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LOCUS XM_070218235 4768 bp mRNA linear INV 09-DEC-2024 containing sws (sws), transcript variant X3, mRNA. ACCESSION XM_070218235 VERSION XM_070218235.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4768 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4768 /gene="sws" /note="patatin like phospholipase domain containing sws; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108057728" CDS 16..4173 /gene="sws" /codon_start=1 /product="neuropathy target esterase sws isoform X3" /protein_id="XP_070074336.1" /db_xref="GeneID:108057728" /translation="MRVFKMYMYCALCVLGILFIAWFMYFKRLARLRLRDEIARSLSA VTSSSGGDLRGLRFRKRDKMLFYGRRMLRKMKNVSGQMYSSGKGYKRRAVMRFARRIL QLRRDNMPLEMRTVEPPAEYLEETIEGSDRVPPDALYMLQSIRIFGHFEKPVFLRLCK HTQLLELMAGDYLFKITDPDDSVYIVQSGMINVYISNADGSTLSLKTVRKGESVTSLL SFIDVLSGNPSYYKTVTAKAIEKSVVIRLPMQAFDEVFQDNPDVMIRVIQVIMIRLQR VLFTALRNYLGLNAELVQNHMRYKSVSTMSGPQASQSSSSRQAVATQLNLGSGVAVTV TRPPASPSRHSREEHTLSDPNPNPDGSVPGTSNLFTEVHGDAPNADLFHQQQHSVGNL STRRGSIGQMTPEGSQGRESAAGAPPSIDMRLVQSSAVDSLRKELGLPEEDAHIIEPF VEVRELEPNVTLITEGNADDVCVWFVMTGTLAVYQSNQDATRAKQADNKSDLLIHFVH PGEIVGGLAMLTGEASAYTIRSRNNSRIAFIRRAAIYQIMRQRPRIVLDLGNGVVRRL SPLVRQCDYALDWIFLESGRAVYRQDESSDSTYIVLSGRMRSVITHPGGKKEIVGEYG KGDLVGIVEMITETSRTTTVMAVRDSELAKLPEGLFNAIKLRYPIVVTKLISFLSHRF LGSMQTRSGSGAPGAPVEANPVTHKYSTVALVPITDEVPLTPFTYELYHSLCAIGPVL RLTSDVVRKQLGPNIFEAANEYRLTSWLAQQEDRNIITLYQCDSSLSAWTHRCMRQAD VILIVGLGDRSHLVGKFEREIDRLAMRTQKELVLLYPETTNARPANTLSWLNARPWVT KHHHVLCVKRIFTRKSQYRINDLYSRVLLSEPNMHSDFSRLARWLTGNSIGLVLGGGG ARGAAHIGMLKAIQEAGIPVDMVGGVSIGALMGALWCSERNITTVTQKAREWSKKMTK WFLQLLDLTYPITSMFSGREFNKTIHDTFGDVSIEDLWIPYFTLTTDITASCHRIHTN GSLWRYVRSSMSLSGYMPPLCDPKDGHLLLDGGYVNNLPADVMHNLGAAHIIAIDVGS QDDTDLTNYGDDLSGWWLLYKKWNPFTSPVKVPDLPDIQSRLAYVSCVRQLEEVKNSD YCEYIRPPIDKYKTLAFGSFDEIRDVGYVFGKNYFENMAKAGRLGRFNQWFNKEPPKR GNHASLNEYTFIDLAQIVCRLPETYAVNTAELFSEDEDCDGYISEPTTLNTDRRRIQV PRAGNSLSFSETELDSDVELDLQLERKTDKSTQSTPPATSRTSLRGKEEARHKEDHHR DRDWHWGAKHKDATDGGPSAAAGQTLTEQEQQQQELQDQGARTEQLVDKDEDKENRSS ANNETKN" misc_feature 451..816 /gene="sws" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:237999" misc_feature order(670..675,700..708) /gene="sws" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:237999" misc_feature order(775..783,793..801) /gene="sws" /note="flexible hinge region; other site" /db_xref="CDD:237999" misc_feature 1327..>1713 /gene="sws" /note="cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664" /db_xref="CDD:440428" misc_feature 1741..2040 /gene="sws" /note="effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038" /db_xref="CDD:237999" misc_feature order(1903..1908,1933..1941) /gene="sws" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:237999" misc_feature order(1999..2007,2017..2025) /gene="sws" /note="flexible hinge region; other site" /db_xref="CDD:237999" misc_feature 2686..3603 /gene="sws" /note="Patatin-like phospholipase domain containing protein 6 and protein 7; Region: Pat_PNPLA6_PNPLA7; cd07225" /db_xref="CDD:132864" misc_feature order(2752..2757,2761..2763,2836..2838,3196..3198) /gene="sws" /note="active site" /db_xref="CDD:132864" misc_feature 2830..2844 /gene="sws" /note="nucleophile elbow; other site" /db_xref="CDD:132864" polyA_site 4768 /gene="sws" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtaatagtt aacatatgag agtttttaaa atgtacatgt actgcgctct gtgcgtcctg 61 ggcatcctgt tcatcgcctg gttcatgtac ttcaagcgac tggcgcgtct gcggctgcgc 121 gacgagattg cccgctcgct gagcgccgtc acctcctcat ccggcggcga tttgcgcggc 181 ctgcgcttcc ggaagcggga caagatgctc ttctacggcc gccggatgct gcgcaagatg 241 aagaacgtca gcggtcagat gtacagcagc gggaagggct acaagcggcg ggcggtgatg 301 cgattcgccc gccgaatcct tcagctgagg cgggacaata tgccgctcga gatgcgcacg 361 gtggagccgc cggcggagta tctggaggag accatcgagg gcagcgatag agtgccgccc 421 gatgcgctct acatgctgca gagcatccgc atctttggcc acttcgagaa gcccgtcttc 481 ctgcgcctct gcaagcacac ccaactcctc gagctgatgg ccggcgacta tctgttcaag 541 atcaccgatc cggacgacag tgtctatatc gtgcagtcgg gcatgatcaa tgtgtatatc 601 tcgaatgcgg acggcagcac gctgtccctg aagacggtgc gcaagggcga gtcggtgacc 661 tcgctgctca gcttcatcga cgtgctgtcg gggaatccca gctactacaa gacggtcacg 721 gccaaggcga ttgagaagtc ggtggtgatt cggctgccca tgcaggcctt tgatgaggtg 781 ttccaggaca acccggacgt catgatccgc gtcatccagg tcatcatgat ccggctgcag 841 cgcgttctct tcaccgccct gcgcaactac ctcggcttga atgccgagct ggtgcagaat 901 cacatgcgct acaagagcgt ctccacgatg agcggaccgc aggcctcgca atcctcctcc 961 tcccgccagg cggtggccac ccaattgaat ttgggatcgg gtgtagcggt gaccgtgacg 1021 cgaccacctg cctcaccatc gcggcattcg cgcgaggagc acacgctgtc cgatccgaat 1081 cccaatccgg acgggagtgt cccgggcacg agcaacctat tcaccgaggt gcacggagat 1141 gcaccaaatg cggatctctt ccaccagcag cagcactcgg tggggaatct gtccacgcgt 1201 cgcggttcca tcggccaaat gacgcccgag ggatcgcagg gaagggagtc ggcagcggga 1261 gctcctccct cgattgacat gcgactggtg cagtcctcgg cggtggacag cctgcgcaag 1321 gagctgggcc tgcccgagga ggatgcccac atcattgagc cctttgtgga ggtgcgcgaa 1381 ctcgaaccga acgtaaccct catcaccgag ggcaatgcgg acgatgtgtg cgtgtggttc 1441 gtgatgaccg gcactctggc cgtctaccag agcaaccagg atgccacgcg ggccaagcag 1501 gcggacaaca agagcgacct gctcatccac tttgtgcatc ccggcgagat cgttggcggc 1561 ctggccatgc tgacgggcga ggcgagtgcg tatacgatta ggtcgcggaa caacagcagg 1621 atagccttca tccgaagggc ggccatctat caaatcatgc gacagcgacc gcgcatcgtt 1681 ttggatctgg gcaatggagt agtgcgccgt ttatcgccgc tggtgaggca gtgcgactac 1741 gccttggact ggatattcct ggagtctgga agagctgtct atcggcagga cgagagcagc 1801 gacagcacgt acattgtgct gagcggacga atgcgttcgg tgatcacgca tcccggcggc 1861 aagaaggaga tcgtcggcga gtacggcaag ggagatctcg tgggcatcgt cgagatgatc 1921 acagagacgt cgcgcaccac gacggtgatg gctgtgcgcg actcggagct ggccaagctg 1981 cccgagggcc tgttcaatgc catcaagctg cgctacccca tcgtggtgac caagctgatt 2041 agcttcctca gccaccgctt cctcggctcg atgcagacgc gctcgggcag cggggcgccg 2101 ggcgcgcccg tcgaggccaa tcccgtcacg cacaagtact ccacggtggc cctggttccc 2161 atcaccgacg aggtgccgct gacgcccttc acctacgagc tctaccactc gctctgtgcc 2221 ataggacccg tcctccgtct cacctccgat gtggtgcgca