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LOCUS XM_070218206 5240 bp mRNA linear INV 09-DEC-2024 homolog scalloped (sd), transcript variant X1, mRNA. ACCESSION XM_070218206 VERSION XM_070218206.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5240 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5240 /gene="sd" /note="TEA domain transcription factor 1 homolog scalloped; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056687" CDS 848..2872 /gene="sd" /codon_start=1 /product="protein scalloped isoform X1" /protein_id="XP_070074307.1" /db_xref="GeneID:108056687" /translation="MKNITSSSTCSTGLLQLQNNLSCTELEVAEKAEQQAVGPGTIPS PWTPVNAGPPGALGSADTNGSMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSFQ EALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKL REIQAKIKVETNGVSLHLLNEKEQTLQVMSTMTSSQIVSAQAANNLALAASALSAGGG GGVHHARHLNLNLSLHPPLPPPPLPPPPPHPHRHSSSSSSSAAAAAAAAAAAAAASAA LVPRSPSSPQQQHHYHHHHHHSHPNLTHLPHSHMHTHHHQHAAAVAAVYHLQQQQQQQ QQQQLQQQQLQQQQQQQQQQLQQQQQQRANDANGAATTGGDSEATATAPPAPPPPPPP PPLHHPPLYSGQFWQPGLQPSTSQDFYDYSIKPFAQPPYPAGKTSTAVSGDETGIPPS QLPWEGRAIATHKFRLLEFTAFMEIQRDDMYNRHLFVQLGGKPSFSDPLLETVDIRQI FDKFPEKSGGLKDLYEKGPQNAFYLVKCWADLNTDLTTGSETGDFYGVTSQYESNENV VLVCSTIVCSFGKQVVEKVESEYSRLENNRYVYRIQRSPMCEYMINFIQKLKNLPERY MMNSVLENFTILQVMRARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKE" misc_feature 1109..1312 /gene="sd" /note="TEA domain; Region: TEA; smart00426" /db_xref="CDD:128703" misc_feature 2234..2860 /gene="sd" /note="YAP binding domain; Region: YBD; pfam17725" /db_xref="CDD:435993" polyA_site 5240 /gene="sd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgagagttga ggtttagctg agttgagttg agttggccag gccaagaagc aggcgcaaca 61 accgaacgcg aacgcgagcg cagggaaaca acaagaaaac aacaatccca gtcccaatcc 121 cagcaatacg aatcggacaa cccaacaacc agaccagacc agaccagcta tagtgctata 181 gtgtgttatc gacgctgacg tcggcgtcgt tctttgtatt gattcgaatt tggattcgga 241 ttcagtcgat gagtttctct cgcttctgcg cgttgcgttt ttcgcagtgt ttccgcgatt 301 tttcgttgtc gtcatcgttg tttcgtatcg tttcgtttcg tctcgtctcg tttcgttgtt 361 gtgtgtggtg tgtggtgtat agtgcgccgc ctcctctcat ttcagccccc ttttttcgta 421 cagccgtgag tggctgtaaa agtttccatc ccgtcccaga cgttagctgc tactaagtat 481 aactaagcta tatggtataa taataaaaca gagaaacaaa aaaaccgctc catcgcgtta 541 tcaacggaca tagataataa cacacccaat ataaagtctg aaaaaacagt tactgttaca 601 agcgaataat aataataaga gtgagtagtg agtgccggag tgagtgcctt tgaccagccg 661 agacgacgac ggtacggtac ggttcttgat ggtgacatca gagtctaaat ctagcgcgaa 721 cagattttaa ttccgtgaac tagtagacga cgcacagtca ccgagtaccg agtctacgta 781 cctctcatat cgggcatacc cgtgaaccca accaaccaac ccgtgaaaac gacaagaaac 841 tggctgcatg aaaaacatca ccagctcgag cacttgcagc actgggctgc tgcaattgca 901 gaacaacctg agctgcactg agttggaggt tgcggagaag gcagaacagc aggcagttgg 961 acccggcacc ataccatcac cgtggactcc agtgaatgcc ggtcctccag gtgcccttgg 1021 atcggcagac acaaatggca gcatggtgga tagcaaaaac ctggatgttg gtgatatgag 1081 cgatgacgaa aaggatttat cctccgccga tgccgaaggt gtatggagtc ccgatatcga 1141 acagagcttt caagaggctt tatctatata tccgccgtgc ggacgtagaa aaatcatctt 1201 atccgacgag ggtaaaatgt atggtcgcaa cgaactgatc gcacgatata taaaactgcg 1261 cacaggcaag acgagaacca ggaaacaagt cagctcgcac atccaagtgc tggctagacg 1321 gaaactccgc gagatccagg cgaaaatcaa agtggaaacc aatggtgtgt ccttgcattt 1381 attaaacgag aaagagcaaa cgttgcaggt catgagcaca atgaccagtt cgcaaatcgt 1441 gtccgcccaa gcggccaaca atctggcatt ggctgcctcg gcactatcgg caggtggtgg 1501 tggcggcgtc caccacgcga ggcatctcaa cctcaacctc agtctgcacc ccccactacc 1561 accaccacca ctaccgccac caccacccca tccccataga cactcgtctt cgtcgtcgtc 1621 gtcggcggcg gcagcagctg cagcagcagc agcagcggcg gcggcctcag ccgcgttggt 1681 ccccaggtcg ccgtcgtctc cgcaacagca gcaccactac caccaccacc accaccattc 1741 ccatcccaat ttgacgcacc taccgcatag tcatatgcat acacaccatc accaacatgc 1801 ggcagccgtt gcagcggtct atcatctcca gcagcaacag cagcagcagc agcagcagca 1861 gctgcaacag cagcaactgc aacagcagca acagcaacag cagcagcaac tgcaacagca 1921 gcagcaacag cgggcgaacg atgcgaacgg cgctgcaaca actggcggcg attcggaggc 1981 aacagcgacg gcaccgcccg ctccgccacc ccctccgccg ccgccgccgc tgcaccaccc 2041 gccgttgtat tctggccaat tctggcaacc tggactacag ccaagcacgt cccaagattt 2101 ctatgattac agcatcaagc ccttcgccca gccaccctat cccgccggca aaacgtcgac 2161 ggcggtgtcc ggggacgaga ctggaattcc gccctcacaa ttgccctggg aaggtcgagc 2221 cattgccacg cacaaattcc gcctactcga gtttacggcg ttcatggaaa tccagagaga 2281 tgatatgtat aaccgtcacc ttttcgttca actcggcggt aagccatcct tttccgatcc 2341 actgcttgag accgttgata tacgacaaat attcgacaag tttccggaaa agtcgggggg 2401 cctcaaagat ctctacgaaa agggtccaca gaatgcgttt tacctagtta aatgctgggc 2461 ggacctgaat accgacctaa cgaccggcag cgaaacgggt gatttctatg gcgtaaccag 2521 ccaatacgaa agcaacgaga atgtcgtgct cgtgtgctcc acgatcgttt gctcttttgg 2581 caaacaggtg gtggagaagg tggaaagcga gtactcgcgg ctggagaaca atcgctatgt 2641 gtaccgcatc cagcggtctc cgatgtgcga gtacatgatc aatttcattc agaagctgaa 2701 gaacctaccg gaacgctata tgatgaacag tgtgctggaa aactttacaa tattgcaagt 2761 aatgagagcc cgcgaaacgc aggagacact gctgtgcata gcctatgtgt ttgaggtagc 2821 ggcccagaac agcggtacca cccaccatat ataccggtta attaaggaat agcaaaagct 2881 gcatggagca gagcccgacc tgtctgcgaa tcccgtcatc aacacacaag ttcacaaata 2941 tatcagcgac gataatagta tcaatgcgaa tgccaagaat tgcgagggta aggcgagtca 3001 agacaacacc aagagtgcca gaagcaacat caacagcagc