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LOCUS XM_070218227 4675 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218227 VERSION XM_070218227.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4675 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4675 /gene="rdgB" /note="retinal degeneration B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108054546" CDS 450..4298 /gene="rdgB" /codon_start=1 /product="protein retinal degeneration B isoform X2" /protein_id="XP_070074328.1" /db_xref="GeneID:108054546" /translation="MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIII NEPYKDGPGGNGQYTKKIYHVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCP FVEKFSLDIETYYYPDNGYQDNVFQLSGSDLRNRIVDVIDIVKDQLWGGDYVKEEDPK HFVSDKTGRGPLGEDWLEEYWREVKGKKQPTPRNMSLMTAYKICRVEFRYWGMQTKLE KFIHDVALRKMMLRAHRQAWAWQDEWFGLTIEDIRELERQTQLALAKKMGGGEECSDD STSEPYVSTAVTAASTTGSERKKSAPAVPPIVTQQPPSAEASSDEEEGEEEDDDEDEN DAIGTGVDLSANQGGSAQRSRSQSIQMAQKGKFGSKGALHSPVGSAHSFDLQVANWRM ERLEVDSKSNSDEEFFDCLDTNETNSLAKWSSLELLGEGDDSPPPHGGPSSAASVGGR GSSRQEDSIFNQDFLMRVASERGNKRQLRSSASVDRSHDSSPPGSPSTPSCPTTILIL VVHAGSVLDAASELTAKKSDVTTFRGSFEAVMRQHYPSLLTHVTIKMVPCPSICTDAL GILSSLSPYSFDASPSAADIPNIADVPIGAIPLLSVASPEFHETVNKTVAAANIVYHE FLKSEEGHGFSGQIVMLGDSMGSLLAYEALCRSNGSQPGTASNSGGDAAASNVNTHNP LGARHSRLDDDERFIEADLDAKRLLVAPSPRRRRSSSSSDSRASKLDFEVCDFFMFGS PLSVVLAARKLHDAKAALARPNCHQVYNLFHPTDPIASRLEPLLSARFSILAPVNVPR YAKYPLGNGQPLHLLEVIQSHPQHFNDGNNLLAGRRLSDASMQSTISGLIENVSLSTI HALQNKWWGTKRLDYALYCPEGLSNFPAHALPHLFHASYWESPDVIAFILRQIGKFEG IPFVGSNDDKDNASFHPGQPREKWIKKRTSVKLKNVAANHRANDVIVQEGREQRLNAR FMYGPLDMITLHGEKVDVHIMKDPPAGEWTFLSTEVTDKNGRISYSIPDQLSLGYGIY PVKMVVRGDHTSVDCYMAVVPPLTECVVFSIDGSFTASMSVTGRDPKVRAGAVDVCRH WQELGYLLIYITGRPDMQQQRVVSWLSQHNFPHGLISFADGLSTDPLGHKTAYLNNLV QNHGISITAAYGSSKDISVYTNVGMRTDQIFIVGKVGKKLQSNATVLSDGYAAHLAGL QAVGGSRPAKGNARMVIPRGCFNLPGQTANPRRRSNAFELQLANISPCSSNINSPGSS NHILLAQLIENAIEKDTPAA" misc_feature 450..1253 /gene="rdgB" /note="Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs); Region: SRPBCC_PITPNM1-2_like; cd08889" /db_xref="CDD:176898" misc_feature order(510..515,522..524,534..536,543..545,567..569, 624..626,630..632,636..638,642..644,651..653,657..659, 666..668,678..680,690..695,699..701,705..707,711..713, 717..719,732..734,738..740,744..746,753..758,774..776, 780..782,1053..1055,1071..1073,1077..1079,1107..1109, 1131..1139,1146..1148) /gene="rdgB" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176898" misc_feature 642..698 /gene="rdgB" /note="putative lipid exchange loop [active]" /db_xref="CDD:176898" misc_feature order(801..890,906..980,1035..1040) /gene="rdgB" /note="putatative regulatory loop [active]" /db_xref="CDD:176898" misc_feature 939..941 /gene="rdgB" /note="putative PKC phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:176898" misc_feature 2631..3176 /gene="rdgB" /note="DDHD domain; Region: DDHD; pfam02862" /db_xref="CDD:460725" misc_feature 