agcagctcgg cccgaacatt 2281 ttcgaggcgg ccaacgagta ccggctgacc tcgtggctgg cccagcagga ggatcgcaac 2341 atcatcaccc tgtatcagtg cgacagttcg ctgagcgcct ggacccatcg atgcatgcgc 2401 caggcggacg tcatcctgat cgtgggcctc ggcgatcgat cccatttggt tggaaagttc 2461 gagcgcgaga tcgatcggct ggcgatgcga acgcagaagg agctggtcct gctctacccg 2521 gagacgacca atgcccggcc ggcgaatact ctcagctggc tgaatgcccg gccctgggtg 2581 accaagcacc accacgtcct ctgcgtcaag cgcatcttta cgcgcaaaag tcaataccgc 2641 attaatgatc tctacagtcg cgtcttgctc tccgagccga acatgcattc cgacttctcg 2701 cgtttggccc gctggctgac gggcaactcg attggccttg tgctgggcgg cggtggggcg 2761 cgcggtgccg cccacattgg catgctgaag gccatccagg aggcggggat acccgtcgac 2821 atggtgggcg gcgtcagcat cggtgctttg atgggagcac tgtggtgctc ggagcgtaac 2881 atcaccacgg ttacgcaaaa ggcgcgcgag tggtcaaaga aaatgacgaa atggttccta 2941 caactactgg acctcaccta cccgatcaca tcgatgttct ccggacggga gttcaacaag 3001 acgatccacg acacctttgg ggatgtgagc atcgaggacc tgtggatacc ctacttcacc 3061 ctcaccaccg acataaccgc cagttgccat cgcattcaca ccaatggatc tctgtggcgt 3121 tacgtacgct cctccatgtc gctcagtggt tatatgccgc cgttgtgcga tcctaaagat 3181 gggcacctct tgctggatgg cggctatgtg aataatctgc cagccgatgt gatgcacaat 3241 ctgggggctg ctcacataat cgccatcgat gtgggatctc aggacgacac cgacctcact 3301 aactacggcg acgacctgag cggctggtgg ctgctctaca agaagtggaa tcccttcacg 3361 tcgcccgtga aggtgcccga cctgccggac atccaatctc gtctcgccta cgtgtcctgt 3421 gtgcgccaac tggaggaggt caagaactcc gactattgcg agtacatccg accgccgatt 3481 gacaagtaca agaccctggc cttcggcagc ttcgacgaga tccgcgatgt gggctatgtg 3541 ttcgggaaga actacttcga gaacatggcc aaggcgggtc ggctgggccg cttcaaccag 3601 tggttcaaca aggagccacc caagcggggc aaccacgcct cgctcaacga gtacacgttc 3661 atcgatctgg cgcagatcgt gtgccggctg ccggagacgt acgcggtgaa tacggcggag 3721 ctcttcagcg aggacgaaga ctgtgatggc tacatttcgg agccaacgac gctcaatacg 3781 gatcgacgac gcattcaagt gccgcgcgcc ggcaactcgc tgtccttctc ggagaccgaa 3841 ctggattcgg acgtggagct cgatctgcag ctggagcgca agacggacaa atccacgcag 3901 tcgacgccgc cggcgaccag caggacgagt ttgcgcggca aggaagaggc taggcataag 3961 gaggatcatc atcgtgatcg cgactggcac tggggagcga agcacaagga tgcgactgac 4021 ggcggaccct cggcagccgc cggacagacg ctaactgagc aagagcagca gcagcaggag 4081 ctgcaggatc agggcgcgag aacggagcag ctggtcgaca aggacgagga caaggagaac 4141 aggagcagcg cgaataacga aaccaaaaac tagctatata gacaagccac atcgaggcgg 4201 gatatctact caacagaatg cagcaacaag ccgaggacga ccaggtgcct tccgcttgcc 4261 cgacgcccaa cagcccaacg gtccaacggc caccacatta ccaagaaacc aagaaaccaa 4321 ccacaaacta ctcaaactca atcatccaat ctccaacgaa acaaactaaa tagcaatgac 4381 aaggaaattt gttaacctct aggttttata gcaaccaaga cttaggctta gcttagcata 4441 tggaatgatc ccatcccaat caatcctcat tcacctcaca cacaccccac acacaccaca 4501 cacattgtaa tggaggcaca acaagtccac aaactttgta tatacatata gttatatatt 4561 tttactgaag caaccgatat tgtagccacg tagccacgaa actgagactc ctttgcaatg 4621 aagcccccaa caaagtcccg ccccctattt gccgcacact tgtgtagtct ctctattaat 4681 ttaggtaagc aaatcgtttg tttaatggtc ggattttttt tgtaaatgca agcaaataaa 4741 tttaaacaat tgaaagtaca aaagcaaa