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LOCUS XM_070218228 4587 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_070218228 VERSION XM_070218228.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4587 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4587 /gene="rdgB" /note="retinal degeneration B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054546" CDS 450..4277 /gene="rdgB" /codon_start=1 /product="protein retinal degeneration B isoform X3" /protein_id="XP_070074329.1" /db_xref="GeneID:108054546" /translation="MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIII NEPYKDGPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCP FVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYVKEEDPK HFVSDKTGRGPLGEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWGMQTKLE KFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQLALAKKMGGGEECSDD STSEPYVSTAVTAASTTGSERKKSAPAVPPIVTQQPPSAEASSDEEEGEEEDDDEDEN DAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDLQSKKPHA KTAPRRHVANWRMERLEVDSKSNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPP HGGPSSAASVGGRGSSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGS PSTPSCPTTILILVVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTI KMVPCPSICTDALGILSSLSPYSFDASPSAADIPNIADVPIGAIPLLSVASPEFHETV NKTVAAANIVYHEFLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSNGSQPGTASNSG GDAAASNVNTHNPLGARHSRLDDDERFIEADLDAKRLLVAPSPRRRRSSSSSDSRASK LDFEVCDFFMFGSPLSVVLAARKLHDAKAALARPNCHQVYNLFHPTDPIASRLEPLLS ARFSILAPVNVPRYAKYPLGNGQPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQST ISGLIENVSLSTIHALQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASYWESPDV IAFILRQIGKFEGIPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLKNVAANHRANDV IVQEGREQRLNARFMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRISY SIPDQLSLGYGIYPVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTASMSVTGRD PKVRAGAVDVCRHWQELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTD PLGHKTAYLNNLVQNHGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNAT VLSDGYAAHLAGLQAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRSNETGLSSPIR SGYLKRKTYLSHH" misc_feature 450..1253 /gene="rdgB" /note="Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs); Region: SRPBCC_PITPNM1-2_like; cd08889" /db_xref="CDD:176898" misc_feature order(510..515,522..524,534..536,543..545,567..569, 624..626,630..632,636..638,642..644,651..653,657..659, 666..668,678..680,690..695,699..701,705..707,711..713, 717..719,732..734,738..740,744..746,753..758,774..776, 780..782,1053..1055,1071..1073,1077..1079,1107..1109, 1131..1139,1146..1148) /gene="rdgB" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176898" misc_feature 642..698 /gene="rdgB" /note="putative lipid exchange loop [active]" /db_xref="CDD:176898" misc_feature order(801..890,906..980,1035..1040) /gene="rdgB" /note="putatative regulatory loop [active]" /db_xref="CDD:176898" misc_feature 