3618..4013 /gene="rdgB" /note="This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins; Region: LNS2; smart00775" /db_xref="CDD:197870" polyA_site 4675 /gene="rdgB" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttaaatgtca catacacagg cagaagccat agcaactagc acacctacat ctctagacct 61 gtacaaaacc cgccccactg cccccggaaa aatatctaca gaccgctgac taacctcgcc 121 tcgttttccg ttttccattt tccgatttcc tcattccgtc caggtcatag acgacgcctc 181 gccccgcacc caagcacccc gaaagtgtcg gacgacagcg tcgcctccac gtcatccagc 241 catgaccagc ggcaatcgat gattgccatt ccctcagcca acgagagcca atagaggcag 301 ccggaaagga gcggatccgt cggaagagcc cgccactcgc cactcgccat tcgaacgaac 361 ccatcaacag ccgcaggagg ggccttcgct tccctgcttc aactgccctt tgaaagccaa 421 ggactaaagt cacacggtca cgggtcaaca tgctgatcaa ggagtaccgc attccactgc 481 ccctcaccgt ggaggagtac cgcatcgccc agctctacat gatagcgaaa aagagtcgcg 541 aggagagtca tggcgagggc agtggggttg agattatcat caatgagccc tataaggacg 601 gtcccggggg aaatggtcag tacacgaaga agatctacca tgtgggcaat catctgccag 661 gctggatcaa gagtcttttg cccaagagcg ctttaaccgt ggaggaggag gcctggaatg 721 cctatcccta taccaggact cgctacacct gcccatttgt ggagaagttc tcgctggaca 781 ttgagacata ctattacccg gataatggct accaggataa tgtctttcag ttgtccggaa 841 gcgatctgcg taaccgcatc gtggatgtaa ttgacattgt gaaggaccag ctgtggggcg 901 gcgattatgt caaggaggag gatcccaagc acttcgtgtc ggacaagacg ggccgcggac 961 ctctgggcga ggactggctg gaggagtact ggcgcgaggt gaagggcaag aagcagccga 1021 cgccccgcaa catgtccctg atgaccgcct acaagatctg ccgcgtggag ttccgctact 1081 ggggcatgca gacgaagctg gaaaagttca tccacgacgt ggcgctgcgc aagatgatgc 1141 tgcgcgccca tcggcaggcg tgggcgtggc aggacgagtg gttcggcctg accatcgagg 1201 atatccgcga gctggagcgc cagacccaac tggccctggc caagaaaatg ggcggtggcg 1261 aggagtgcag cgacgatagc acttcggaac cctatgtgag cacggcggtc accgccgcct 1321 ccacaacggg cagcgaacgg aagaaatccg ctccggccgt gccgcccatc gtaacccaac 1381 agccgcccag cgcggaggcc agttcggatg aggaggaggg cgaggaggag gacgacgacg 1441 aggacgagaa cgatgccatt ggcacgggcg tcgatctgtc cgccaatcaa ggtggatccg 1501 cccaaaggtc ccgatcccag agcatccaga tggcgcagaa gggcaaattc gggtccaagg 1561 gggccctcca ttcgcccgtg ggatctgccc acagctttga tctccaggtg gcaaactggc 1621 gcatggagcg attggaagtg gactccaaat ccaattcgga tgaagaattc ttcgactgtt 1681 tggacaccaa tgagacgaac tcgctggcca agtggagctc cctggagctg ctgggcgagg 1741 gcgacgacag tccgccgccg catggcggac cctccagcgc tgcctccgtg ggcggacgag 1801 gcagctcgcg gcaggaggac agcatcttca accaggactt cctgatgcgc gtggcctcgg 1861 agcgtgggaa caagcggcaa ttgcgctcct cggccagcgt ggatcgcagc cacgactcgt 1921 cgccgccggg ctcgccgagc acaccgtcat gccccacaac catcctgatc ctggtggtcc 1981 atgcgggcag tgttttggat gcggccagcg agctgacggc caagaaatcg gatgtcacca 2041 cctttcgcgg ctccttcgag gcggtgatgc gtcagcacta cccgagcctg ctcacccatg 2101 tgaccatcaa gatggtgccg tgtccctcga tctgcaccga cgccctgggc atcctctcca 2161 gcctgagtcc gtactccttc gatgcctccc cctcggcggc ggatataccg aatatagccg 2221 acgttccgat cggtgcgata