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LOCUS XM_070218207 4658 bp mRNA linear INV 09-DEC-2024 homolog scalloped (sd), transcript variant X3, mRNA. ACCESSION XM_070218207 VERSION XM_070218207.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4658 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4658 /gene="sd" /note="TEA domain transcription factor 1 homolog scalloped; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056687" CDS 461..2290 /gene="sd" /codon_start=1 /product="protein scalloped isoform X3" /protein_id="XP_070074308.1" /db_xref="GeneID:108056687" /translation="MVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSFQEALSIYP PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKI KVETNGVSLHLLNEKEQTLQVMSTMTSSQIVSAQAANNLALAASALSAGGGGGVHHAR HLNLNLSLHPPLPPPPLPPPPPHPHRHSSSSSSSAAAAAAAAAAAAAASAALVPRSPS SPQQQHHYHHHHHHSHPNLTHLPHSHMHTHHHQHAAAVAAVYHLQQQQQQQQQQQLQQ QQLQQQQQQQQQQLQQQQQQRANDANGAATTGGDSEATATAPPAPPPPPPPPPLHHPP LYSGQFWQPGLQPSTSQDFYDYSIKPFAQPPYPAGKTSTAVSGDETGIPPSQLPWEGR AIATHKFRLLEFTAFMEIQRDDMYNRHLFVQLGGKPSFSDPLLETVDIRQIFDKFPEK SGGLKDLYEKGPQNAFYLVKCWADLNTDLTTGSETGDFYGVTSQYESNENVVLVCSTI VCSFGKQVVEKVESEYSRLENNRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSVLE NFTILQVMRARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKE" misc_feature 527..730 /gene="sd" /note="TEA domain; Region: TEA; smart00426" /db_xref="CDD:128703" misc_feature 1652..2278 /gene="sd" /note="YAP binding domain; Region: YBD; pfam17725" /db_xref="CDD:435993" polyA_site 4658 /gene="sd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtttgacgtg cgcgtttctc ttaaccagac gcattttagt ttttccttct gcgccgtccg 61 ggattgtttt ttcattttca ttttcacgct gtgtggaaac aagtcgaaac gaaacgcaac 121 caaaaaaaaa aacataacag agcagaacag aaagccaaaa acagaaaaaa caaaaataaa 181 ttacaaaata atttaaaaga aaatgatttg ataggtgtgg tgtggtacaa acagatacag 241 atagatctga tacaacagtg aagtttcgaa tcgaaaggac tattagtgat attcgaagtt 301 tattgatatc ggctttaaag tggcgccctt ttcaaaccat ttagattccc tcgaggaatt 361 caaggagtta tcggttggac ccggcaccat accatcaccg tggactccag tgaatgccgg 421 tcctccaggt gcccttggat cggcagacac aaatggcagc atggtggata gcaaaaacct 481 ggatgttggt gatatgagcg atgacgaaaa ggatttatcc tccgccgatg ccgaaggtgt 541 atggagtccc gatatcgaac agagctttca agaggcttta tctatatatc cgccgtgcgg 601 acgtagaaaa atcatcttat ccgacgaggg taaaatgtat ggtcgcaacg aactgatcgc 661 acgatatata aaactgcgca caggcaagac gagaaccagg aaacaagtca gctcgcacat 721 ccaagtgctg gctagacgga aactccgcga gatccaggcg aaaatcaaag tggaaaccaa 781 tggtgtgtcc ttgcatttat taaacgagaa agagcaaacg ttgcaggtca tgagcacaat 841 gaccagttcg caaatcgtgt ccgcccaagc ggccaacaat ctggcattgg ctgcctcggc 901 actatcggca ggtggtggtg gcggcgtcca ccacgcgagg catctcaacc tcaacctcag 961 tctgcacccc ccactaccac caccaccact accgccacca ccaccccatc cccatagaca 1021 ctcgtcttcg tcgtcgtcgt cggcggcggc agcagctgca gcagcagcag cagcggcggc 1081 ggcctcagcc gcgttggtcc ccaggtcgcc gtcgtctccg caacagcagc accactacca 1141 ccaccaccac caccattccc atcccaattt gacgcaccta ccgcatagtc atatgcatac 1201 acaccatcac caacatgcgg cagccgttgc agcggtctat catctccagc agcaacagca 1261 gcagcagcag cagcagcagc tgcaacagca gcaactgcaa cagcagcaac agcaacagca 1321 gcagcaactg caacagcagc agcaacagcg ggcgaacgat gcgaacggcg ctgcaacaac 1381 tggcggcgat tcggaggcaa cagcgacggc accgcccgct ccgccacccc ctccgccgcc 1441 gccgccgctg caccacccgc cgttgtattc tggccaattc tggcaacctg gactacagcc 1501 aagcacgtcc caagatttct atgattacag catcaagccc ttcgcccagc caccctatcc 1561 cgccggcaaa acgtcgacgg cggtgtccgg ggacgagact ggaattccgc cctcacaatt 1621 gccctgggaa ggtcgagcca ttgccacgca caaattccgc ctactcgagt