939..941 /gene="rdgB" /note="putative PKC phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:176898" misc_feature 2670..3215 /gene="rdgB" /note="DDHD domain; Region: DDHD; pfam02862" /db_xref="CDD:460725" misc_feature 3657..4052 /gene="rdgB" /note="This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; Region: LNS2; smart00775" /db_xref="CDD:197870" ORIGIN 1 ttaaatgtca catacacagg cagaagccat agcaactagc acacctacat ctctagacct 61 gtacaaaacc cgccccactg cccccggaaa aatatctaca gaccgctgac taacctcgcc 121 tcgttttccg ttttccattt tccgatttcc tcattccgtc caggtcatag acgacgcctc 181 gccccgcacc caagcacccc gaaagtgtcg gacgacagcg tcgcctccac gtcatccagc 241 catgaccagc ggcaatcgat gattgccatt ccctcagcca acgagagcca atagaggcag 301 ccggaaagga gcggatccgt cggaagagcc cgccactcgc cactcgccat tcgaacgaac 361 ccatcaacag ccgcaggagg ggccttcgct tccctgcttc aactgccctt tgaaagccaa 421 ggactaaagt cacacggtca cgggtcaaca tgctgatcaa ggagtaccgc attccactgc 481 ccctcaccgt ggaggagtac cgcatcgccc agctctacat gatagcgaaa aagagtcgcg 541 aggagagtca tggcgagggc agtggggttg agattatcat caatgagccc tataaggacg 601 gtcccggggg aaatggtcag tacacgaaga agatctacca tgtgggcaat catctgccag 661 gctggatcaa gagtcttttg cccaagagcg ctttaaccgt ggaggaggag gcctggaatg 721 cctatcccta taccaggact cgctacacct gcccatttgt ggagaagttc tcgctggaca 781 ttgagacata ctattacccg gataatggct accaggataa tgtctttcag ttgtccggaa 841 gcgatctgcg taaccgcatc gtggatgtaa ttgacattgt gaaggaccag ctgtggggcg 901 gcgattatgt caaggaggag gatcccaagc acttcgtgtc ggacaagacg ggccgcggac 961 ctctgggcga ggactggctg gaggagtact ggcgcgaggt gaagggcaag aagcagccga 1021 cgccccgcaa catgtccctg atgaccgcct acaagatctg ccgcgtggag ttccgctact 1081 ggggcatgca gacgaagctg gaaaagttca tccacgacgt ggcgctgcgc aagatgatgc 1141 tgcgcgccca tcggcaggcg tgggcgtggc aggacgagtg gttcggcctg accatcgagg 1201 atatccgcga gctggagcgc cagacccaac tggccctggc caagaaaatg ggcggtggcg 1261 aggagtgcag cgacgatagc acttcggaac cctatgtgag cacggcggtc accgccgcct 1321 ccacaacggg cagcgaacgg aagaaatccg ctccggccgt gccgcccatc gtaacccaac 1381 agccgcccag cgcggaggcc agttcggatg aggaggaggg cgaggaggag gacgacgacg 1441 aggacgagaa cgatgccatt ggcacgggcg tcgatctgtc cgccaatcaa ggtggatccg 1501 cccaaaggtc ccgatcccag agcatccaga tggcgcagaa gggcaaattc gggtccaagg 1561 gggccctcca ttcgcccgtg ggatctgccc acagctttga tctccagtcc aaaaagccgc 1621 atgcaaagac agcgccacgc agacatgtgg caaactggcg catggagcga ttggaagtgg 1681 actccaaatc caattcggat gaagaattct tcgactgttt ggacaccaat gagacgaact 1741 cgctggccaa gtggagctcc ctggagctgc tgggcgaggg cgacgacagt ccgccgccgc 1801 atggcggacc ctccagcgct gcctccgtgg gcggacgagg cagctcgcgg caggaggaca 1861 gcatcttcaa ccaggacttc ctgatgcgcg tggcctcgga gcgtgggaac aagcggcaat 1921 tgcgctcctc ggccagcgtg gatcgcagcc acgactcgtc gccgccgggc tcgccgagca 1981 caccgtcatg ccccacaacc atcctgatcc tggtggtcca tgcgggcagt gttttggatg 2041 cggccagcga gctgacggcc aagaaatcgg atgtcaccac ctttcgcggc tccttcgagg 2101 cggtgatgcg tcagcactac ccgagcctgc tcacccatgt