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LOCUS XM_070218230 6646 bp mRNA linear INV 09-DEC-2024 transcript variant X5, mRNA. ACCESSION XM_070218230 VERSION XM_070218230.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6646 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6646 /gene="rdgB" /note="retinal degeneration B; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108054546" CDS 450..4262 /gene="rdgB" /codon_start=1 /product="protein retinal degeneration B isoform X4" /protein_id="XP_070074331.1" /db_xref="GeneID:108054546" /translation="MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIII NEPYKDGPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCP FVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYVKEEDPK HFVSDKTGRGPLGEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWGMQTKLE KFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQLALAKKMGGGEECSDD STSEPYVSTAVTAASTTGSERKKSAPAVPPIVTQQPPSAEASSDEEEGEEEDDDEDEN DAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDLQSKKPHA KTAPRRHVANWRMERLEVDSKSNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPP HGGPSSAASVGGRGSSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGS PSTPSCPTTILILVVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTI KMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIADVPIGAIPLLSVASPEFHETV NKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSNGSQPGTASNSG GDAAASNVNTHNPLGARHSRLDDDERFIEADLDAKRLLVAPSPRRRRSSSSSDSRASK LDFEVCDFFMFGSPLSVVLAARKLHDAKAALARPNCHQVYNLFHPTDPIASRLEPLLS ARFSILAPVNVPRYAKYPLGNGQPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQST ISGLIENVSLSTIHALQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASYWESPDV IAFILRQIGKFEGIPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLKNVAANHRANDV IVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRISY SIPDQLSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTASMSVTGRD PKVRAGAVDVCRHWQELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTD PLGHKTAYLNNLVQNHGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNAT VLSDGYAAHLAGLQAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRRYLERKTVSSC CLMVFQTT" misc_feature 450..1253 /gene="rdgB" /note="Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs); Region: SRPBCC_PITPNM1-2_like; cd08889" /db_xref="CDD:176898" misc_feature order(510..515,522..524,534..536,543..545,567..569, 624..626,630..632,636..638,642..644,651..653,657..659, 666..668,678..680,690..695,699..701,705..707,711..713, 717..719,732..734,738..740,744..746,753..758,774..776, 780..782,1053..1055,1071..1073,1077..1079,1107..1109, 1131..1139,1146..1148) /gene="rdgB" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176898" misc_feature 642..698 /gene="rdgB" /note="putative lipid exchange loop [active]" /db_xref="CDD:176898" misc_feature