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LOCUS XM_070218164 5982 bp mRNA linear INV 09-DEC-2024 X3, mRNA. ACCESSION XM_070218164 VERSION XM_070218164.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5982 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5982 /gene="pico" /note="pico; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070183" CDS 622..3675 /gene="pico" /codon_start=1 /product="abnormal cell migration protein 10 isoform X3" /protein_id="XP_070074265.1" /db_xref="GeneID:108070183" /translation="MANLEDSQESELDQILGELSLLEAQISYGEASLLPATINAAPLG GTMQPPPPGAVASSLVSMSAASSRSHSRTNSSISADVSSCSSSGISENGHGMGLGIGL PGGPVIVHPPPPLGMTMGITMGVVTPREPRTESPDNDSAFSDTVSLLSSESSASSNTS LQQQQQQQQLQQQQLQQQQQQLQQKQKQQLANSGEKQQSISKAAKIQLALHKLESASI RRLFVKAFTSDGASKSLLVDERMVCGHVTRLLADKNHVLMQSNWALVEHLGDLQMERL FEDHELLVDNLMTWNSDAGNRVLFQQRPDKVALFLRPELYLPGPQMAPGCQHDEQTRQ MLLDEFFDSHNQLQLDGPLYMKADPKKGWKRYHFVLRSSGLYYFPKEKTKNTRDLACL NLFHGHNVYTGLGWRKKWKSPTDYTFGFKAVADSSLGKTCRSLKMLCAEDLPTLDRWL TAIRVCKYGKQLWDSRKSLMEDLCLGRDADAVSQSSFAVSMRSESISSISSAVPSQCG SVSSAISSMSHSTSGRTSRASSSSSSGCLSDDNNGFDSEFTTGTIKRKPSMKPNLPLT TMTRQLKEVGEITICESGGGGDASSPERSGTLTRRHSRRKSQESNGSGTLKRRPMPVV SSTAAAAAAAVKQAEPMGSASSTSSSSNSTPTPTPSICAKPPPGDAAASLMCSSTLSL DSLPPPPPEEDQDVYGSQLSLASLPPPPPPEEVLAMSYAGPPSPATPTPMSTMIMPNS NGSLPPAVPAKPIKPAVKQATGALKAAPPYKAPPDYVGPAAAGPPLPPPPAPPAQKKV SFADSPVLLRRKMCSPEPVLPQRSPSTTLSCSSTGSAAAAYQTYAPGPMLPPRSDLAR LSSQSNGSGISSEITSPKRLQESASNPPRDFLKDLQRVMRKKWQVAQKCKAEPATTPH EVLGFRDFSNEDLLAAHNLNSGANSSHYYRETANVSHWVQEHYEYAHNALYENVHGQA RTGVAGGDAGTPPLPPPPGNSVAAKKRPPPPPPKRSDKTHLTNRV" misc_feature 1276..1533 /gene="pico" /note="Ras-associating (RA) domain found in Caenorhabditis elegans abnormal cell migration protein 10 (MIG-10) and similar proteins; Region: RA_MRL_MIG10; cd16138" /db_xref="CDD:340555" misc_feature order(1291..1293,1306..1329,1375..1386,1429..1431, 1483..1488,1495..1497) /gene="pico" /note="RA-PH-RAP1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340555" misc_feature 1645..2016 /gene="pico" /note="Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain; Region: PH_APBB1IP; cd01259" /db_xref="CDD:269961" polyA_site 5982 /gene="pico" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gagattcgac cgacgcgcgc aggagacgtg acatcgcaga gcggagcgga aagaaaaggc 61 tggaaaggcg aacgaagcga acgaacacga acaacaacaa ctaaactgaa caaacggaac 121 ggcggatgcg agtgcgagag tgattggaaa aaagagcgcg cgcggaattc gaagtgcaca 181 attattcaat tttattttta ttttttgtga ctctgcgttc cgtttcggtc caaatacgtc 241 gccttttttc gtcagttctt ttttttcttg ttgcctgcgc ttattaagtt cctttaaagt 301 gccccgatcc attgtgttgt gattgccgcc tttatataca caaaaacaaa catcggaatc 361 gaaatcggaa ggaggcgagg aagcagcaca ttgcgcggga tcaacctaag gggcatcttg 421 gtggacggcg ctgccagcgg cggaggagca ggcggaacag gagcagtggc tggtggtgcg 481 acgaccgccg ctggcttcgt ggctggtggg gattgccctg gaattggcgc cgcagctggc 541 gctggcgtca agctgcgcag gcacagcgat cgtcccctga cgccggagtc caagcagctc 601 tcccacacat accgcatctc catggccaat ctggaggact cgcaggagtc ggagctggac 661 cagatcctcg gcgagctgag cctgctggag gcgcagatca gctacggcga ggcctccctg 721 ctgcccgcga ccattaatgc tgctccactg ggaggaacaa