gaccatcaag atggtgccgt 2161 gtccctcgat ctgcaccgac gccctgggca tcctctccag cctgagtccg tactccttcg 2221 atgcctcccc ctcggcggcg gatataccga atatagccga cgttccgatc ggtgcgatac 2281 ctctcctctc agttgcttcg ccggaattcc atgagacggt caacaagacg gtggccgctg 2341 cgaatatagt gtaccacgaa ttcttgaagt cggaggaggg ccacggattc tccggacaga 2401 ttgtgatgct gggcgattcg atgggctcgc tgctggccta cgaggcgctc tgccgatcga 2461 atggcagcca gccgggcaca gcctcgaatt ccggcggaga tgcggcggcc agcaatgtga 2521 atacccacaa tccgctgggc gctcgccatt cgcgtttgga cgacgacgag cggttcatcg 2581 aggccgatct ggatgccaag cggctgctgg tggccccgtc gccgcgtcgt cgccgttcca 2641 gctcctcgag cgactcgcgg gccagcaaac tggactttga ggtctgcgac ttcttcatgt 2701 tcggctcgcc gctgtcggtg gtgctggcgg cgcggaaact gcacgatgcc aaggccgctc 2761 tggcccggcc gaactgccat caggtgtaca atctgttcca tccaaccgat ccgattgcct 2821 cgcgtctgga gccgctgctc agcgcgagat tctccatttt ggcgccggtt aatgtgcccc 2881 ggtatgccaa gtatccgctg ggaaatggtc agccattgca tttattggag gtgattcagt 2941 cgcatccgca gcactttaac gatggcaaca acctgttggc cggaagacga ctctcggatg 3001 cctcgatgca gagcacgata tcgggtctga ttgagaatgt ctcgcttagt acgatccatg 3061 cccttcaaaa caaatggtgg ggcaccaagc gcttggacta cgccctctat tgccccgagg 3121 gactgagcaa ctttccggcc cacgccttgc cgcatctctt ccacgccagc tactgggaga 3181 gcccggatgt gattgcgttc atcctgcggc agattggcaa attcgagggc ataccctttg 3241 tgggctccaa tgacgacaag gacaacgcct cctttcaccc aggacagccg cgcgagaagt 3301 ggatcaagaa gcgcacctcg gtgaagctga aaaatgttgc ggccaatcat cgggccaacg 3361 atgtgatcgt ccaggagggc agggagcagc ggctgaatgc ccgcttcatg tacggacccc 3421 tcgacatgat cacgctgcac ggcgagaagg tggatgtgca catcatgaag gatccgccgg 3481 cgggcgaatg gacattcctc agcaccgagg tgacggacaa gaacggtcgc atctcgtaca 3541 gcattccgga tcagttgtcc ctcggctatg gcatctatcc ggtcaagatg gtcgtccgcg 3601 gcgatcacac ctcggtggat tgctacatgg cggtggtgcc gcctttgacc gagtgcgtgg 3661 tcttcagcat cgatggctcc ttcaccgcct cgatgtcggt gacgggcagg gatcccaaag 3721 ttcgggccgg cgccgtcgac gtctgccggc actggcagga gctgggctac ctgctgatct 3781 acatcaccgg acgacccgac atgcagcagc agcgcgtcgt ctcctggctg agccagcaca 3841 acttccccca cggcctcatc tcgttcgccg acggcctgtc caccgatccg ctgggccaca 3901 agacggccta tctcaacaac ctggtgcaga accacggaat ctcaatcacc gccgcctacg 3961 gcagcagcaa ggacatcagt gtctacacga atgtgggcat gcgaaccgat cagatcttca 4021 tcgtgggcaa ggtcggcaag aaactgcagt ccaatgccac tgtgctgagc gatggctacg 4081 ccgcccactt ggccggtttg caggcggtgg gtggttcgcg tccagccaag ggcaatgccc 4141 gcatggtcat cccccgcgga tgcttcaatc ttcccggcca gacggcgaat ccgcgacgca 4201 gaagcaacga gacgggactt tcatcaccca tacgcagtgg ttacctgaag cgcaagacct 4261 acctgagcca ccactagagc aacagagatg cagctactta gattgatcca tcagacaaaa 4321 tgaaatcaaa tcaaatcaaa tatcccccaa gaacccaaat agaactccct tcgaaataga 4381 aaacagaaat atagccagag gactacagca tcgatgcctc catatgccac atctgtgtat 4441 ataccatata tatctatata tatttatata ctatgcgcga tatattgaaa gttcaatggt 4501 gtaatatata tcaaaaacaa aaaccaaatt tgcaaatgag aaaaaacaat tgtacaacat 4561 ttaaccaaag tcaaatgtgt cacgcgg