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LOCUS XM_070218197 3966 bp mRNA linear INV 09-DEC-2024 transcript variant X5, mRNA. ACCESSION XM_070218197 VERSION XM_070218197.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3966 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3966 /gene="HDAC6" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060320" CDS 253..3591 /gene="HDAC6" /codon_start=1 /product="histone deacetylase 6 isoform X5" /protein_id="XP_070074298.1" /db_xref="GeneID:108060320" /translation="MASKSKGAAGATAATAAGVIGGGGGSSAGGGSGGISAADPRKAN KPSAALLEAKRRARNMLKNQSNVMQECVTDIFQNAVDCKGAVRKPTALIYDESMSQHC CLWDKEHYECPERFTRVLERCRELNLAERCLELPSRSATKEEILRLHTEEHFERLKQT SGIRDDERMEDLSSRYDSIYIHPSTFELSLLATGSTIELVDHLIAGKAQNGMAIIRPP GHHAMKAEFNGYCFFNNVALAAQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDPRVV YFSIHRFEHGSFWPHLQESDYHAIGSGAGRGYNFNVPLNAIGMTNGDYLAIFQQLLLP VALEFQPELIIVSAGYDAALGCPEGEMEVTPACYPHLLNPLLRLADSRVAVVLEGGYC LDSLAEGAALTLRSLLGDPCPRLVEVLPLPRPELTQALLSCIAVHRTHWRCLQLQRTY DSKELLDQEKAQTDLHKLLRLWIGGPPPVDRYPTRDTAIPLPPEKLARNAARLQVLRT ETKLSLPAVRVCYSYDAQMLLHCNLDDPGHPEQPSRVQHIHKMHEEYGLLARMKQLAP RAATTDEVCLAHTRSHVNSVRRLMGRDPEELHRVAAGYNSVYLHPRTFDCATLAAGAV LQAVDSVLRGESRHGICNVRPPGHHAEQDQPHGFCIFNNVAIAAQYAIRDFGLERVLI VDWDVHHGNGTQHIFEANPKVLYISLHRYEHGAFFPKGPDGNYDVVGKGAGRGFNVNI PWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGFDAAIGDPLGGCKVTPEGYGL LTHWLSALAGGRIVVCLEGGYNVNSISYAMTMCTKTLLGDPVPTPQLGAVALQKPPTV AHQSCVESLQSCLEIQRSHWRSLEFVGRRLPAGDCVGENNNEDFLTASLRQLNISNDD APGAAGGAAGDRNACGDERPSGSKPKVKVKTLTEYLAENKEALEQNEMFAVYPLKTCP HLSLLRPEEAPQSAIDSGAACSVCGSTGENWVCLGCRLVGCGRYMGGHMELHSAEAQH PLAMSQADLSVWCYACSSYVDHPRLYAYLNPLHVDKFQEPMAWTHGCPRREDGCYPLG ADGRDDDEDLAGSSGLCLRLERNN" misc_feature 559..1575 /gene="HDAC6" /note="Histone deacetylase 6, domain 1 and histone deacetylase 10; Region: HDAC10_HDAC6-dom1; cd10002" /db_xref="CDD:212526" misc_feature order(910..915,937..942,1024..1026,1030..1032,1303..1305, 1417..1419) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212526" misc_feature 1819..2892 /gene="HDAC6" /note="Histone deacetylase 6, domain 2; Region: HDAC6-dom2; cd10003" /db_xref="CDD:212527" misc_feature order(2194..2199,2221..2226,2308..2310,2314..2316, 2587..2589,2701..2703) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212527" misc_feature 3229..3417 /gene="HDAC6" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" polyA_site 3966 /gene="HDAC6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aagcacctaa atattcgtat tagctgtagc attcgatacg attttagtaa atttttaatg 61 tagtgataat tgtcgatagt ctttgtatag ttcatataaa taatttgtag tttttcggga 121 agagttagtg gatagtggat acggtgtact tgtcacgcct gagtggatat ccaaattgga 181 gactggatac catccagccc gcccatcgtc acgcgacgga gcgcgcagca ggccaagatt 241 cagacgcggg caatggccag taagtcgaag ggagcggcgg gagcgacggc ggcgacggcg 301 gccggggtga tcggcggcgg cggcggctcc tctgccggcg gcggcagcgg cggtatcagt 361 gccgccgatc cgcgaaaggc gaacaaaccg agcgcagcgc tcttggaggc gaaacgtcga 421 gcgcggaaca tgctcaagaa ccagagcaac gtcatgcagg agtgcgtcac ggatatattc 481 cagaatgctg tcgattgcaa gggcgctgtg cgaaagccca cggccctcat ctacgacgag 541 tcgatgagcc agcactgctg tttgtgggac aaggagcact acgagtgccc cgagcgcttc 601 acacgcgtcc tggagcgctg ccgcgaactg aatctggcgg agcgctgctt ggagttgccc 661 tcgcgatcgg ccaccaagga ggagattctg cggctgcaca cggaggagca ctttgagcgc 721 ctgaagcaga cctcggggat tcgtgatgac gagcgcatgg aggacctgag ctcccgctac 781 gattcaatct acattcatcc gtccacattc gagctttccc tgctggccac cggatccacc 841 atcgagttgg tggaccatct gatcgctgga aaggcccaga atggcatggc catcatccgg 901 ccgccgggtc atcatgccat gaaggccgag ttcaatggct attgcttctt