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LOCUS XM_070218242 1914 bp mRNA linear INV 09-DEC-2024 (LOC108056719), transcript variant X1, mRNA. ACCESSION XM_070218242 VERSION XM_070218242.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1914 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1914 /gene="LOC108056719" /note="chromobox protein homolog 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056719" CDS 202..1191 /gene="LOC108056719" /codon_start=1 /product="chromobox protein homolog 3 isoform X1" /protein_id="XP_070074343.1" /db_xref="GeneID:108056719" /translation="MVKLGKKKAVEELGRKKLRNGAAPDGEENDGDTGSSASRSTSVS SSKKPLNKRKARPIVRSESEDSDDLPLNNGNNNKVSTSSSGGGSSAPKKRKLGRPKSN AAAKNGKKALANEDSEEDAVLDEQEAEVEYEVEAIVGQKTVKGATYFQVRWKGYTKAE DTWMLEADLSCDYLLEQFRAKQEAKPKGKTAKGAKKAGGGGRGRPPGGGGGTKKSAAA PTDPEKEWVVERIVDFVDDAEGGLYRIRWKGFGAKDDTWEPESNLSCEGLIEKFKRDL VTQKNVETKELRESPKKTKRLVNEYYPRTNIHNRIERSSKRAAAKNRVFYGED" misc_feature 610..741 /gene="LOC108056719" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cd00024" /db_xref="CDD:349274" misc_feature 877..1023 /gene="LOC108056719" /note="CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains; Region: CD_CSD; cd00024" /db_xref="CDD:349274" misc_feature order(877..891,934..936,940..951,961..963,967..978, 982..987,1003..1005,1012..1017) /gene="LOC108056719" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:349274" polyA_site 1914 /gene="LOC108056719" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccaatttta ggaccatttg cgctcgcgtc ggggaaattg ggaaagtcag aactttctaa 61 catcgtgtac agtccgcagt cgtcgaaaaa gaaaaaactc ggtatattgt tttcccagat 121 acgcggcaaa cggaaaaagg gagcgtaaac aattggcaca tcccggccag aatccaccaa 181 ccaaccggat acgatagcaa catggtgaag ctgggcaaga aaaaggcggt cgaggagctg 241 ggccgcaaga agctgaggaa cggtgccgcc ccagatggcg aggagaacga tggggacacc 301 ggctcctcgg cctcccgctc cacatcggtc tcgtcgtcta agaagccgct gaacaagcgc 361 aaggcccgcc cgatagtgcg ctccgaatcg gaggacagcg acgacctgcc gctcaacaat 421 ggcaacaaca acaaggtgtc caccagctcc tccggcggtg gttcatcggc ccccaagaag 481 cgcaagctgg gcaggcccaa gtcgaatgca gccgccaaaa atggcaagaa ggctctggct 541 aacgaggatt ccgaggagga tgccgtcctg gacgagcagg aagccgaggt ggaatacgag 601 gtggaggcca ttgtgggcca gaagacggtg aagggagcca cctacttcca ggtgcgctgg 661 aagggataca ccaaggcgga ggacacatgg atgctggagg cggatctcag ctgcgattac 721 ttgctggaac agtttcgggc caagcaggag gccaaaccca aaggcaagac cgccaagggc 781 gccaagaagg cgggaggcgg cggtcgtggt cgtccgcccg gcggcggcgg cggcacaaag 841 aagagcgccg ctgctccaac tgatcccgaa aaggagtggg ttgtcgagcg catcgtggac 901 tttgtcgacg acgccgaggg cggcctgtac cgcattcggt ggaagggatt cggcgccaag 961 gacgacacct gggagcccga gtcgaacctc tcatgcgagg gcctcatcga gaagttcaag 1021 cgcgacctgg tcacgcagaa gaacgtggag accaaggagc tgcgcgaatc gcccaaaaag 1081 accaaacgac tcgtcaacga atattacccg aggacaaata ttcacaatcg catcgagcgc 1141 tcctccaaac gggctgccgc caagaaccgc gtcttctacg gcgaggactg aggaaaggca 1201 gcggccccgc cccctcgaag tggtcgtcgg cggaggcggc actaaaaaat aggattttag 1261 tacacttttt actttttttt tcgacattgg tttaaggcag ggatggcaaa gaagagttga 1321 tctctcgcca aataactctt gctgtcaatt tttcgtttga tgaaattgca gaactaagag 1381 ttttctggca aactcaactc ttatttgcaa ttcctggtta cgaggaaaca cacgcgggcg 1441 gtgtacgtgg agtgttgtgg agctggagag gtcaggagtc gagatggagc acgatatgac 1501 ccccgaaaaa atgcagacaa gcaacacatt acaaaatact gaaatacaga tttatctagc 1561 acttaagtga gaggtcgggc gcttgaatgc agcacagtat gcatatatgt agtattatat 1621 ctggttgtgc tgcactcaac cagcgtagaa tttaagcaac cataaaagta gacctaaaaa 1681 atacacacac acatctttta gccctaagcc gaaagcccaa gttttgtctt cgcaagtaat 1741 tgccacagct gcaaatagcc tcttaactaa cttcttccca agcgtctcca ttcataattg 1801 tgtacgccat agtgtacgca aagtaattac ataataatta gcaaggggcc aaaaaagcct 1861 ccagtaatat gaagtataat taataaatgt aaacgatgtc aaaaatgcac acaa