agcaacagca gcaacaacag 3061 cagcagcaac aacagcagca gcaacagcaa tattaagaat aggaatctat ctgctacact 3121 tattaagcaa tcacttagct cgccgaacca acatcataac gaaatcgatg ccttgactgc 3181 acttcaagtg gaggaggtta tatatacaca gtcacaagga aataccagtt accagttgga 3241 ctccgaatcg agcaacaaca ataacgtacc agagccaaca acactccagc agcaacagca 3301 acataccgcc tatgaggatc gtcaagtagt ccttccacca tacgacctat gcatcggcaa 3361 caagcaaccg caaccgcaac aggaactgga actcgaactg gagcagaagc agctggagag 3421 cactagctat gagcagttcc tcaagctgtc cgctcatgaa tattcgcaat cagaaccaag 3481 aagctccgca gctgctctaa atctcagcag tattggcgaa aaggaatcag cagtgggagg 3541 tgaatccaag ccggaacttg aagatcaccc agaatttcgg acagaggaca tccgaaccac 3601 tgccgattgt gggatcatca gtaacaaagg ccgtgagccg tgagcgccat ataaaaccag 3661 cagcctttaa gcaaggttga ggctaatttt aagggctaga aatataagga acgacaccat 3721 cagaactttt tgttttccac ccccaaacga aaaacgaaaa aaaaggagcc tcaaaaacga 3781 tcgattggtg tggtgttcag tatcgaaatc agatttttat ttgtgcaaaa taaaaagtgt 3841 atcatatttt atgttacaat aattatttga aaggctcttt agttcagcgt agagtgcttt 3901 ctgtaaaatt gtactataca tgcataaaaa aaaatacatt taaatgatct caaagttact 3961 taaaacatat tttttgtgta taattttttt tatgaaaact ttacaaaatc ctgaaaatga 4021 aaaaaaaaaa ttaaaagaaa agagaagaga tgatcgtgcg ctgattttta aaaaatagga 4081 tagtaagagt atatattgac taatatgttt gaaacaaaga acgccgcgaa agaaacagat 4141 acaatatagt tttccgaatt accattagat atgcatgatt atgtgcaaat agagttaagg 4201 tacttttttt tttatataaa agcttttgca tagggctaca aaatgtatag aaataatatg 4261 ttagttctat tttatttgaa gcttgatctt tcatttagca agagtgcagt gcagaggaaa 4321 gaaagggaga gcaaaggagc ggaatggaat agaaagggaa agataggata gctggctgga 4381 gtggaaaccg atttggagct agataaggta acttcgagaa cttaagatca aagtatatta 4441 caatttgtta accgaaatcg aaatcgaaat cctggcaaga ggcgagacgc gatgaggagg 4501 gaaaaggata tagaatcgag cgaaagatgt tgtgtgttac gcgatggttt ttgtctatcc 4561 attcgtattg tagtggcaaa atggatatgt aagtaattga attaagcatg tgtcgaatga 4621 tccaccgtta attaaattat taattactga tttaaattca ttagtattaa aaatgcccat 4681 attatataat ataacaagta aaactggtat gtaattagcc attttctgca tccaccgaag 4741 acaagctcga actcgaacac atctaaaatg tccaaattgt aagaaattat acatatatgc 4801 agaagaagta acataaagat ttattttccg atctaaataa aaaaacaaaa ataaaagtaa 4861 aagtaatgat agagataacg ataacgaaaa tgtattctga atgtaaaaca gcctaattaa 4921 aattatcgta ataataataa tataattaca catatatatt taccaaataa tataacatat 4981 ttatgctcta aagtatatac gactacaaca aatacgcatt ttttgttcgt agataagata 5041 agttaatgtg aaagaaataa tatgattgca tactaaaaag ttccacaaca atgacagttg 5101 aattttattt cgagagctaa gaaaaccagc aacaaaaata ttttaaagct atagacttaa 5161 aaatattatt attaaagatc actaatgaat atggttggca aaatataggt ggagagtaaa 5221 tataataaat tcaaatttaa