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LOCUS XM_070218226 7268 bp mRNA linear INV 09-DEC-2024 entrainment (nocte), transcript variant X3, mRNA. ACCESSION XM_070218226 VERSION XM_070218226.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7268 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7268 /gene="nocte" /note="no circadian temperature entrainment; Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108060861" CDS 793..6882 /gene="nocte" /codon_start=1 /product="neurogenic protein mastermind isoform X2" /protein_id="XP_070074327.1" /db_xref="GeneID:108060861" /translation="MSTLGGSRGERNAKPKFTALDINRMYKNSRGESSEPSAQKNQVP RKHGMQILGKVPSARRPPANLPSLKAETHTSSNNNLLVSVEGATSGGAGAGGAAGQGA AGTNTSHNNTTAHSGSSGAGGGAGGGGAGAASSSAGGHHSQQQAHSQHNNNIAGKFIN SNSNNSSSSGGSGSSNNNKNYKLINNSVGSSSGGGGAGGSSGGSSGLGGSGGGSGSAT GGHSINSPKTWSAITTGHERGSGGGQHFGRQQQQQQVVPHYQSPQFQYEFPTLDGTVG SGAGGGGSGTGLGSGGGAGKGHYQSQTNHHQHQQQQQHHQQHQQHHQQHHRDYHHGHG RQYGHHSHRDYRDGSDDVGGGGSAELGELSLRPQNDTAAWLHQQEKAAKVAAAAAAAD QGINLQGPGHHQMGGGGNGGGAGGGGGGSGGAVPLPILSLMPSFMRSGAPLPSGASGA TAASILAGGSLDSSTLPSAPYQNGILGARSASPAVVGSGFRTATVLPKRPAASSSPPQ SGLGLGGSPTPSQSQQQQQQQANGGGGGRKDKDYVVEPEVAQMQRPIIREEDLERLNA IAKDDSWTKQDDIDYTKKLTFSDDESTPEEHQQGQAKQQQGSNDQRKLSSSWQRGKES TEQPAEVNQQEQQQQNQEIRQQNGHRGSSGNVGAPVAGGIALDASVYERVKQRKEEEE RREMERKQAAAKKLQELEMKMNSKKAAAAALAGEGSASASLASNEVPPPPSSAPLGNV SEDEGGGLHRRPRGSISSLSSNVAPAGGAVSSSSSAGGDYGQKTFLTHFQSNLPPRFQ RQQQQQQQQLPRLEKSASASSAFDSNSRYLQKGGVSGGSGASGGGGAQANAGRSISGG YGTQRGASVGGSGGYGRNRHDSSSAREEQQELEQQQQQQRFTRGQQDYRQAQALPRSI SENSHRKTSVSSAGDDVLGGSGSCSSWAEQTDAEQKVHHRHREESFSSSHSHDSAVQI KILQRPTRQPSLSEESSMPQKQLPASPQQQKTAAEPPMPTQILRRSVEIEKSVEERQT DDKSGLESSEDKSKAAGKLEEDKSGNKRPSPRSGAACGGRGGGRSYSGGSAVGSGSSY RGQRSSSDWGSNRGSGGGGRRYYGSGGEQSEHSEDVDEDCYSSGGGGGGAAGAARRSP KETAANSGGQAAVNKAGFSPRGEPSRRGRGGLSSGGGGGAGGSSSNYRRQPVGTGGSG SGSGRSYGRLGYEEYGKQRTSESEADLDKTKQNQLALSAGLHKPSGSSKDDNNKDSQP ALSGEETKDKTAPLAPAADELQKEAAGRLPPGLSPVGSTSPGSAAEKKKAGEGSSCAA VGGEKKLPAIGEKTSLGAVGSGPSTNLLLDAGAPVNTIIFENSTYKQQAAAAAVVPKP SATLTTVDSLSSALSQMSFGGKATATGAGEDPQEMKLGFTFGDDPTAPLKVVDSIEKT ASQQQQQQQQHSQQQQQQQNNSTADLNMKIASVKKVWESATPMSEQQQQQQQQSQVQQ PQQQQQQQQQQQQQQQQQVVGQQQQAGDDGSGHMSAASFVAAVAASQHQQQHQQMPHY AVSAVHMQQSHHHQQQQQQQAAAAVAAAQAQHHQQQQAQHHQQHHALSSPGPVPGNHG HGYGHGSPFDAGSLEQQFQQEDYPSPQQQQQQQQAHQKTKQLQQQQHLGMSPPPSQQQ QQQQQHSQQQQQAHQQQQPHQQPSFYQASPQFGVGGIPTIPSPPAVVFNSSQMPPPPS QGGNLYAPFHSLDHSSRSPAYSAAAAAAHSFPNHYAAAAAAAAAAAAGGGPFNVNVNA YATPTPDMYSNLSSQFRLGGGPGPGPGPFGQPSSQQLSQASNHAAVAIISSSSNSMMS SGAAKPPPSQQQIGAIGSKSAGSGGGGPGGPGGPGPGPYATTQQYMNLYAGPPPPQHP GQGGPPPGAHQLQSNSYYSNSAPGGPSGPQFYGGPPPPPQGNGGAQSYGLYGGHQGGP PGSNGPPGPPQSQHTMGTFNTQFMNSQLLTAASINQYRGGPTPGAAYLKGSQAQAHMQ DSFFVSKTNNSRP" misc_feature 793..>1047 /gene="nocte" /note="BAT2 N-terminus; Region: BAT2_N; pfam07001" /db_xref="CDD:462063" polyA_site 7268 /gene="nocte" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggctctcac tcacatctgg caacggtcgc cgcaaaatgg caaaaaaata atacatacga 61 tttaaaacta atggacaatt acgtattacg tgaaaagaac gcaacgcaag taatcaaaac 121 ccaattgcca atcagcccag ttggcgcgtg tgcgtgtgtg cgtagctgca gcgaaaatcc 181 gtgggaaaag tgattcaaac gggtttcaga atcggaaccg agcggagcac ttgggggccc 241 tcatctcacc cgataccatt ttccatctac acttgcgaaa agcgacagcg cgcgagagag 301 acggcgcgag tgagcggaga gggagagcgg tgagagttgc gttgcgagtg ccagcgagtg 361 cgagcgagag cgccgacaag ccagcgcaac atagcgaaaa tcgcaaccaa atcgaaattc 421 aagcaaatcg aagattctgg cgaacaaaga cgactgccag ccgcccacta gcgacaacaa 481 caacgctctc tttttgtttt cgttccgtgt ttcggccagc ggcgctgagt aagcgccaga 541 aagagtgcaa aaaaaaaaaa taagcgaagg cgagaagaaa gaagcccaag gagcaacgaa 601 ctgtgtttgc ggtgtgtgct ctgcgtgcga aaggcccacc agaaaaactg aaacaaggcg 661 atcccagctt gtaatcctcg ttctcacccc gagcaacagc cacatcctag cccatcctcc 721 agcgcagcgg gaagaagagg agcgcggcgg cggcgtgaag gaagctaacg ctaatgagga 781 tctattggca gcatgagtac actgggggga agtaggggag agcgaaatgc caagcccaaa 841 ttcacagcgt tggatataaa tcgcatgtac aagaatagcc gcggcgagtc gagtgaacca 901 tctgcacaaa agaatcaagt gccacgtaaa catggaatgc aaatcttggg caaagtgccg 961 tccgctaggc gaccaccagc caatctgcca tccctgaagg ccgagaccca taccagcagc 1021 aacaacaatc tcctagtctc agtcgaagga gccacatctg gaggagcggg cgcaggcgga 1081 gcagcgggac aaggagcggc gggaaccaac actagccaca acaacaccac tgcccacagc 1141 ggaagttcgg gagcgggagg cggagcggga ggaggaggag caggagctgc ctcgtcatct 1201 gctggaggcc atcatagcca gcagcaggct cacagccagc acaacaacaa cattgccgga 1261 aagttcatca acagcaacag caacaacagc agcagcagcg gcggcagcgg cagcagcaac 1321 aataataaaa actataaatt aatcaacaac tccgtgggca gctcctccgg cggaggagga 1381 gcaggtggat ccagcggcgg ttcgtcagga ttaggaggat caggaggcgg atcaggttcc 1441 gcaacaggcg gacactcgat