acttgctgga acagtttcgg gccaaggagg ccaaacccaa aggcaagacc gccaagggcg 781 ccaagaaggc gggaggcggc ggtcgtggtc gtccgcccgg cggcggcggc ggcacaaaga 841 agagcgccgc tgctccaact gatcccgaaa aggagtgggt tgtcgagcgc atcgtggact 901 ttgtcgacga cgccgagggc ggcctgtacc gcattcggtg gaagggattc ggcgccaagg 961 acgacacctg ggagcccgag tcgaacctct catgcgaggg cctcatcgag aagttcaagc 1021 gcgacctggt cacgcagaag aacgtggaga ccaaggagct gcgcgaatcg cccaaaaaga 1081 ccaaacgact cgtcaacgaa tattacccga ggacaaatat tcacaatcgc atcgagcgct 1141 cctccaaacg ggctgccgcc aagaaccgcg tcttctacgg cgaggactga ggaaaggcag 1201 cggccccgcc ccctcgaagt ggtcgtcggc ggaggcggca ctaaaaaata ggattttagt 1261 acacttttta cttttttttt cgacattggt ttaaggcagg gatggcaaag aagagttgat 1321 ctctcgccaa ataactcttg ctgtcaattt ttcgtttgat gaaattgcag aactaagagt 1381 tttctggcaa actcaactct tatttgcaat tcctggttac gaggaaacac acgcgggcgg 1441 tgtacgtgga gtgttgtgga gctggagagg tcaggagtcg agatggagca cgatatgacc 1501 cccgaaaaaa tgcagacaag caacacatta caaaatactg aaatacagat ttatctagca 1561 cttaagtgag aggtcgggcg cttgaatgca gcacagtatg catatatgta gtattatatc 1621 tggttgtgct gcactcaacc agcgtagaat ttaagcaacc ataaaagtag acctaaaaaa 1681 tacacacaca catcttttag ccctaagccg aaagcccaag ttttgtcttc gcaagtaatt 1741 gccacagctg caaatagcct cttaactaac ttcttcccaa gcgtctccat tcataattgt 1801 gtacgccata gtgtacgcaa agtaattaca taataattag caaggggcca aaaaagcctc 1861 cagtaatatg aagtataatt aataaatgta aacgatgtca aaaatgcaca caa