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LOCUS XM_070218232 3582 bp mRNA linear INV 09-DEC-2024 transcript variant X9, mRNA. ACCESSION XM_070218232 VERSION XM_070218232.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3582 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3582 /gene="rdgB" /note="retinal degeneration B; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108054546" CDS 137..3205 /gene="rdgB" /codon_start=1 /product="protein retinal degeneration B isoform X6" /protein_id="XP_070074333.1" /db_xref="GeneID:108054546" /translation="MKDSTSEPYVSTAVTAASTTGSERKKSAPAVPPIVTQQPPSAEA SSDEEEGEEEDDDEDENDAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHS PVGSAHSFDLQSKKPHAKTAPRRHVANWRMERLEVDSKSNSDEEFFDCLDTNETNSLA KWSSLELLGEGDDSPPPHGGPSSAASVGGRGSSRQEDSIFNQDFLMRVASERGNKRQL RSSASVDRSHDSSPPGSPSTPSCPTTILILVVHAGSVLDAASELTAKKSDVTTFRGSF EAVMRQHYPSLLTHVTIKMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIADVPI GAIPLLSVASPEFHETVNKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYE ALCRSNGSQPGTASNSGGDAAASNVNTHNPLGARHSRLDDDERFIEADLDAKRLLVAP SPRRRRSSSSSDSRASKLDFEVCDFFMFGSPLSVVLAARKLHDAKAALARPNCHQVYN LFHPTDPIASRLEPLLSARFSILAPVNVPRYAKYPLGNGQPLHLLEVIQSHPQHFNDG NNLLAGRRLSDASMQSTISGLIENVSLSTIHALQNKWWGTKRLDYALYCPEGLSNFPA HALPHLFHASYWESPDVIAFILRQIGKFEGIPFVGSNDDKDNASFHPGQPREKWIKKR TSVKLKNVAANHRANDVIVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGE WTFLSTEVTDKNGRISYSIPDQLSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVV FSIDGSFTASMSVTGRDPKVRAGAVDVCRHWQELGYLLIYITGRPDMQQQRVVSWLSQ HNFPHGLISFADGLSTDPLGHKTAYLNNLVQNHGISITAAYGSSKDISVYTNVGMRTD QIFIVGKVGKKLQSNATVLSDGYAAHLAGLQAVGGSRPAKGNARMVIPRGCFNLPGQT ANPRRRSNAFELQLANISPCSSNINSPGSSNHILLAQLIENAIEKDTPAA" misc_feature 1538..2083 /gene="rdgB" /note="DDHD domain; Region: DDHD; pfam02862" /db_xref="CDD:460725" misc_feature 2525..2920 /gene="rdgB" /note="This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; Region: LNS2; smart00775" /db_xref="CDD:197870" polyA_site 3582 /gene="rdgB" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgggcggtgg cgaggagtgc agcgacggtc agtccgatgt ggccacctca agcatcttgg 61 catccacctc aatctcacca cacacccttg ccaaattgta aacgtattaa tttgcataaa 121 aatcgaagag attctgatga aagatagcac ttcggaaccc tatgtgagca cggcggtcac 181 cgccgcctcc acaacgggca gcgaacggaa gaaatccgct ccggccgtgc cgcccatcgt 241 aacccaacag ccgcccagcg cggaggccag ttcggatgag gaggagggcg aggaggagga 301 cgacgacgag gacgagaacg atgccattgg cacgggcgtc gatctgtccg ccaatcaagg 361 tggatccgcc caaaggtccc gatcccagag catccagatg gcgcagaagg gcaaattcgg 421 gtccaagggg gccctccatt cgcccgtggg atctgcccac agctttgatc tccagtccaa 481 aaagccgcat gcaaagacag cgccacgcag acatgtggca aactggcgca tggagcgatt 541 ggaagtggac tccaaatcca attcggatga agaattcttc gactgtttgg acaccaatga 601 gacgaactcg ctggccaagt ggagctccct ggagctgctg ggcgagggcg acgacagtcc 661 gccgccgcat ggcggaccct ccagcgctgc ctccgtgggc ggacgaggca gctcgcggca 721 ggaggacagc atcttcaacc aggacttcct gatgcgcgtg gcctcggagc gtgggaacaa 781 gcggcaattg cgctcctcgg ccagcgtgga tcgcagccac gactcgtcgc cgccgggctc 841 gccgagcaca ccgtcatgcc ccacaaccat cctgatcctg gtggtccatg cgggcagtgt 901 tttggatgcg gccagcgagc tgacggccaa gaaatcggat