caactcgccc aagacatggt ctgccatcac cacaggacac 1501 gaacgcggct caggcggcgg tcagcacttt ggccgccagc agcagcagca gcaggttgtg 1561 ccccactacc agagtccgca gttccagtac gagtttccca cgctggacgg cacagttggc 1621 agcggcgcag gcggcggtgg atcgggaact ggtctgggaa gcggcggtgg agcgggcaag 1681 ggccattatc agagccagac caatcaccac cagcatcagc agcagcagca gcatcaccag 1741 cagcatcaac agcaccacca gcagcaccat cgcgactacc accatggcca cggaaggcag 1801 tatggacacc actcgcatcg cgactacaga gatggcagcg acgacgtcgg cggcggtggc 1861 tccgcagagc ttggcgagct cagccttcgt ccgcagaacg acacggccgc ctggctgcat 1921 cagcaggaga aggcggccaa ggtggcggcg gcggcggcgg cagcggacca gggaatcaac 1981 ctacagggcc cgggccacca tcagatgggc ggaggaggaa atggaggcgg cgccggaggt 2041 ggaggtggag gttcgggcgg agctgtgccc ctgcccattc tctcactgat gccctcgttc 2101 atgcgcagcg gtgctccgtt gccctccgga gcctctggag cgacggctgc gagcattctg 2161 gccggcggtt ccctggattc gtcgactcta cccagcgctc cctatcagaa tggcatcctg 2221 ggagctcgtt ccgcctcgcc agcggtggtg ggcagcggct ttcgcacggc cactgtcctt 2281 cccaaacgac cagcggcctc ctcgtcgcca ccgcaatccg gactgggcct gggaggatcg 2341 cccactccgt cgcaatccca gcagcagcag cagcagcagg ccaacggcgg cggaggcggt 2401 cgcaaggata aggactatgt ggtggagccg gaggtggccc aaatgcagcg tcccatcatc 2461 cgcgaggagg atttagagcg cctgaacgcc atcgccaagg acgatagctg gaccaagcag 2521 gacgacattg actatacgaa gaagctaaca ttctcggacg acgagtccac gccggaggag 2581 caccagcagg ggcaggccaa gcagcagcag ggatcgaacg atcagcgcaa gctgtccagc 2641 agttggcagc gcggcaagga gagcactgag cagccagcgg aagttaatca gcaggagcag 2701 cagcagcaga atcaagagat tcgccagcag aacggtcatc gtggcagctc tggcaatgtg 2761 ggagcgccgg tggccggcgg aattgccctg gatgccagcg tttatgagcg cgtgaagcag 2821 cgcaaggagg aggaggagcg tcgcgagatg gaacgcaagc aggcggcggc caagaagctg 2881 caggaactcg agatgaagat gaacagcaag aaggcggcgg cagctgcttt ggcgggcgaa 2941 ggatcggcat ctgcatcgct ggcatccaat gaagtaccac cacccccttc ctccgcacca 3001 ctgggcaatg tgagcgaaga tgagggcggc ggactgcacc gcagaccaag gggaagcatc 3061 tccagtctaa gcagcaacgt ggctccagcg ggaggagctg tatcttcatc ctcatccgca 3121 ggcggcgact acggtcagaa gaccttcctc acccatttcc aatcgaatct gccgccccgc 3181 ttccagcgac agcagcagca gcaacagcag cagctgccgc gtttggagaa gagcgcttcg 3241 gcgagcagcg ccttcgatag caactcgcgt tacctgcaaa agggtggggt gagcggagga 3301 tccggcgcca gtggaggagg aggagcccag gcgaacgcag gtcgcagcat ttccggcggc 3361 tatggaacgc aaagaggtgc cagcgtggga ggaagtggag