tgcagccacc accgcccgga 781 gcggtggctt cgtcattggt ttccatgtcg gccgcctcgt cgcgctccca ttcgcggacc 841 aacagcagca tctcggcgga cgtgagcagc tgctcgtcgt cggggatctc ggagaatggt 901 catgggatgg gtctgggaat tggactgcca ggcggaccag tgattgtcca tccaccgcct 961 ccgctcggca tgaccatggg cataacgatg ggcgttgtga cgccccgtga accgcgcacc 1021 gagtcgcccg ataatgattc ggcctttagc gataccgtat ccctcttgtc cagcgaatcg 1081 tcggcctcct cgaacacatc cctgcagcaa caacagcaac agcagcaact gcagcagcag 1141 cagctgcaac agcaacagca gcagcttcag cagaagcaga agcaacagct ggccaacagc 1201 ggcgagaagc agcagagtat ctcgaaggcg gccaagatcc agttggcttt gcacaagctg 1261 gagagcgcct ccatccggcg gctgttcgtc aaggccttca cctcggacgg cgcctccaag 1321 tcgctgctgg tggacgagcg catggtctgc ggtcatgtga cgcggctgct ggccgacaag 1381 aatcacgtgc ttatgcagtc caactgggcg ctggtggagc acctgggcga tcttcagatg 1441 gaacgcctct tcgaggacca cgagctgctg gtggacaacc taatgacctg gaactcggac 1501 gccggcaatc gcgtgctctt ccagcagcga cccgacaagg tggctctgtt tttgcgcccc 1561 gaactctatc tgccgggacc ccagatggcg cccggttgcc agcatgacga gcagacgcgg 1621 cagatgctgc tcgacgagtt cttcgactcg cacaatcagc tgcagttgga cggaccgctc 1681 tacatgaagg ccgatcccaa gaagggctgg aagcggtatc actttgtgtt gcgctcctcg 1741 ggtctctact actttcccaa ggagaagacc aagaacaccc gtgacctggc ctgcctgaat 1801 ctctttcacg gccacaacgt gtacaccggt ttggggtggc gcaagaagtg gaagtcgccg 1861 accgactaca cctttggctt caaggcggtg gccgattcct cgctgggcaa gacgtgccgc 1921 tccctcaaga tgctctgcgc cgaggatctg cccacgctcg accgctggct gacggccatt 1981 cgggtgtgca agtacggcaa gcagctgtgg gacagccgca agtcgctaat ggaggatctc 2041 tgcttgggcc gcgatgccga tgccgtttcg cagtcgagct tcgccgtctc catgcgcagc 2101 gagtcgatct cgagcatctc gtcggcggtg ccctcgcaat gcggcagcgt ttcctcggcc 2161 atcagcagca tgtcccattc gaccagcggc cgcacgtcgc gcgcctcgag cagcagctcc 2221 agcggctgcc tgtcggacga caacaacggc ttcgactcgg aattcaccac gggcaccatt 2281 aagcgcaagc cctcgatgaa gcccaacctg ccgctcacga cgatgacgcg ccagctgaag 2341 gaggtgggcg agattacgat ctgtgagagc ggcggcggcg gcgatgccag ttcccccgag 2401 agaagcggta cgctgacgcg acgccacagc cgccgcaagt cgcaggagag caacggcagt 2461 ggaacgctca agcggcgacc catgccggtg gttagcagca ctgcggcggc ggcggcggcg 2521 gcggtcaagc aggcggagcc catgggcagt gcctcctcca cgtcgtccag cagcaattcc 2581 acgcccacgc ccacgccgag catctgcgcc aagccgccgc cgggcgatgc agccgcctcg 2641 ctgatgtgct catccacgct ctccttggac tcgctgcccc cgccgccgcc ggaggaggat 2701 caggatgtgt acggttcgca gctgtcgctg gcttccctgc cgccgccacc gccgcccgag 2761 gaggtgctgg ccatgagcta tgcagggccg cccagtccag ccactcccac accaatgagc 2821 acaatgatca tgccgaacag caatggatcg ctgccgccgg cagtgccggc caagccgatc 2881 aagccggcgg ttaagcaagc gactggcgct ctgaaggcag cgccaccata caaagcgccg 2941 ccggattatg tgggtcccgc cgccgccgga ccgccgctgc cgccgccgcc ggcgcctccc 3001 gcccagaaga aggtctcgtt tgcggactcg ccggtgctgc tgcgccgcaa gatgtgctca 3061 ccggagccgg tgctgccgca gcgatcgccc agcaccacgc tgagctgcag ctcgacggga 3121 tcagcggccg ccgcctatca gacctacgct ccgggaccga tgctgccgcc gcgatcggat 3181 ctggcgcgtc tgtccagcca gagcaacggg agcgggatta gtagcgagat cacctcgccc 3241 aagcgcctgc aggagtccgc ctcgaatccg ccccgcgact tcctcaagga tctgcagcgt 3301 gtgatgcgca agaagtggca ggtggcgcag aagtgcaagg cggagccggc caccacgccc 3361 cacgaggtgc