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LOCUS XM_070218234 4063 bp mRNA linear INV 09-DEC-2024 (LOC108070139), transcript variant X2, mRNA. ACCESSION XM_070218234 VERSION XM_070218234.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4063 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4063 /gene="LOC108070139" /note="uncharacterized LOC108070139; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070139" CDS 146..3424 /gene="LOC108070139" /codon_start=1 /product="serine/arginine repetitive matrix protein 2 isoform X2" /protein_id="XP_070074335.1" /db_xref="GeneID:108070139" /translation="MSSPDDIPGTSKPRATKRSPRTSSSDSKSMPSPPQTTSNGAHGS PSGRSPSAGRSPAGNRSPAGGRSPVGGQSPGVGPTNMRDRLLVSNAIAMDVSASESTS SSSSPQMNGHNHDDSNESDQLNGGSTNGTSRKSKKKKKKSHSRRERRLSGDSALMGWT GGFPKLTAMASIDSSSDLEPQEKEMEKEQPAKAEEKQDDQDKQQQQPAENPEQEEQIE SLVVTEDENSSSVPPVLKSSSPPSTPRSRKRAFSPAKKENTKKTTPDEAMDVSLDESA EKTEDIPLPVSSRFAKRFKSFCSQTLQSVELMRRTSRFSSQEPPAKLEEELAPVVGSK ESPDPKPEAAAAEAPPTPSALKLKATDEFYRLPFAYGWKRELVLPSTGNPKRRTGDVF FIAPNGRKLRSREDIVPMLKGELTIEHFCFQRQAQEAGPEFELVRRATPSSVQRRKSQ QAVAQPAPLPVTGKRVSKPKVPKGASPPSEGWTATMAVKGNSRVLASSNGSSSSTGAT IVTTSTRKRSFMSRQSSRLTSEKIVACIHCQAPLQGSPKTNICQNCSKIKRKKERESE MTAEPQPENEDQDEEQNDDGDETESVGSLLEIGEEIEVPGQQPPAELFNNLGHRRSPK DQEVVVIGGRKAIAIKADPPRRQVKVVPRQPDLTGYEKIYSKRSQVKNSDNELVESLG NAHNGCQVLMAIMKTMNLKDRANMSRVCKTWAMVSREMSVWRSVSLRDTYVGNWLFCM RELARHRTRELDMMGVIMAKPQLRFAGDLRVLKALRVLRTDAVDGEFLQLVFRHLPQL LELRATCTSATLNLCHLEQSAELRVLRIHMTEPKSTLVSLDSLAKLTHLTELSLRGVS DLGKLNLLFLKDLAGLEVLSLGSCQDLNSSQFGTQVLPALKLLRSFRLENDHKGMAMF PVDEIMLGLSKAGGVKRLELVNVDVDGGFSALLADCPSVTDLLLTPKCMHNTANMTNA VMQAISDNAEQLLVFRLGLVTQLLSATGALYKGKGKDVIPVQRPVPGIPENDHLNHCS GDDNCQETEHSQCVAFLPVERLKAILHHMMPQAWLTVAKVAMCETTSIKFLPRPEESS EENF" misc_feature 1238..1420 /gene="LOC108070139" /note="MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to...; Region: MBD; cl00110" /db_xref="CDD:469618" misc_feature order(1268..1270,1274..1276,1286..1288,1307..1309, 1313..1315,1340..1342,1349..1351,1361..1363) /gene="LOC108070139" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238069" misc_feature 2213..2317 /gene="LOC108070139" /note="F-box domain; Region: F-box; pfam00646" /db_xref="CDD:425796" misc_feature <2519..>2863 /gene="LOC108070139" /note="Leucine-rich repeat (LRR) protein [Transcription]; Region: LRR; COG4886" /db_xref="CDD:443914" polyA_site 4063 /gene="LOC108070139" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caacgctgcc gacaaccagg tggcaactct ttccggccga tttaccgaat gtcatttgag 61 agagtacttc tcactttttc gagggaaatt ggattgataa gtgaattttt ctggtgaaaa 121 gtaatttcgt gctaaaaaga gcaacatgag ctcgcccgac gacattcccg gaacatcaaa 181 gccgcgcgcc acgaagcgct ctccacggac ctccagcagc gactccaagt caatgccctc 241 gccgccccag acgaccagca atggggcaca tggctcgcca tccggcagat ctcccagcgc 301 cggacgcagt cccgccggca accgaagccc tgccggcggt cgtagtcccg tgggtggcca 361 gagtcccggc gtgggtccaa ccaacatgcg cgatcgcctg ctggtgtcca atgccattgc 421 catggatgtg tcggccagcg agtcgacctc tagctcttca tcgccgcaga tgaatggcca 481 taatcacgat gactccaacg agtccgatca gcttaacgga ggttccacaa atggaacctc 541 tcgcaagtcc aagaagaaaa agaagaagag ccacagtcgt cgtgagcgcc gcctatccgg 601 agattcggct ctcatgggct ggacaggggg attccccaag ctgacggcca tggccagcat 661 tgatagtagc tcggatttgg agccgcagga gaaggaaatg gagaaggagc agccagcgaa 721 ggcagaggaa aagcaggatg atcaggataa gcagcagcag cagccggcag agaatccgga 781 gcaggaggag caaattgaat cgttggtggt gaccgaggat gagaacagct caagtgttcc 841 cccggtatta aagtcatcgt cgccgccgtc gactcctcgt tcccgcaaac gcgcattcag 901 tcccgccaag aaggagaata ccaagaagac aactcccgac gaagctatgg atgtttcgct 961 agacgagagt gccgaaaaaa ctgaggacat acccctgccc gtgtccagtc