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LOCUS XM_070218200 3974 bp mRNA linear INV 09-DEC-2024 phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 (LOC108058426), transcript variant X4, mRNA. ACCESSION XM_070218200 VERSION XM_070218200.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3974 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3974 /gene="LOC108058426" /note="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108058426" CDS 32..3643 /gene="LOC108058426" /codon_start=1 /product="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 isoform X2" /protein_id="XP_070074301.1" /db_xref="GeneID:108058426" /translation="MSDGSPPPSICFIRAAESYPKSQMEKEDSQLFVPFQELAGESIK YLGRTDDGVLALSNYRIFLSKKSTAYETYVPLGLIESVQVRDLFQLIVNCKDASTVRC SFQSAEQCADWQRRIHLLIGVPEALETLFAFPFYSWTCDVIGTGNGSAQANGNGLVAK DRSLTLQNGSAKPTVANPLAPVDPASDSNRLQRSVRYESDFKSEVARLGFDLKGSWRI STANADFKLCPSYPPKLLVPCCITDEMLHNVANFRGSRRLPAVVWRHQKSGAILARCS QPEVGWLGWRNTRDEQLLKALADACAFDRGEHARHSTIAAETKATQPTKGSSSKETNG QAAGLSGKSSPSLDDSSHEELTLDEIKKILIVDARSYTSAVTNRARGGGCECIEYYPC AEIEFMNLGNIHAIRKSFHAVRQLCASSPDDPNWFGQLEKTMWMQHLSGLLGATMTVV HTIEKNGRPVLVHCSDGWDRTPQIVATAQLCLDPYYRTVEGFRVLVEREWLNFGHKFA DRSGNGPNSDEVNERCPVFLQWLDLVHQIHRQYPCSFEFSISYLIKLAQHSLSCLFGT FLCNSLRERIENSVFDRTFSVWPFLAETMYRNPLYKHETEKVLWPAHSVRFLYFWSDV YLGSLGNKNGTDLPLLSNERQTGHNNGLMAKTRSSEDLTTNELGQSTISRRSSDPNLT VESIVTDCFNANSNSMFDIRTESENVQESAKDPKEFELDVTDATEVVLGPSSRSNNPI PEFHGDQSTAAANRDILQVESQSQRPSSLVSSTGRAVLAHSENDQNPVPLKSEDTSDI CRTLWGNGAIETSTDTLIPAEPVQKTNSSDKTDSSSSSRDRDRVRDRTPPIELAIGDK TAPAAPQSNKISHSYNNLPKVHMKPNAVICPQRGDAFPHHLDLQVPRESAANATSCKL EKLSNANANANGSECYHHHADEGLFISPDLQRFVGQSPFDAPAAQGGRIRRNTFGSSY SRDLKFTTENGSAHQFPSSGIISLPPTPFQERAQFTISCPDGLAHGLSEQNIRLHQIV QEHKLREEMLLREIHGMRLALLEKGCPSCNSIVSTNMEHENGSDIVENASTCSWEAVE ERSGPPSFAHPSSIQEKKASSVLWVPDHAVSRCSSCQTEFWLGRRKHHCRSCGEIFCA DCSEFWAPLPNEKLFNPVRLCGSCYTTVTTNVQEYAAVPPESQSQVKDEETSSSANS" misc_feature 107..445 /gene="LOC108058426" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 629..1756 /gene="LOC108058426" /note="Myotubularin-like phosphatase domain; Region: Myotub-related; pfam06602" /db_xref="CDD:461958" misc_feature 3365..3544 /gene="LOC108058426" /note="FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins; Region: FYVE_MTMR4; cd15733" /db_xref="CDD:277272" misc_feature order(3365..3367,3374..3376,3428..3445,3449..3454, 3524..3532) /gene="LOC108058426" /note="putative phosphatidylinositol 3-phosphate binding site [chemical binding]; other site" /db_xref="CDD:277272" polyA_site 3974 /gene="LOC108058426" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggaatctgt tgagtttgac cgattcacac aatgtccgat ggatcaccgc ctccatcgat 61 ctgctttatc cgcgccgccg aatcgtatcc aaaatcacaa atggagaagg aagactctca 121 gctgtttgtg cccttccaag agttggccgg cgaatcgatc aagtacctgg gccgcaccga 181 cgacggcgtc ctcgccctgt cgaactaccg gatatttctc tccaagaagt caaccgccta 241 cgagacctac gtgccgctgg gcctaatcga gtccgtgcag gtgcgcgatc tgttccagct 301 gatcgttaac tgcaaggacg ccagcacggt gcggtgctcg tttcagtcgg cggaacagtg 361 tgccgactgg cagcgccgga tccacctgct catcggggtt cccgaggcgc tggagacact 421 ctttgccttt cccttctatt cctggacctg cgatgtgatt gggaccggaa acggaagcgc 481 ccaggccaac ggcaacgggc tggtggccaa ggatcgctcc ctaacgctac aaaatggctc 541 ggcgaagcct acagtggcca atcccctggc ccctgttgat cctgccagcg attcgaaccg 601 cctgcagcga tccgttcgct atgagagcga cttcaagagc gaggtggccc gcctcgggtt 661 cgatctgaag ggctcgtggc gcatctccac ggccaatgca gacttcaagc tctgcccctc 721 gtatccaccc aaattgctgg tgccctgctg catcaccgac gagatgctcc acaacgtggc 781 caacttccgg ggatcgcgaa ggctgccagc ggtcgtctgg cggcatcaga agtcgggtgc 841 cattctggct cgctgcagcc agccggaggt cggttggctc ggctggcgga acacaaggga 901 cgagcagctg