cctctcctct cagttgcttc gccggaattc catgagacgg 2281 tcaacaagac ggtggccgct gcgaatatag tgtaccacga attcttgaag tcggaggagg 2341 gccacggatt ctccggacag attgtgatgc tgggcgattc gatgggctcg ctgctggcct 2401 acgaggcgct ctgccgatcg aatggcagcc agccgggcac agcctcgaat tccggcggag 2461 atgcggcggc cagcaatgtg aatacccaca atccgctggg cgctcgccat tcgcgtttgg 2521 acgacgacga gcggttcatc gaggccgatc tggatgccaa gcggctgctg gtggccccgt 2581 cgccgcgtcg tcgccgttcc agctcctcga gcgactcgcg ggccagcaaa ctggactttg 2641 aggtctgcga cttcttcatg ttcggctcgc cgctgtcggt ggtgctggcg gcgcggaaac 2701 tgcacgatgc caaggccgct ctggcccggc cgaactgcca tcaggtgtac aatctgttcc 2761 atccaaccga tccgattgcc tcgcgtctgg agccgctgct cagcgcgaga ttctccattt 2821 tggcgccggt taatgtgccc cggtatgcca agtatccgct gggaaatggt cagccattgc 2881 atttattgga ggtgattcag tcgcatccgc agcactttaa cgatggcaac aacctgttgg 2941 ccggaagacg actctcggat gcctcgatgc agagcacgat atcgggtctg attgagaatg 3001 tctcgcttag tacgatccat gcccttcaaa acaaatggtg gggcaccaag cgcttggact 3061 acgccctcta ttgccccgag ggactgagca actttccggc ccacgccttg ccgcatctct 3121 tccacgccag ctactgggag agcccggatg tgattgcgtt catcctgcgg cagattggca 3181 aattcgaggg catacccttt gtgggctcca atgacgacaa ggacaacgcc tcctttcacc 3241 caggacagcc gcgcgagaag tggatcaaga agcgcacctc ggtgaagctg aaaaatgttg 3301 cggccaatca tcgggccaac gatgtgatcg tccaggaggg cagggagcag cggctgaatg 3361 cccgcttcat gtacggaccc ctcgacatga tcacgctgca cggcgagaag gtggatgtgc 3421 acatcatgaa ggatccgccg gcgggcgaat ggacattcct cagcaccgag gtgacggaca 3481 agaacggtcg catctcgtac agcattccgg atcagttgtc cctcggctat ggcatctatc 3541 cggtcaagat ggtcgtccgc ggcgatcaca cctcggtgga ttgctacatg gcggtggtgc 3601 cgcctttgac cgagtgcgtg gtcttcagca tcgatggctc cttcaccgcc tcgatgtcgg 3661 tgacgggcag ggatcccaaa gttcgggccg gcgccgtcga cgtctgccgg cactggcagg 3721 agctgggcta cctgctgatc tacatcaccg gacgacccga catgcagcag cagcgcgtcg 3781 tctcctggct gagccagcac aacttccccc acggcctcat ctcgttcgcc gacggcctgt 3841 ccaccgatcc gctgggccac aagacggcct atctcaacaa cctggtgcag aaccacggaa 3901 tctcaatcac cgccgcctac ggcagcagca aggacatcag tgtctacacg aatgtgggca 3961 tgcgaaccga tcagatcttc atcgtgggca aggtcggcaa gaaactgcag tccaatgcca 4021 ctgtgctgag cgatggctac gccgcccact tggccggttt gcaggcggtg ggtggttcgc 4081 gtccagccaa gggcaatgcc cgcatggtca tcccccgcgg atgcttcaat cttcccggcc 4141 agacggcgaa tccgcgacgc agaagcaacg ctttcgagct gcaattggcc aacatcagtc 4201 cctgcagcag caacatcaac agtcccggca gcagcaacca catcctactg gcccagctga 4261 ttgagaatgc cattgaaaag gacaccccag ctgcctagga gaactagatg aagatgctta 4321 catatttctt gttttgattt taagttaata gtctcatcca tcctctcaaa actagtccgc 4381 cacgaatcgt attgtattgt attttattct attttaaagt cttaagtttc ctaagtttca 4441 cgtagaacaa atgccgtatt atttatgata taagttatta ctattatgat tattattatt 4501 attgtaatta ttaccgcctt tatgtactat ccttatttgt atttgtatga tattattttg 4561 attgcgaaca aaagccaaaa tgcaacaaaa cataagaaat acgtacgcca gtatgtagta 4621 ccaaataaac aaaagcagta cagtaaatgg gcctgttgaa aatatatata tctta