gtcaccacct ttcgcggctc 961 cttcgaggcg gtgatgcgtc agcactaccc gagcctgctc acccatgtga ccatcaagat 1021 ggtgccgtgt ccctcgatct gcaccgacgc cctgggcatc ctctccagcc tgagtccgta 1081 ctccttcgat gcctccccct cggcggcgga tataccgaat atagccgacg ttccgatcgg 1141 tgcgatacct ctcctctcag ttgcttcgcc ggaattccat gagacggtca acaagacggt 1201 ggccgctgcg aatatagtgt accacgaatt cttgaagtcg gaggagggcc acggattctc 1261 cggacagatt gtgatgctgg gcgattcgat gggctcgctg ctggcctacg aggcgctctg 1321 ccgatcgaat ggcagccagc cgggcacagc ctcgaattcc ggcggagatg cggcggccag 1381 caatgtgaat acccacaatc cgctgggcgc tcgccattcg cgtttggacg acgacgagcg 1441 gttcatcgag gccgatctgg atgccaagcg gctgctggtg gccccgtcgc cgcgtcgtcg 1501 ccgttccagc tcctcgagcg actcgcgggc cagcaaactg gactttgagg tctgcgactt 1561 cttcatgttc ggctcgccgc tgtcggtggt gctggcggcg cggaaactgc acgatgccaa 1621 ggccgctctg gcccggccga actgccatca ggtgtacaat ctgttccatc caaccgatcc 1681 gattgcctcg cgtctggagc cgctgctcag cgcgagattc tccattttgg cgccggttaa 1741 tgtgccccgg tatgccaagt atccgctggg aaatggtcag ccattgcatt tattggaggt 1801 gattcagtcg catccgcagc actttaacga tggcaacaac ctgttggccg gaagacgact 1861 ctcggatgcc tcgatgcaga gcacgatatc gggtctgatt gagaatgtct cgcttagtac 1921 gatccatgcc cttcaaaaca aatggtgggg caccaagcgc ttggactacg ccctctattg 1981 ccccgaggga ctgagcaact ttccggccca cgccttgccg catctcttcc acgccagcta 2041 ctgggagagc ccggatgtga ttgcgttcat cctgcggcag attggcaaat tcgagggcat 2101 accctttgtg ggctccaatg acgacaagga caacgcctcc tttcacccag gacagccgcg 2161 cgagaagtgg atcaagaagc gcacctcggt gaagctgaaa aatgttgcgg ccaatcatcg 2221 ggccaacgat gtgatcgtcc aggagggcag ggagcagcgg ctgaatgccc gcttcatgta 2281 cggacccctc gacatgatca cgctgcacgg cgagaaggtg gatgtgcaca tcatgaagga 2341 tccgccggcg ggcgaatgga cattcctcag caccgaggtg acggacaaga acggtcgcat 2401 ctcgtacagc attccggatc agttgtccct cggctatggc atctatccgg tcaagatggt 2461 cgtccgcggc gatcacacct cggtggattg ctacatggcg gtggtgccgc ctttgaccga 2521 gtgcgtggtc ttcagcatcg atggctcctt caccgcctcg atgtcggtga cgggcaggga 2581 tcccaaagtt cgggccggcg ccgtcgacgt ctgccggcac tggcaggagc tgggctacct 2641 gctgatctac atcaccggac gacccgacat gcagcagcag cgcgtcgtct cctggctgag 2701 ccagcacaac ttcccccacg gcctcatctc gttcgccgac ggcctgtcca ccgatccgct 2761 gggccacaag acggcctatc tcaacaacct ggtgcagaac cacggaatct caatcaccgc 2821 cgcctacggc agcagcaagg acatcagtgt ctacacgaat gtgggcatgc gaaccgatca 2881 gatcttcatc gtgggcaagg tcggcaagaa actgcagtcc aatgccactg tgctgagcga 2941 tggctacgcc gcccacttgg ccggtttgca ggcggtgggt ggttcgcgtc cagccaaggg 3001 caatgcccgc atggtcatcc cccgcggatg cttcaatctt cccggccaga cggcgaatcc 3061 gcgacgcaga agcaacgctt tcgagctgca attggccaac atcagtccct gcagcagcaa 3121 catcaacagt cccggcagca gcaaccacat cctactggcc cagctgattg agaatgccat 3181 tgaaaaggac accccagctg cctaggagaa ctagatgaag atgcttacat atttcttgtt 3241 ttgattttaa gttaatagtc tcatccatcc tctcaaaact agtccgccac gaatcgtatt 3301 gtattgtatt ttattctatt ttaaagtctt aagtttccta agtttcacgt agaacaaatg 3361 ccgtattatt tatgatataa gttattacta ttatgattat tattattatt gtaattatta 3421 ccgcctttat gtactatcct tatttgtatt tgtatgatat tattttgatt gcgaacaaaa 3481 gccaaaatgc aacaaaacat aagaaatacg tacgccagta tgtagtacca aataaacaaa 3541 agcagtacag taaatgggcc tgttgaaaat atatatatct ta