order(801..890,906..980,1035..1040) /gene="rdgB" /note="putatative regulatory loop [active]" /db_xref="CDD:176898" misc_feature 939..941 /gene="rdgB" /note="putative PKC phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:176898" misc_feature 2670..3215 /gene="rdgB" /note="DDHD domain; Region: DDHD; pfam02862" /db_xref="CDD:460725" misc_feature 3657..4052 /gene="rdgB" /note="This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; Region: LNS2; smart00775" /db_xref="CDD:197870" ORIGIN 1 ttaaatgtca catacacagg cagaagccat agcaactagc acacctacat ctctagacct 61 gtacaaaacc cgccccactg cccccggaaa aatatctaca gaccgctgac taacctcgcc 121 tcgttttccg ttttccattt tccgatttcc tcattccgtc caggtcatag acgacgcctc 181 gccccgcacc caagcacccc gaaagtgtcg gacgacagcg tcgcctccac gtcatccagc 241 catgaccagc ggcaatcgat gattgccatt ccctcagcca acgagagcca atagaggcag 301 ccggaaagga gcggatccgt cggaagagcc cgccactcgc cactcgccat tcgaacgaac 361 ccatcaacag ccgcaggagg ggccttcgct tccctgcttc aactgccctt tgaaagccaa 421 ggactaaagt cacacggtca cgggtcaaca tgctgatcaa ggagtaccgc attccactgc 481 ccctcaccgt ggaggagtac cgcatcgccc agctctacat gatagcgaaa aagagtcgcg 541 aggagagtca tggcgagggc agtggggttg agattatcat caatgagccc tataaggacg 601 gtcccggggg aaatggtcag tacacgaaga agatctacca tgtgggcaat catctgccag 661 gctggatcaa gagtcttttg cccaagagcg ctttaaccgt ggaggaggag gcctggaatg 721 cctatcccta taccaggact cgctacacct gcccatttgt ggagaagttc tcgctggaca 781 ttgagacata ctattacccg gataatggct accaggataa tgtctttcag ttgtccggaa 841 gcgatctgcg taaccgcatc gtggatgtaa ttgacattgt gaaggaccag ctgtggggcg 901 gcgattatgt caaggaggag gatcccaagc acttcgtgtc ggacaagacg ggccgcggac 961 ctctgggcga ggactggctg gaggagtact ggcgcgaggt gaagggcaag aagcagccga 1021 cgccccgcaa catgtccctg atgaccgcct acaagatctg ccgcgtggag ttccgctact 1081 ggggcatgca gacgaagctg gaaaagttca tccacgacgt ggcgctgcgc aagatgatgc 1141 tgcgcgccca tcggcaggcg tgggcgtggc aggacgagtg gttcggcctg accatcgagg 1201 atatccgcga gctggagcgc cagacccaac tggccctggc caagaaaatg ggcggtggcg 1261 aggagtgcag cgacgatagc acttcggaac cctatgtgag cacggcggtc accgccgcct 1321 ccacaacggg cagcgaacgg aagaaatccg ctccggccgt gccgcccatc gtaacccaac 1381 agccgcccag cgcggaggcc agttcggatg aggaggaggg cgaggaggag gacgacgacg 1441 aggacgagaa cgatgccatt ggcacgggcg tcgatctgtc cgccaatcaa ggtggatccg 1501 cccaaaggtc ccgatcccag agcatccaga tggcgcagaa gggcaaattc gggtccaagg 1561 gggccctcca ttcgcccgtg ggatctgccc acagctttga tctccagtcc aaaaagccgc 1621 atgcaaagac agcgccacgc agacatgtgg caaactggcg catggagcga ttggaagtgg 1681 actccaaatc caattcggat gaagaattct tcgactgttt ggacaccaat gagacgaact 1741 cgctggccaa gtggagctcc ctggagctgc tgggcgaggg cgacgacagt ccgccgccgc 1801 atggcggacc ctccagcgct gcctccgtgg gcggacgagg cagctcgcgg caggaggaca 1861 gcatcttcaa ccaggacttc ctgatgcgcg tggcctcgga gcgtgggaac aagcggcaat 1921 tgcgctcctc ggccagcgtg