tgggcttccg ggactttagc aacgaggatc tgctggccgc ccacaaccta 3421 aattcggggg ccaactcctc gcactactac cgcgaaacgg ccaacgtgag ccactgggtg 3481 caggagcact acgagtatgc gcataacgcg ctctacgaga acgtccacgg ccaggcgagg 3541 acgggggtag ctggcggaga tgcgggcaca ccgccgctgc cgccgccgcc cggcaactcg 3601 gtggcggcca agaagcgtcc gccgccgccg ccgccgaaga ggagcgacaa gacgcacctg 3661 accaaccggg tgtaggatct aactgaagaa gagtgcaatc cgcacaatct tcagtctcca 3721 gaggagggaa tttcgtgccg gagcgcaaat atttacttgt ctacgagaaa gcaaagaaaa 3781 tgaatcttac aaattcctat ttaagtctag gcgacaacta agcgagatgg aagaaaaagc 3841 actaattgaa tcatacatac atgtatgact atatatattt tctaagaata tgctatggcc 3901 acgcccactt ctcttacaaa agtattacgc ataacagaga atcaaactgt agaaactcct 3961 tttttaagtt cagtgtcaaa ccgcgtcaaa agggtcaaca aatttgtggc catctactca 4021 aggttttaga taatattttt gagcttttcg ctaaatgcaa aatgggtttt tctttattcg 4081 ttttttaaat ttaagaatat taaaagagcg cagtaaaaat atagtatttt tgttgaccct 4141 tttgactctg tttgattatt caaccatatt tctgattaat ttcgtaaatc gaaaactcag 4201 aaaaagaaaa ggagctctgc actagtaaaa atatttaaga taaattttag tttgtaaaaa 4261 gaagagaaaa attaattttt aaaacgatag tgcattattt aaaaaacact aaattagcgt 4321 tagataagtg tacaatgttt ttatatatac atgcactttt taattgttca gttgctctta 4381 gtattgatat tttatatttt tttttcgata atctttgtaa cggtagagtg aacgttttgt 4441 aagcgcatga aatgcgctgc gctagcaaag gaaatgcctt ataaagcata taaacctaaa 4501 tagggaaagc cctgcatata cacctaatat atatattaat gcatatatat atgtgtatgt 4561 atgtgtgttg atctatccaa attatttgct gtttaaagcg atactattct ttttacccac 4621 aaattttaat tccacattga ttgttcagtt gaaataacaa agtgcttagt tttcaaaaga 4681 tttgtcaagt tcctcaaata gtgttacaat tatcattctc tttgtactta taccgaaccg 4741 cagataagac agacagatca gccataaaat gcaatttgta tgtgcaaatc aaactatttc 4801 aattgaaggc aataagagaa aatggaatta tttctgtaca caaatcaaat atgtaattgt 4861 aattgtaata atatataaat taatattttc ctaaatttcg tttacaaatt ttgtttccca 4921 acatatcatt tcttaagcgt tcctataggt tcaattttta tgtgcatgca ggcattgaat 4981 acgttcaata aagcttaatt ctttggggat tcttttccca aaagaaatta tgcgtagaat 5041 agctttcgat tcgctacgac taaatatata ttgcattctt taaatggacg atttaatatc 5101 attgatcgat taagtatttg atcatttttg taattgtttt cgtgtagtaa cttgtttgcc 5161 atttgttttt atgtatgttt gtgtacagcc agagacagcc atatatacaa tatacacata 5221 attatagccg gaacccgaat aatttgagtt gaaatgtatc tgaaatcaaa cgttgactgt 5281 tacggtccca atacacattg tatatatagg caaagctata tagttctgta tgaagttttg 5341 ttacgtatta gtcggcatgt gtaatgcgat cgaatagtga tcgatcgaac caatcgagta 5401 aaacttcgcc tttcttctcc agccatccag ccatcctaaa agtgttcagt ctcccatccc 5461 cgaagatccc gcatcagcta tatatgcttg cttttgtttc ccatcctacg tcaaatatat 5521 atatatatat atgaaatata tatagaaact ttcggttttg aatacaagaa actagcattg 5581 ggtttattat ggtaaattaa aattttactt tcctacgtat acaaaactaa agggtattat 5641 gcatatagat ctagatataa acatacttaa ataaaggaaa tgccaatttt ttaaagcttg 5701 aatttatatg aacatatttt ttagacacta tacgctatat atatatctat atatatatgg 5761 tagcaacaca aggatgtgcc ataggcgccg tcgtcgtgtc aaaacaaaaa aaaaaagaga 5821 agagaaagaa aaacctgcaa cattttttgc taaatgaatg taataaaatc taaatgaacc 5881 tagtcattaa gtccaagata aactgaaaga aacatttaaa agctaaataa atttatatat 5941 aaatgacata catatacaca tatgtaattg tacgcaaaag aa