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LOCUS XM_070218231 6607 bp mRNA linear INV 09-DEC-2024 transcript variant X7, mRNA. ACCESSION XM_070218231 VERSION XM_070218231.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6607 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6607 /gene="rdgB" /note="retinal degeneration B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108054546" CDS 450..4223 /gene="rdgB" /codon_start=1 /product="protein retinal degeneration B isoform X5" /protein_id="XP_070074332.1" /db_xref="GeneID:108054546" /translation="MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIII NEPYKDGPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCP FVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYVKEEDPK HFVSDKTGRGPLGEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWGMQTKLE KFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQLALAKKMGGGEECSDD STSEPYVSTAVTAASTTGSERKKSAPAVPPIVTQQPPSAEASSDEEEGEEEDDDEDEN DAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDLQVANWRM ERLEVDSKSNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPPHGGPSSAASVGGR GSSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGSPSTPSCPTTILIL VVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTIKMVPCPSICTDAL GILSSLSPYSFDASPSAADIPNIADVPIGAIPLLSVASPEFHETVNKTVAAANIVYHE FLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSNGSQPGTASNSGGDAAASNVNTHNP LGARHSRLDDDERFIEADLDAKRLLVAPSPRRRRSSSSSDSRASKLDFEVCDFFMFGS PLSVVLAARKLHDAKAALARPNCHQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPR YAKYPLGNGQPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQSTISGLIENVSLSTI HALQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASYWESPDVIAFILRQIGKFEG IPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLKNVAANHRANDVIVQEGREQRLNAR FMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRISYSIPDQLSLGYGIY PVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTASMSVTGRDPKVRAGAVDVCRH WQELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTDPLGHKTAYLNNLV QNHGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNATVLSDGYAAHLAGL QAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRRYLERKTVSSCCLMVFQTT" misc_feature 450..1253 /gene="rdgB" /note="Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs); Region: SRPBCC_PITPNM1-2_like; cd08889" /db_xref="CDD:176898" misc_feature order(510..515,522..524,534..536,543..545,567..569, 624..626,630..632,636..638,642..644,651..653,657..659, 666..668,678..680,690..695,699..701,705..707,711..713, 717..719,732..734,738..740,744..746,753..758,774..776, 780..782,1053..1055,1071..1073,1077..1079,1107..1109, 1131..1139,1146..1148) /gene="rdgB" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176898" misc_feature 642..698 /gene="rdgB" /note="putative lipid exchange loop [active]" /db_xref="CDD:176898" misc_feature order(801..890,906..980,1035..1040) /gene="rdgB" /note="putatative regulatory loop [active]" /db_xref="CDD:176898" misc_feature 939..941 /gene="rdgB" /note="putative PKC phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:176898" misc_feature 2631..3176 /gene="rdgB" /note="DDHD domain; Region: DDHD; pfam02862" /db_xref="CDD:460725" misc_feature 3618..4013 /gene="rdgB" /note="This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; Region: LNS2; smart00775" /db_xref="CDD:197870" ORIGIN 1 ttaaatgtca catacacagg cagaagccat agcaactagc acacctacat ctctagacct 61 gtacaaaacc cgccccactg cccccggaaa aatatctaca gaccgctgac taacctcgcc 121 tcgttttccg ttttccattt tccgatttcc tcattccgtc caggtcatag acgacgcctc 181 gccccgcacc caagcacccc gaaagtgtcg gacgacagcg tcgcctccac gtcatccagc 241 catgaccagc ggcaatcgat gattgccatt ccctcagcca acgagagcca atagaggcag 301 ccggaaagga gcggatccgt cggaagagcc cgccactcgc cactcgccat tcgaacgaac 361 ccatcaacag ccgcaggagg ggccttcgct tccctgcttc aactgccctt tgaaagccaa 421 ggactaaagt cacacggtca cgggtcaaca tgctgatcaa ggagtaccgc attccactgc 481 ccctcaccgt ggaggagtac cgcatcgccc agctctacat gatagcgaaa aagagtcgcg 541 aggagagtca tggcgagggc agtggggttg agattatcat caatgagccc tataaggacg 601 gtcccggggg aaatggtcag tacacgaaga agatctacca tgtgggcaat catctgccag 661 gctggatcaa gagtcttttg cccaagagcg ctttaaccgt ggaggaggag gcctggaatg 721 cctatcccta taccaggact cgctacacct gcccatttgt ggagaagttc tcgctggaca 781 ttgagacata ctattacccg gataatggct accaggataa tgtctttcag ttgtccggaa 841 gcgatctgcg taaccgcatc gtggatgtaa ttgacattgt gaaggaccag ctgtggggcg 901 gcgattatgt caaggaggag gatcccaagc acttcgtgtc ggacaagacg ggccgcggac 961 ctctgggcga ggactggctg gaggagtact ggcgcgaggt gaagggcaag aagcagccga 1021 cgccccgcaa catgtccctg atgaccgcct acaagatctg ccgcgtggag ttccgctact 1081 ggggcatgca gacgaagctg gaaaagttca tccacgacgt ggcgctgcgc aagatgatgc 1141 tgcgcgccca tcggcaggcg tgggcgtggc aggacgagtg gttcggcctg accatcgagg 1201 atatccgcga gctggagcgc cagacccaac tggccctggc caagaaaatg ggcggtggcg 1261 aggagtgcag cgacgatagc acttcggaac cctatgtgag cacggcggtc accgccgcct 1321 ccacaacggg cagcgaacgg aagaaatccg ctccggccgt gccgcccatc gtaacccaac 1381 agccgcccag cgcggaggcc agttcggatg aggaggaggg cgaggaggag gacgacgacg 1441 aggacgagaa cgatgccatt ggcacgggcg tcgatctgtc cgccaatcaa ggtggatccg 1501 cccaaaggtc ccgatcccag agcatccaga tggcgcagaa gggcaaattc gggtccaagg 1561 gggccctcca ttcgcccgtg ggatctgccc acagctttga tctccaggtg gcaaactggc 1621 gcatggagcg attggaagtg gactccaaat ccaattcgga tgaagaattc ttcgactgtt 1681 tggacaccaa tgagacgaac tcgctggcca agtggagctc cctggagctg ctgggcgagg 1741 gcgacgacag tccgccgccg catggcggac cctccagcgc tgcctccgtg ggcggacgag 1801 gcagctcgcg gcaggaggac agcatcttca accaggactt cctgatgcgc gtggcctcgg 1861 agcgtgggaa caagcggcaa ttgcgctcct cggccagcgt ggatcgcagc cacgactcgt 