gatcgcagcc acgactcgtc gccgccgggc tcgccgagca 1981 caccgtcatg ccccacaacc atcctgatcc tggtggtcca tgcgggcagt gttttggatg 2041 cggccagcga gctgacggcc aagaaatcgg atgtcaccac ctttcgcggc tccttcgagg 2101 cggtgatgcg tcagcactac ccgagcctgc tcacccatgt gaccatcaag atggtgccgt 2161 gtccctcgat ctgcaccgac gccctgggca tcctctccag cctgagtccg tactccttcg 2221 atgcctcccc ctcggcggcg gatataccga atatagccga cgttccgatc ggtgcgatac 2281 ctctcctctc agttgcttcg ccggaattcc atgagacggt caacaagacg gtggccgctg 2341 cgaatatagt gtaccacgaa ttcttgaagt cggaggaggg ccacggattc tccggacaga 2401 ttgtgatgct gggcgattcg atgggctcgc tgctggccta cgaggcgctc tgccgatcga 2461 atggcagcca gccgggcaca gcctcgaatt ccggcggaga tgcggcggcc agcaatgtga 2521 atacccacaa tccgctgggc gctcgccatt cgcgtttgga cgacgacgag cggttcatcg 2581 aggccgatct ggatgccaag cggctgctgg tggccccgtc gccgcgtcgt cgccgttcca 2641 gctcctcgag cgactcgcgg gccagcaaac tggactttga ggtctgcgac ttcttcatgt 2701 tcggctcgcc gctgtcggtg gtgctggcgg cgcggaaact gcacgatgcc aaggccgctc 2761 tggcccggcc gaactgccat caggtgtaca atctgttcca tccaaccgat ccgattgcct 2821 cgcgtctgga gccgctgctc agcgcgagat tctccatttt ggcgccggtt aatgtgcccc 2881 ggtatgccaa gtatccgctg ggaaatggtc agccattgca tttattggag gtgattcagt 2941 cgcatccgca gcactttaac gatggcaaca acctgttggc cggaagacga ctctcggatg 3001 cctcgatgca gagcacgata tcgggtctga ttgagaatgt ctcgcttagt acgatccatg 3061 cccttcaaaa caaatggtgg ggcaccaagc gcttggacta cgccctctat tgccccgagg 3121 gactgagcaa ctttccggcc cacgccttgc cgcatctctt ccacgccagc tactgggaga 3181 gcccggatgt gattgcgttc atcctgcggc agattggcaa attcgagggc ataccctttg 3241 tgggctccaa tgacgacaag gacaacgcct cctttcaccc aggacagccg cgcgagaagt 3301 ggatcaagaa gcgcacctcg gtgaagctga aaaatgttgc ggccaatcat cgggccaacg 3361 atgtgatcgt ccaggagggc agggagcagc ggctgaatgc ccgcttcatg tacggacccc 3421 tcgacatgat cacgctgcac ggcgagaagg tggatgtgca catcatgaag gatccgccgg 3481 cgggcgaatg gacattcctc agcaccgagg tgacggacaa gaacggtcgc atctcgtaca 3541 gcattccgga tcagttgtcc ctcggctatg gcatctatcc ggtcaagatg gtcgtccgcg 3601 gcgatcacac ctcggtggat tgctacatgg cggtggtgcc gcctttgacc gagtgcgtgg 3661 tcttcagcat cgatggctcc ttcaccgcct cgatgtcggt gacgggcagg gatcccaaag 3721 ttcgggccgg cgccgtcgac gtctgccggc actggcagga gctgggctac ctgctgatct 3781 acatcaccgg acgacccgac atgcagcagc agcgcgtcgt ctcctggctg agccagcaca 3841 acttccccca cggcctcatc tcgttcgccg acggcctgtc caccgatccg ctgggccaca 3901 agacggccta tctcaacaac ctggtgcaga accacggaat ctcaatcacc gccgcctacg 3961 gcagcagcaa ggacatcagt gtctacacga atgtgggcat gcgaaccgat cagatcttca 4021 tcgtgggcaa ggtcggcaag aaactgcagt ccaatgccac tgtgctgagc gatggctacg 4081 ccgcccactt ggccggtttg caggcggtgg gtggttcgcg tccagccaag ggcaatgccc 4141 gcatggtcat cccccgcgga tgcttcaatc ttcccggcca gacggcgaat ccgcgacgca 4201 gaaggtacct ggaaagaaag actgtttcct cctgttgttt gatggttttt caaaccactt 4261 aaagcataaa aaaacattga aaactacacg