ttacggcgtt 1681 catggaaatc cagagagatg atatgtataa ccgtcacctt ttcgttcaac tcggcggtaa 1741 gccatccttt tccgatccac tgcttgagac cgttgatata cgacaaatat tcgacaagtt 1801 tccggaaaag tcggggggcc tcaaagatct ctacgaaaag ggtccacaga atgcgtttta 1861 cctagttaaa tgctgggcgg acctgaatac cgacctaacg accggcagcg aaacgggtga 1921 tttctatggc gtaaccagcc aatacgaaag caacgagaat gtcgtgctcg tgtgctccac 1981 gatcgtttgc tcttttggca aacaggtggt ggagaaggtg gaaagcgagt actcgcggct 2041 ggagaacaat cgctatgtgt accgcatcca gcggtctccg atgtgcgagt acatgatcaa 2101 tttcattcag aagctgaaga acctaccgga acgctatatg atgaacagtg tgctggaaaa 2161 ctttacaata ttgcaagtaa tgagagcccg cgaaacgcag gagacactgc tgtgcatagc 2221 ctatgtgttt gaggtagcgg cccagaacag cggtaccacc caccatatat accggttaat 2281 taaggaatag caaaagctgc atggagcaga gcccgacctg tctgcgaatc ccgtcatcaa 2341 cacacaagtt cacaaatata tcagcgacga taatagtatc aatgcgaatg ccaagaattg 2401 cgagggtaag gcgagtcaag acaacaccaa gagtgccaga agcaacatca acagcagcag 2461 caacagcagc aacaacagca gcagcaacaa cagcagcagc aacagcaata ttaagaatag 2521 gaatctatct gctacactta ttaagcaatc acttagctcg ccgaaccaac atcataacga 2581 aatcgatgcc ttgactgcac ttcaagtgga ggaggttata tatacacagt cacaaggaaa 2641 taccagttac cagttggact ccgaatcgag caacaacaat aacgtaccag agccaacaac 2701 actccagcag caacagcaac ataccgccta tgaggatcgt caagtagtcc ttccaccata 2761 cgacctatgc atcggcaaca agcaaccgca accgcaacag gaactggaac tcgaactgga 2821 gcagaagcag ctggagagca ctagctatga gcagttcctc aagctgtccg ctcatgaata 2881 ttcgcaatca gaaccaagaa gctccgcagc tgctctaaat ctcagcagta ttggcgaaaa 2941 ggaatcagca gtgggaggtg aatccaagcc ggaacttgaa gatcacccag aatttcggac 3001 agaggacatc cgaaccactg ccgattgtgg gatcatcagt aacaaaggcc gtgagccgtg 3061 agcgccatat aaaaccagca gcctttaagc aaggttgagg ctaattttaa gggctagaaa 3121 tataaggaac gacaccatca gaactttttg ttttccaccc ccaaacgaaa aacgaaaaaa 3181 aaggagcctc aaaaacgatc gattggtgtg gtgttcagta tcgaaatcag atttttattt 3241 gtgcaaaata aaaagtgtat catattttat gttacaataa ttatttgaaa ggctctttag 3301 ttcagcgtag agtgctttct gtaaaattgt actatacatg cataaaaaaa aatacattta 3361 aatgatctca aagttactta aaacatattt tttgtgtata atttttttta tgaaaacttt 3421 acaaaatcct gaaaatgaaa aaaaaaaatt aaaagaaaag agaagagatg atcgtgcgct 3481 gatttttaaa aaataggata gtaagagtat atattgacta atatgtttga aacaaagaac 3541 gccgcgaaag aaacagatac aatatagttt tccgaattac cattagatat gcatgattat 3601 gtgcaaatag agttaaggta cttttttttt tatataaaag cttttgcata gggctacaaa 3661 atgtatagaa ataatatgtt agttctattt tatttgaagc ttgatctttc atttagcaag 3721 agtgcagtgc agaggaaaga aagggagagc aaaggagcgg aatggaatag aaagggaaag 3781 ataggatagc tggctggagt ggaaaccgat ttggagctag ataaggtaac ttcgagaact 3841 taagatcaaa gtatattaca atttgttaac cgaaatcgaa atcgaaatcc tggcaagagg 3901 cgagacgcga tgaggaggga aaaggatata gaatcgagcg aaagatgttg tgtgttacgc 3961 gatggttttt gtctatccat tcgtattgta gtggcaaaat ggatatgtaa gtaattgaat 4021 taagcatgtg tcgaatgatc caccgttaat taaattatta attactgatt taaattcatt 4081 agtattaaaa atgcccatat tatataatat aacaagtaaa actggtatgt aattagccat 4141 tttctgcatc caccgaagac aagctcgaac tcgaacacat ctaaaatgtc caaattgtaa 4201 gaaattatac atatatgcag aagaagtaac ataaagattt attttccgat ctaaataaaa 4261 aaacaaaaat aaaagtaaaa gtaatgatag agataacgat aacgaaaatg tattctgaat 4321 gtaaaacagc ctaattaaaa ttatcgtaat aataataata taattacaca tatatattta 4381 ccaaataata taacatattt atgctctaaa gtatatacga ctacaacaaa tacgcatttt 4441 ttgttcgtag ataagataag ttaatgtgaa agaaataata tgattgcata ctaaaaagtt 4501 ccacaacaat gacagttgaa ttttatttcg agagctaaga aaaccagcaa caaaaatatt 4561 ttaaagctat agacttaaaa atattattat taaagatcac taatgaatat ggttggcaaa 4621 atataggtgg agagtaaata taataaattc aaatttaa