1921 cgccgccggg ctcgccgagc acaccgtcat gccccacaac catcctgatc ctggtggtcc 1981 atgcgggcag tgttttggat gcggccagcg agctgacggc caagaaatcg gatgtcacca 2041 cctttcgcgg ctccttcgag gcggtgatgc gtcagcacta cccgagcctg ctcacccatg 2101 tgaccatcaa gatggtgccg tgtccctcga tctgcaccga cgccctgggc atcctctcca 2161 gcctgagtcc gtactccttc gatgcctccc cctcggcggc ggatataccg aatatagccg 2221 acgttccgat cggtgcgata cctctcctct cagttgcttc gccggaattc catgagacgg 2281 tcaacaagac ggtggccgct gcgaatatag tgtaccacga attcttgaag tcggaggagg 2341 gccacggatt ctccggacag attgtgatgc tgggcgattc gatgggctcg ctgctggcct 2401 acgaggcgct ctgccgatcg aatggcagcc agccgggcac agcctcgaat tccggcggag 2461 atgcggcggc cagcaatgtg aatacccaca atccgctggg cgctcgccat tcgcgtttgg 2521 acgacgacga gcggttcatc gaggccgatc tggatgccaa gcggctgctg gtggccccgt 2581 cgccgcgtcg tcgccgttcc agctcctcga gcgactcgcg ggccagcaaa ctggactttg 2641 aggtctgcga cttcttcatg ttcggctcgc cgctgtcggt ggtgctggcg gcgcggaaac 2701 tgcacgatgc caaggccgct ctggcccggc cgaactgcca tcaggtgtac aatctgttcc 2761 atccaaccga tccgattgcc tcgcgtctgg agccgctgct cagcgcgaga ttctccattt 2821 tggcgccggt taatgtgccc cggtatgcca agtatccgct gggaaatggt cagccattgc 2881 atttattgga ggtgattcag tcgcatccgc agcactttaa cgatggcaac aacctgttgg 2941 ccggaagacg actctcggat gcctcgatgc agagcacgat atcgggtctg attgagaatg 3001 tctcgcttag tacgatccat gcccttcaaa acaaatggtg gggcaccaag cgcttggact 3061 acgccctcta ttgccccgag ggactgagca actttccggc ccacgccttg ccgcatctct 3121 tccacgccag ctactgggag agcccggatg tgattgcgtt catcctgcgg cagattggca 3181 aattcgaggg catacccttt gtgggctcca atgacgacaa ggacaacgcc tcctttcacc 3241 caggacagcc gcgcgagaag tggatcaaga agcgcacctc ggtgaagctg aaaaatgttg 3301 cggccaatca tcgggccaac gatgtgatcg tccaggaggg cagggagcag cggctgaatg 3361 cccgcttcat gtacggaccc ctcgacatga tcacgctgca cggcgagaag gtggatgtgc 3421 acatcatgaa ggatccgccg gcgggcgaat ggacattcct cagcaccgag gtgacggaca 3481 agaacggtcg catctcgtac agcattccgg atcagttgtc cctcggctat ggcatctatc 3541 cggtcaagat ggtcgtccgc ggcgatcaca cctcggtgga ttgctacatg gcggtggtgc 3601 cgcctttgac cgagtgcgtg gtcttcagca tcgatggctc cttcaccgcc tcgatgtcgg 3661 tgacgggcag ggatcccaaa gttcgggccg gcgccgtcga cgtctgccgg cactggcagg 3721 agctgggcta cctgctgatc tacatcaccg gacgacccga catgcagcag cagcgcgtcg 3781 tctcctggct gagccagcac aacttccccc acggcctcat ctcgttcgcc gacggcctgt 3841 ccaccgatcc gctgggccac aagacggcct atctcaacaa cctggtgcag aaccacggaa 3901 tctcaatcac cgccgcctac ggcagcagca aggacatcag tgtctacacg aatgtgggca 3961 tgcgaaccga tcagatcttc atcgtgggca aggtcggcaa gaaactgcag tccaatgcca 4021 ctgtgctgag cgatggctac gccgcccact tggccggttt gcaggcggtg ggtggttcgc 4081 gtccagccaa gggcaatgcc cgcatggtca tcccccgcgg atgcttcaat cttcccggcc 4141 agacggcgaa tccgcgacgc agaaggtacc tggaaagaaa gactgtttcc tcctgttgtt 4201 tgatggtttt tcaaaccact taaagcataa aaaaacattg aaaactacac gaaacaaaag 4261 