aaacaaaagc cgattgtaaa gctatatact 4321 aaatacaatt ataaaaaaga tatatacaag gatatattca gaatatagaa ccgtttaaca 4381 tatgcaagcg aacaaagttc aagaaaccac gtgaggtaca acaactgaag gacaaactaa 4441 tggaaccgaa gatctcccga tcgataagga tacaactaag acaaggacga gcggaaagcg 4501 ttgcaaaatc aaaaggcaaa tttaatgcat ttcttgacaa aacaaccaca acaaactctt 4561 acgaaaagta taaattaacg gcttccgtaa accaaacaaa aacctaaaac taaaaatata 4621 tatctatatg tatgcgtgta aaattgacaa aaaaacggtt cttaagaaga aactaaaatc 4681 ttcatgaaat tgaatacaat ctattacctg gccccagaaa tttgaaatct ccataattgt 4741 gatagtcttt cgctaccaaa agttaattta aaaagaaaag gaaaaacagc aaaatatata 4801 tttatctcta ctaaaattgt tattcgaaaa gaaactattg gatattgtgt aaaaaatgta 4861 taacaaaaaa ccaaaaaacc cgattttgtg ataccaaaac taaaaccgaa actgaaacca 4921 aatttgagtt cgagatgaga tcaagccgaa agctcctcgt gttagaaacc tatacaaaca 4981 actcaaggcg acctgaagat gtaacgggca tggaatctga cccatatatt actatatata 5041 tatatatgca taacccagtt atgtgctgtc cacacaagtt aactaaaaac tctcacacaa 5101 ctcgaaagca aaataaatct cagctataaa ccagataaca ctgaattaga ggtacaaaag 5161 ggaccttaaa acgagaaaaa tatatatgta atctgttcga tctgtttagg tttacctaag 5221 ccaaagttgg ttaactatcg agtagtcgag atacgccagt aagatacttc ctaaactgaa 5281 atataaacgc aaattgaaga gtttaaaccg atagttgtaa cgagaacaga gtaattgtat 5341 gtaaagataa agatatatat atatatacct acactatata ctgtatattt atctagcgca 5401 actacattaa ggacttttga agcttgctaa ctgacaaaaa gtgttccgat caaagtattg 5461 tccggctata cgttcctctc tcctccattt gagtcgactt tcaactctct tttattttcc 5521 tgtagcgagt attcaactaa aaaccgatgg aagatccact agaatttaag atcaatctct 5581 gcctaagaag agtttatcct atataagtac gtagcaagtt ggttcagcgt gaggtattaa 5641 ggtattaaat aacactccag atactcgtag agtccaaagg tttatgtctg tctaattagt 5701 tggtaaatta atggcatttc tgtattatta ttttatactg ttcttggaaa cttttgaatc 5761 tcttccccac caaaaaatat gaaaactttt ctttcttcag ggtcagaagt ttaagacttt 5821 acacaatggg ttatacttga ttgttctatg gaatcctaaa atttcatatt aatccattga 5881 tttgttcctg atttatcgta gcaatttgta cacttccaca tcctacagtt ccatttatct 5941 ccaaagtaag aactaccaaa gccaataaaa agttgagcta aattgtattg atattttgag 6001 aacccaccat ttagattaag ctaaagtccc cactaatgca gagaatataa tcaaagaaca 6061 aaacactcta agcaaaaaca atgaaaaggt ttaaaatact acaagcaaat aggtaaatat 6121 atgtccgtgt ggctatgtat tctaattgtt aagtgcaaaa gtccaggaat aacgaatacg 6181 aattcagatg gtaaacaatt ataaagagag cgaggcgaac aaaatatgga attatttatt 6241 gacaacaaaa tctacaagtc gaagaactaa aaaacaaaaa tgaggagcaa gccaaatgca 6301 atctatttac aaaatcctac aaaaacctaa ggcgaggcag aaatgacaaa cagaagagtt 6361 aaagatagct gatccgacaa aaataaagat atatatatat gtatatgaac accagagatt 6421 tttaagccaa ttgttgaaat tggactatga caaataacaa aagtaaacaa attgaaatat 6481 ggcagtaaca gatatttttc gatgtaagct gtttgttaga aaatgatcga gtttcagcga 6541 aatgatatgt ggccaaaacc agttaatcat ttcacagaaa atcgaaaaca aagcggttca 6601 tgaaaagata acaaaaaaaa aaaacctaaa caaaaacaaa tgttct