gatatggacg caaccggcac 3421 gacagcagca gtgctcgcga ggagcagcag gaactggagc agcagcagca gcagcagcgc 3481 ttcacccgcg gacagcagga ctaccgacag gcgcaggcgc tgccgcgcag catatcggag 3541 aattcgcacc gcaagacgag cgtctcgtcg gctggagatg atgtgctggg cggcagtggc 3601 tcctgctcct cgtgggccga gcaaacggat gccgagcaga aggtgcacca ccggcaccgc 3661 gaggagagct tctcctcgag ccacagccac gactcggcgg tgcagataaa gatcctccag 3721 cggccgacgc gccagcccag tctcagcgag gagtcctcga tgccgcagaa gcagctgccc 3781 gcctcgccgc agcagcaaaa gacggcggca gagcccccca tgcccacgca gattctgcga 3841 cgcagcgtgg agattgaaaa gtcggttgag gaaaggcaaa cggatgataa gtcgggctta 3901 gaatcatcag aggataaatc aaaggcagct ggtaagctag aggaggacaa gtccggtaat 3961 aagcgaccga gtcccaggag cggagcagcc tgcggtggac ggggaggagg tcgcagctac 4021 agtggaggat cggctgtagg atcgggaagt agttaccgag gacagcgaag ctccagcgac 4081 tggggaagca atcgtggaag cggcggcgga ggaagacgct actacggcag cggtggagag 4141 caatcagagc actctgaaga cgtcgatgag gattgctaca gcagtggagg cggcggagga 4201 ggagcagcag gagcagcgcg tcgcagtccc aaggaaactg cagccaattc cggtggtcaa 4261 gctgcggtaa acaaggcggg cttctcgcca cgcggcgaac cttcgcgacg aggacgcggt 4321 ggcctctcca gcggaggagg aggtggcgca ggaggatcct cttccaacta tcgtcgccaa 4381 cccgtgggca ccggtggctc cggctccgga tcaggtcgca gttatggtcg cctcggctac 4441 gaggagtacg gcaagcagcg cacctccgaa tcggaggcgg acctggacaa gaccaagcag 4501 aaccagctgg cactcagcgc tggactgcac aaacccagcg gcagcagcaa ggatgacaac 4561 aacaaggatt ctcagccggc gctgagcggc gaggagacga aggacaagac tgccccgctg 4621 gcaccggcag cagatgagtt gcagaaggag gcagcgggtc gcctgccacc tggtctctcg 4681 ccagtgggct ccacatcgcc tggatcggcg gcggagaaga agaaggcggg tgaaggatcc 4741 tcttgtgccg ctgtaggtgg tgaaaagaag ctgcccgcca tcggggagaa gacctcgctg 4801 ggcgccgtgg gctctggacc ctccaccaat ctcctgctag acgccggtgc acccgtcaac 4861 acgatcatct tcgagaactc cacgtacaag cagcaggcgg cggccgctgc cgtggttccc 4921 aagcccagcg ccaccctgac caccgtggac agcctgtcga gtgccctctc ccagatgagt 4981 ttcgggggca aggcgacggc gacgggagca ggtgaggatc cgcaggaaat gaaactgggc 5041 ttcacctttg gcgatgatcc cactgctcct ttgaaagtgg tggattcgat tgagaagacg 5101 gccagccaac agcagcaaca gcagcagcaa cactcgcaac agcaacagca gcagcaaaac 5161 aattcgacgg cggatctcaa catgaagata gccagcgtga agaaggtctg ggagtcggcc 5221 acgcccatgt cggagcagca gcagcaacag cagcagcagt cgcaggtgca gcagccgcaa 5281 cagcagcagc aacagcagca gcaacaacag caacagcaac aacagcaggt tgtgggtcag 