ccgattgtaa agctatatac taaatacaat tataaaaaag atatatacaa ggatatattc 4321 agaatataga accgtttaac atatgcaagc gaacaaagtt caagaaacca cgtgaggtac 4381 aacaactgaa ggacaaacta atggaaccga agatctcccg atcgataagg atacaactaa 4441 gacaaggacg agcggaaagc gttgcaaaat caaaaggcaa atttaatgca tttcttgaca 4501 aaacaaccac aacaaactct tacgaaaagt ataaattaac ggcttccgta aaccaaacaa 4561 aaacctaaaa ctaaaaatat atatctatat gtatgcgtgt aaaattgaca aaaaaacggt 4621 tcttaagaag aaactaaaat cttcatgaaa ttgaatacaa tctattacct ggccccagaa 4681 atttgaaatc tccataattg tgatagtctt tcgctaccaa aagttaattt aaaaagaaaa 4741 ggaaaaacag caaaatatat atttatctct actaaaattg ttattcgaaa agaaactatt 4801 ggatattgtg taaaaaatgt ataacaaaaa accaaaaaac ccgattttgt gataccaaaa 4861 ctaaaaccga aactgaaacc aaatttgagt tcgagatgag atcaagccga aagctcctcg 4921 tgttagaaac ctatacaaac aactcaaggc gacctgaaga tgtaacgggc atggaatctg 4981 acccatatat tactatatat atatatatgc ataacccagt tatgtgctgt ccacacaagt 5041 taactaaaaa ctctcacaca actcgaaagc aaaataaatc tcagctataa accagataac 5101 actgaattag aggtacaaaa gggaccttaa aacgagaaaa atatatatgt aatctgttcg 5161 atctgtttag gtttacctaa gccaaagttg gttaactatc gagtagtcga gatacgccag 5221 taagatactt cctaaactga aatataaacg caaattgaag agtttaaacc gatagttgta 5281 acgagaacag agtaattgta tgtaaagata aagatatata tatatatacc tacactatat 5341 actgtatatt tatctagcgc aactacatta aggacttttg aagcttgcta actgacaaaa 5401 agtgttccga tcaaagtatt gtccggctat acgttcctct ctcctccatt tgagtcgact 5461 ttcaactctc ttttattttc ctgtagcgag tattcaacta aaaaccgatg gaagatccac 5521 tagaatttaa gatcaatctc tgcctaagaa gagtttatcc tatataagta cgtagcaagt 5581 tggttcagcg tgaggtatta aggtattaaa taacactcca gatactcgta gagtccaaag 5641 gtttatgtct gtctaattag ttggtaaatt aatggcattt ctgtattatt attttatact 5701 gttcttggaa acttttgaat ctcttcccca ccaaaaaata tgaaaacttt tctttcttca 5761 gggtcagaag tttaagactt tacacaatgg gttatacttg attgttctat ggaatcctaa 5821 aatttcatat taatccattg atttgttcct gatttatcgt agcaatttgt acacttccac 5881 atcctacagt tccatttatc tccaaagtaa gaactaccaa agccaataaa aagttgagct 5941 aaattgtatt gatattttga gaacccacca tttagattaa gctaaagtcc ccactaatgc 6001 agagaatata atcaaagaac aaaacactct aagcaaaaac aatgaaaagg tttaaaatac 6061 tacaagcaaa taggtaaata tatgtccgtg tggctatgta ttctaattgt taagtgcaaa 6121 agtccaggaa taacgaatac gaattcagat ggtaaacaat tataaagaga gcgaggcgaa 6181 caaaatatgg aattatttat tgacaacaaa atctacaagt cgaagaacta aaaaacaaaa 6241 atgaggagca agccaaatgc aatctattta caaaatccta caaaaaccta aggcgaggca 6301 gaaatgacaa acagaagagt taaagatagc tgatccgaca aaaataaaga tatatatata 6361 tgtatatgaa caccagagat ttttaagcca attgttgaaa ttggactatg acaaataaca 6421 aaagtaaaca aattgaaata tggcagtaac agatattttt cgatgtaagc tgtttgttag 6481 aaaatgatcg agtttcagcg aaatgatatg tggccaaaac cagttaatca tttcacagaa 6541 aatcgaaaac aaagcggttc atgaaaagat aacaaaaaaa aaaaacctaa acaaaaacaa 6601 atgttct