caacaacgtg 961 gccctggccg cccagcacgc cctggatgtc cacaagctgc agcgcatcct gatcatcgac 1021 tacgacgtcc atcatggaca gggaacgcag aggttcttct acaacgatcc cagggtggtc 1081 tacttctcga tccatcgctt cgagcacggc agcttctggc cgcacctgca ggagtcggat 1141 taccatgcca tcggatcggg agcgggcagg ggctacaact tcaatgtgcc cctgaatgcg 1201 attgggatga cgaacggcga ttacctggcc attttccagc agctcctgct gccggtggcc 1261 ctggagtttc agccggagct gattatcgtt tcggctggct acgatgcggc cctcggttgt 1321 ccggagggcg aaatggaggt gacgccggcc tgctatccgc atctgctcaa tcccctcctg 1381 cgactcgccg actcgcgggt ggccgtcgtc ctggagggcg gctattgcct ggactcgctg 1441 gccgagggtg ccgctttgac cctgcgctcc ctgctcggcg atccctgccc ccgactggtg 1501 gaggtactgc ctctgccgcg tcccgaactc acgcaggcgc tgctcagctg cattgccgtc 1561 catcggacgc actggcgctg cctgcagctg cagcgaacct atgattcgaa ggagttgctc 1621 gaccaggaga aggctcaaac ggacctacac aagctgctgc gcctttggat aggcggacca 1681 ccgccagtgg atcgttatcc caccagggat actgctattc ctctgccccc cgagaagctg 1741 gccaggaatg cggcccgtct gcaggtcctc cgcaccgaaa caaagctatc gttgcccgcg 1801 gtgagagtct gctactcgta cgacgcccag atgctgctcc actgcaatct cgacgatccc 1861 ggccatccgg agcagccatc gcgcgtccag cacatccaca agatgcacga ggagtacggc 1921 ctgctggcca ggatgaagca gctagcgccg agggcggcca ccaccgatga agtttgcctg 1981 gcccacacgc gatcgcatgt gaattcggtg cgtcgactga tgggacgcga cccggaggaa 2041 ctgcatcgcg tggcggcggg ctacaattcg gtgtatctgc atccgcgcac cttcgattgc 2101 gccaccttgg ccgccggcgc cgtgctccag gcggtggaca gtgtgctgcg cggcgagtcg 2161 cggcacggca tctgcaacgt tcgtccgccg ggccatcatg ccgagcagga tcagccgcat 2221 ggcttctgta tcttcaacaa tgtggccatt gcggcgcagt atgctatcag ggattttggt 2281 ttggaacgtg tgcttattgt cgattgggat gtgcatcacg gcaacgggac gcagcacatc 2341 ttcgaggcga atcccaaggt gctttacata agccttcatc gctacgagca tggagccttc 2401 tttcccaagg gacccgacgg caactacgat gtggtgggca agggagccgg acggggattc 2461 aatgtgaata taccctggaa taagaagggc atgggtgatt tggagtacgc tctggccttc 2521 cagcaactga tcatgcccat tgcctacgag ttcaacccgc aactggtcct ggtctccgcg 2581 ggcttcgatg cggccatcgg cgatccgctg ggcggctgca aggtgacgcc cgagggctac 2641 ggcctgctca cccattggct ctctgcgctg gccggcggca ggattgtcgt ctgcctggag 2701 ggtggctaca atgtaaactc catttcgtat gccatgacca tgtgcaccaa gacgctactg 2761 ggcgatccgg tgccgacgcc ccagctgggt gcagtggctc tgcagaagcc gccgacggtg 2821 gcccatcaga gctgcgtgga atcgctgcag tcgtgcctgg agattcaacg cagccactgg 2881 cggagcttgg agtttgtggg ccgacggttg ccggccggcg attgtgtggg cgagaataac 2941 aacgaggatt ttcttaccgc ctccttgcga cagttgaata tctcaaatga cgacgcaccg 3001 ggggcggcgg gcggcgcggc cggcgatcgg aacgcttgcg gcgatgagcg gcccagcggc 3061 agcaagccca aagtcaaggt aaaaacgctc accgagtatt tggccgagaa caaggaggcc 3121 ctcgagcaga atgagatgtt cgccgtgtat ccgctcaaga cgtgcccgca tttgagtctc 3181 ctgcgaccgg aggaggcgcc gcaatcagca atagacagcg gggcggcgtg cagcgtttgc 3241 ggatcgacgg gggagaactg ggtgtgtctg ggctgccggc tggtgggctg cggtcgctac 3301 atgggcggcc acatggagct gcactcggcg gaggcacagc atccgctggc gatgagccag 3361 gcggacctct cggtgtggtg ctatgcgtgc tcctcgtacg tggatcatcc ccgcctgtat 3421 gcctatctca atccgctgca tgtggacaag ttccaggagc cgatggcctg gacacatggc 3481 tgtccgcggc gtgaggatgg ctgctatccc ttgggagccg acggtcggga tgatgatgag 3541 gatttggccg ggagcagcgg cctctgcctg cggctggagc gcaacaactg acccttggcc 3601 atccgcgtgc tggacgccct cacggactac atgtgcacgc tctgcccgcc gctcagacac 3661 ctcatccagt tcctggccga gcacctctgg ccgctgctgg agcgcattta cctaaacctc 3721 ctgcactact tcctggccca ttgagccagt gaatccttct cccgcatccc agatcctcct 3781 gcataccagt tgccctaaac taaatataaa caaacaaaag atgaaggaaa ttattgttaa 3841 ttcgggaggt gccacttggc caggcggctg cctccccaaa tttatacaaa taaaaattgt 3901 taatgttatc aactaatgat ttaataaaga cttcgagtgt ttttcgagtg tattttagcc 3961 gacaaa