ctgaaggcac tggccgatgc ctgtgccttc gacaggggag agcatgccag 961 gcattccacc attgccgctg agacaaaggc gacgcaacca acaaagggat cctcttccaa 1021 ggagaccaac ggccaggcgg caggcttgtc cggcaagagt tcaccgtctc tggacgattc 1081 ctcgcacgag gaacttacgc tcgatgaaat aaagaaaatt ctcattgtgg acgctcgtag 1141 ctatacatcc gccgttacaa atcgcgccag aggtggcggc tgtgagtgca tcgagtacta 1201 tccttgtgcg gaaattgagt ttatgaacct gggcaatatc cacgccatcc gaaagagttt 1261 ccacgccgtc cggcagctgt gcgcctcatc gcccgacgat ccaaattggt tcggacaact 1321 ggagaagacg atgtggatgc agcatctttc gggtctgctg ggtgccacca tgaccgttgt 1381 gcacactatc gagaagaatg gacggcccgt actagtgcac tgctcagatg gctgggatcg 1441 cactccccag atcgtggcta cggcgcagct ctgcttggat ccgtactaca ggactgtgga 1501 gggctttcgc gtgcttgtgg agcgcgaatg gctgaacttc ggccacaaat tcgccgatcg 1561 cagcggcaat ggtcccaact ccgacgaggt caacgagcga tgcccggttt tcctgcagtg 1621 gctcgatctg gtgcatcaaa tacacagaca gtatccatgc agttttgagt tcagcataag 1681 ctatttgatc aaactggcgc aacattcgct gtcctgtcta ttcggcacgt tcctatgtaa 1741 ctcgctcaga gaacgcatcg agaattcagt tttcgaccga acgttttcgg tgtggccatt 1801 tttagcggaa actatgtata gaaatcctct ctataagcat gagactgaaa aggttctttg 1861 gccggcgcac agtgtgcggt ttttatactt ttggtcggac gtttaccttg gtagtttagg 1921 caacaaaaac ggcactgatc tgccattact gagtaatgaa cgacagactg gacacaataa 1981 tggcctaatg gcgaagacaa gatcttcgga agacttaaca acgaacgagt tgggacagag 2041 caccatttcg aggagatcga gtgatccgaa ccttacagtt gaatccattg ttacagattg 2101 cttcaatgcg aacagcaact ccatgttcga catacgaacc gagagcgaaa atgtccagga 2161 aagcgcgaaa gaccccaaag aatttgagct ggacgtgacg gatgcaactg aagtggttct 2221 gggtcccagt agccgttcaa ataatcccat tcccgagttc catggcgacc aaagtacagc 2281 agctgctaac cgtgatatat tgcaagtgga atcacaatcg caaaggccaa gttccttggt 2341 ctcctcaacc gggcgagctg ttttggctca ctctgaaaac gatcaaaatc cagttccttt 2401 aaaatctgaa gacacaagtg atatttgtcg cactctgtgg gggaatggcg ccatcgaaac 2461 cagcactgat accctgattc ctgcggagcc cgtacaaaag acgaacagca gcgacaagac 2521 cgacagcagc agcagcagta gagatcgaga tcgagttcga gatcgaacgc cgccgatcga 2581 actggcgatt ggtgataaaa ctgctcccgc tgctccccaa agcaataaaa tcagtcatag 2641 ctacaataat ttgcccaagg ttcacatgaa accgaatgcc gtgatatgcc cgcagcgagg 2701 ggacgccttt ccgcatcacc tggacctaca agtgccaagg gagagtgcgg caaacgcaac 2761 gagctgcaag ctggagaagt tgtcgaatgc gaatgcgaat gccaatggat ccgaatgtta 2821 ccaccaccat gctgatgaag gtctatttat atctcccgat ctccagcgat tcgtgggtca 2881 gtcgccattc gatgcgcccg cggcgcaggg cggtcgaata cgccgaaata cctttggctc 2941 cagctacagt cgcgacttga agtttacaac agagaacggc agcgcacacc aatttccttc 3001 gtcggggatc atttcgctgc cacccacacc gtttcaggag agggcgcagt tcactatatc 3061 ctgccccgat ggcctggctc acggactcag cgaacaaaac ataagactcc accagatcgt 3121 acaagaacac aagctacgag aggaaatgct tctgcgggaa attcacggca tgcgattggc 3181 actgttggaa aagggctgcc ccagctgcaa tagcatcgtt tcgacaaata tggaacatga 3241 aaatggatcg gatatcgttg aaaatgcttc aacatgttcc tgggaagccg tcgaagagcg 3301 tagcggtccc ccatcgtttg cccacccttc ctcgatccaa gagaaaaaag cctccagtgt 3361 cctctgggta ccagatcatg ccgtttcgcg ttgctctagt tgtcaaactg agttctggct 3421 gggacgaaga aaacatcatt gtcgatcatg tggagaaatt ttttgtgctg actgctcgga 3481 attttgggcg cctttgccaa acgaaaagct ttttaatcca gttaggctat gtggatcttg 3541 ctacacgacc gtcacaacaa atgtccaaga gtacgctgcc gtacctccag aatcccaatc 3601 ccaggtgaag gacgaagaga cgtcgtcttc tgcaaattcc taagagcttt tccccaatta 3661 ttttaagact cctctgttgt atcaatatgt acatattatt actcaaaata tttattgcat 3721 atgtgttagc accataatag cgaaaaattc atctgtgcgt ttatatagaa cacgaaatta 3781 tacaattttg ttagaaatat atatgtggat atatggaaac aattgtaaat tcaaatacaa 3841 tctttaaacg aaacgtttta gttttggtag ttaaattaaa agaaggagat cgatggtgac 3901 aaaaagtttt cagtggagaa aaacacaatg atgtaagcag tgtaaaaaga atataaacat 3961 atggatgtga caat