5341 cagcagcagg cgggcgacga tggcagtggc cacatgagtg ccgcctcctt tgtggccgcc 5401 gtggccgcct cgcagcacca gcagcagcac cagcagatgc cccactacgc ggtgtcggcg 5461 gtgcacatgc agcagagcca ccaccaccag cagcagcagc agcagcaggc ggcggcagcg 5521 gtggcggcag cgcaggcgca gcaccaccag cagcagcagg cgcagcatca ccagcagcac 5581 cacgcactct cctcgccggg accggtgccc ggtaatcatg gccatggcta cggacatgga 5641 tcgccgttcg acgcgggttc gttggagcag cagttccagc aggaggacta ccccagtccc 5701 cagcagcagc agcagcaaca gcaggcgcat cagaaaacga agcagctgca gcaacagcag 5761 catttgggca tgtctccgcc gcccagtcag cagcagcagc agcagcagca acactcgcaa 5821 cagcaacagc aggcgcacca gcaacagcaa ccccaccaac agccctcttt ctaccaggcc 5881 tcaccacagt tcggagtggg cggcattccc acgatcccca gcccgccggc ggtggtgttc 5941 aactcgtcgc agatgccccc gccgccgtcg cagggcggca atctgtacgc tccattccat 6001 tcgctcgatc attcgagccg ttcgcccgcc tactcggcgg cagcggcggc cgcccacagc 6061 ttcccgaatc attatgcggc agcagcggcg gcggcggcag cggcagccgc gggcggcggt 6121 cccttcaacg tgaacgtaaa tgcctacgcc acgcccacac cggacatgta ctccaatctc 6181 tcctcgcagt ttcgcctggg cggcggtccg ggtcccggtc ccgggccctt cgggcagccc 6241 agctcgcagc agttgagcca ggcgagcaac cacgccgccg tggccatcat ctcgtccagc 6301 agcaactcca tgatgtcctc gggagcggcc aagccgccgc ccagccagca gcaaatcggg 6361 gccataggct ccaagtcggc gggtagtgga ggaggaggtc caggtggacc aggaggaccc 6421 ggtcccggtc cctatgccac cacccagcag tacatgaatc tttatgcggg cccaccgccg 6481 ccacagcatc cggggcaggg cggtccgccg cccggagccc atcagctgca gtcgaacagc 6541 tactactcga attcggcgcc cggcggaccg agcggaccgc agttctatgg cggaccgccg 6601 ccgccgccgc agggaaatgg cggggcgcag agctatggcc tgtatggcgg ccatcagggc 6661 ggaccgcccg gatcaaatgg accgccggga ccgccgcagt cgcagcacac aatgggcacc 6721 tttaatacgc agtttatgaa ctcgcagctg ctcacggcag cgagcattaa tcagtaccgc 6781 ggcggaccga cgcccggagc ggcctatctg aagggcagcc aggcgcaggc gcacatgcag 6841 gattcgttct ttgtaagcaa gacaaacaat tcaagaccat gaaagtttga gcaagattcg 6901 gagccagaga gatttattcc cgatttttaa tcatttgttc gcagtgcaga acagaaagcc 6961 attgcaatat tttcgtttct agttgttttt cgagcgaagc aattcaagac cccagttaaa 7021 atacacatgg aatcaagatt aagcaagatt cggagccaga gatttgcaga aaaaactaga 7081 attgtatacg atgtatttac ctttgtgtta tccccaatat gtttcacttt tgtaatggtc 7141 gctttcgaat ttttcattat ggttctattg attttgagca agaccaattg tgcttgaacc 7201 atgtggaaaa taaatactca ataaacgatt gatacattag tatcaagttg ttttcatatt 7261 tcaaatta