gctttgccaa 1021 gcgtttcaag tccttctgta gccagacctt gcagtcggtt gagctgatgc gtcgcacttc 1081 gcgcttcagc agccaggagc ctccagccaa gctggaggag gaactggccc ccgtcgtggg 1141 cagtaaggag tcgcctgatc ctaaaccgga ggccgccgct gcggaagcac ctcccacacc 1201 ctcggccctg aaactaaagg ccaccgacga gttctatcgc ctgcccttcg cctacggctg 1261 gaagcgtgag ctcgtcctgc ccagcactgg taatcccaag cgtcgcaccg gcgatgtttt 1321 cttcattgcg cccaacggac gcaagttgcg ttcgcgcgag gatattgtgc ccatgctgaa 1381 gggcgagctg accatcgagc acttttgctt ccagcggcag gcgcaggagg cggggccgga 1441 gttcgagttg gtgcgtcggg ccacgccctc cagcgtgcag cgtaggaagt cccagcaggc 1501 ggtggctcag ccggctccct tgccggtcac cgggaagcgt gtgtccaagc ccaaggtgcc 1561 caagggcgcc agtccaccga gcgagggatg gacggccacc atggcggtga aggggaattc 1621 ccgagtgctg gcctccagca acgggagcag cagctcgacc ggagccacaa ttgtgaccac 1681 gtccactcgc aagcgaagct tcatgtccag acagtcgtcg cggctgacca gcgagaagat 1741 tgtggcctgt attcattgcc aggctccttt gcagggctct cccaagacca acatttgtca 1801 gaactgctcg aagatcaagc gcaagaaaga gagggaatcc gagatgacgg cagagcctca 1861 gccggaaaat gaggatcagg atgaggagca gaatgacgat ggcgatgaga ccgagagcgt 1921 tggcagcctg ttggagattg gcgaggagat tgaggtgccc ggccaacagc cgccggccga 1981 gctgttcaac aatttgggac accggcgctc gcccaaggat caggaggtgg ttgtgattgg 2041 cggacgcaag gctatagcca ttaaggccga tccgccgcgt cgccaagtga aagtggttcc 2101 acgacagcct gatttaactg gctatgagaa aatctacagc aagcgcagcc aggtcaagaa 2161 ttcggataac gaactggtgg agagcctggg caatgcccac aacggatgcc aggtgctgat 2221 ggccatcatg aagacgatga acctgaagga ccgcgccaac atgtcgcggg tgtgcaaaac 2281 ctgggccatg gtcagccgcg agatgagcgt gtggcgctcg gtgagcctgc gcgacactta 2341 tgtaggcaac tggctattct gtatgcgcga actggcccgc caccgcactc gcgagctgga 2401 catgatgggc gtgatcatgg ccaagccgca gcttcgtttc gccggcgatt tgcgcgtcct 2461 caaggcgctg cgcgttctac gcaccgatgc ggtggatgga gagttcctgc agctggtctt 2521 tcgccatctg ccgcagctgc tggagctgag ggccacctgc acgagtgcta cactgaatct 2581 gtgccacctg gagcagtccg cagaactgcg cgtgcttcgc atccacatga ccgagccgaa 2641 atcgaccttg gtatcgctgg actcactggc caaacttacg catctgactg agttgagtct 2701 gcgtggagtg tccgatttgg gcaagctgaa cttgctgttc ttgaaggatc tcgccggcct 2761 ggaggtgcta tcgttgggct cgtgccagga cctaaactct tcgcagtttg gcacgcaagt 2821 gctgcccgct ctgaagctgc tgcgctcctt ccgcctggag aacgatcaca agggcatggc 2881 catgttcccg gtggacgaga ttatgcttgg tctatcgaag gccgggggag tcaaacgcct 2941 ggagctggtg aatgtggatg tggacggcgg attcagcgcc ttgctggccg actgccccag 3001 tgttacggat ctgctgctga cccccaagtg tatgcataac acggccaata tgaccaatgc 3061 cgttatgcag gcgatcagcg acaatgccga gcagttgctg gtgttccgtc tcggtttggt 3121 tacccagctg ctcagtgcca ccggggcgct gtacaaggga aagggcaagg acgtgatccc 3181 agtgcagcgt ccagtgccgg gaattccgga gaacgaccac ctaaatcact gctccggcga 3241 cgataattgc caggagacgg agcacagcca gtgcgtggcc tttctgcccg tggagcgctt 3301 gaaggcgatc ctgcaccaca tgatgccgca ggcctggctc acggtggcca aggtggcgat 3361 gtgcgagacg accagcatca agttcctgcc ccgtccggag gagagcagcg aggagaactt 3421 ctagcctagg tgccataaga tatagatata agtaaccccc ctcctcctcc cagtaccaga 3481 gatgccaaga ctgacacttt gagaaccatc acaaaaaaac cacaactaaa ttccagcgga 3541 aacgaagaac gaacaaggaa atgttattgc gtcatcttaa aaagagcatt cccaggaatc 3601 gcacattatt tttgtttttg aaatcatctt tcgtttaacg gcgtttaaaa cgtcccattg 3661 tctcaccttc gcattggaag tagaatcaac agcaacgctg tgtttttgtt cgaccttcgg 3721 gtacttacca tttattacat cttaaacatc ttgtaatcaa accaatttgt aataggagtt 3781 gaacctaata aaacggcaga tctcctagtg tgggaaaact tacttgacta aattgataga 3841 gaaccaaatg attgggaaat gttgaatttc aaattcagcg gtattcttta gttcataagt 3901 tagaaatagc tcaagtctat atgtacataa aggtcctgtt tgccttcaat acgaagctca 3961 gatcgaacta ttgattaagt tgtagtcgta aaatgtcgca cattatgtac atttcggcac 4021 tcatttaaaa ataaaatcca taagggaaac acccttcact ttc