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LOCUS XM_070218163 5815 bp mRNA linear INV 09-DEC-2024 X2, mRNA. ACCESSION XM_070218163 VERSION XM_070218163.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5815 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5815 /gene="pico" /note="pico; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108070183" CDS 209..3508 /gene="pico" /codon_start=1 /product="abnormal cell migration protein 10 isoform X2" /protein_id="XP_070074264.1" /db_xref="GeneID:108070183" /translation="MRHTLISRINLRGILVDGAASGGGAGGTGAVAGGATTAAGFVAG GDCPGIGAAAGAGVKLRRHSDRPLTPESKQLSHTYRISMANLEDSQESELDQILGELS LLEAQISYGEASLLPATINAAPLGGTMQPPPPGAVASSLVSMSAASSRSHSRTNSSIS ADVSSCSSSGISENGHGMGLGIGLPGGPVIVHPPPPLGMTMGITMGVVTPREPRTESP DNDSAFSDTVSLLSSESSASSNTSLQQQQQQQQLQQQQLQQQQQQLQQKQKQQLANSG EKQQSISKAAKIQLALHKLESASIRRLFVKAFTSDGASKSLLVDERMVCGHVTRLLAD KNHVLMQSNWALVEHLGDLQMERLFEDHELLVDNLMTWNSDAGNRVLFQQRPDKVALF LRPELYLPGPQMAPGCQHDEQTRQMLLDEFFDSHNQLQLDGPLYMKADPKKGWKRYHF VLRSSGLYYFPKEKTKNTRDLACLNLFHGHNVYTGLGWRKKWKSPTDYTFGFKAVADS SLGKTCRSLKMLCAEDLPTLDRWLTAIRVCKYGKQLWDSRKSLMEDLCLGRDADAVSQ SSFAVSMRSESISSISSAVPSQCGSVSSAISSMSHSTSGRTSRASSSSSSGCLSDDNN GFDSEFTTGTIKRKPSMKPNLPLTTMTRQLKEVGEITICESGGGGDASSPERSGTLTR RHSRRKSQESNGSGTLKRRPMPVVSSTAAAAAAAVKQAEPMGSASSTSSSSNSTPTPT PSICAKPPPGDAAASLMCSSTLSLDSLPPPPPEEDQDVYGSQLSLASLPPPPPPEEVL AMSYAGPPSPATPTPMSTMIMPNSNGSLPPAVPAKPIKPAVKQATGALKAAPPYKAPP DYVGPAAAGPPLPPPPAPPAQKKVSFADSPVLLRRKMCSPEPVLPQRSPSTTLSCSST GSAAAAYQTYAPGPMLPPRSDLARLSSQSNGSGISSEITSPKRLQESASNPPRDFLKD LQRVMRKKWQVAQKCKAEPATTPHEVLGFRDFSNEDLLAAHNLNSGANSSHYYRETAN VSHWVQEHYEYAHNALYENVHGQARTGVAGGDAGTPPLPPPPGNSVAAKKRPPPPPPK RSDKTHLTNRV" misc_feature 1109..1366 /gene="pico" /note="Ras-associating (RA) domain found in Caenorhabditis elegans abnormal cell migration protein 10 (MIG-10) and similar proteins; Region: RA_MRL_MIG10; cd16138" /db_xref="CDD:340555" misc_feature order(1124..1126,1139..1162,1208..1219,1262..1264, 1316..1321,1328..1330) /gene="pico" /note="RA-PH-RAP1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340555" misc_feature 1478..1849 /gene="pico" /note="Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain; Region: PH_APBB1IP; cd01259" /db_xref="CDD:269961" polyA_site 5815 /gene="pico" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaaaacctt ttcgagccac gcaatgactc attcagtcga ccgttgaaaa ggccataaaa 61 aaaggcaact ccatcaacag aaagtaaccg aaatgaccag taagacgtcg gcagttgtca 121 gcgatgtcag atgttataac aaccgtaaca taactcggat agtatgtgat cggcttttgg 181 acttgcaggt cttactcgag aataaaaaat gaggcacaca ttaatttcgc ggatcaacct 241 aaggggcatc ttggtggacg gcgctgccag cggcggagga gcaggcggaa caggagcagt 301 ggctggtggt gcgacgaccg ccgctggctt cgtggctggt ggggattgcc ctggaattgg 361 cgccgcagct ggcgctggcg tcaagctgcg caggcacagc gatcgtcccc tgacgccgga 421 gtccaagcag ctctcccaca cataccgcat ctccatggcc aatctggagg actcgcagga 481 gtcggagctg gaccagatcc tcggcgagct gagcctgctg gaggcgcaga tcagctacgg 541 cgaggcctcc ctgctgcccg cgaccattaa tgctgctcca ctgggaggaa caatgcagcc 601 accaccgccc ggagcggtgg cttcgtcatt ggtttccatg tcggccgcct cgtcgcgctc 661 ccattcgcgg accaacagca gcatctcggc ggacgtgagc agctgctcgt cgtcggggat 721 ctcggagaat ggtcatggga tgggtctggg aattggactg ccaggcggac cagtgattgt 781 ccatccaccg cctccgctcg gcatgaccat gggcataacg atgggcgttg tgacgccccg 841 tgaaccgcgc accgagtcgc ccgataatga ttcggccttt agcgataccg tatccctctt 901 gtccagcgaa tcgtcggcct cctcgaacac atccctgcag caacaacagc aacagcagca 961 actgcagcag cagcagctgc aacagcaaca gcagcagctt cagcagaagc agaagcaaca 1021 gctggccaac agcggcgaga agcagcagag tatctcgaag gcggccaaga tccagttggc 1081 tttgcacaag ctggagagcg cctccatccg gcggctgttc gtcaaggcct tcacctcgga 1141 cggcgcctcc aagtcgctgc tggtggacga gcgcatggtc tgcggtcatg tgacgcggct 1201 gctggccgac aagaatcacg tgcttatgca gtccaactgg gcgctggtgg agcacctggg 1261 cgatcttcag atggaacgcc tcttcgagga ccacgagctg ctggtggaca acctaatgac 1321 ctggaactcg gacgccggca atcgcgtgct cttccagcag cgacccgaca aggtggctct 1381 gtttttgcgc cccgaactct atctgccggg accccagatg gcgcccggtt gccagcatga 1441 cgagcagacg cggcagatgc tgctcgacga gttcttcgac tcgcacaatc agctgcagtt 1501 ggacggaccg ctctacatga aggccgatcc caagaagggc tggaagcggt atcactttgt 1561 gttgcgctcc tcgggtctct actactttcc caaggagaag accaagaaca cccgtgacct 1621 ggcctgcctg aatctctttc acggccacaa cgtgtacacc ggtttggggt ggcgcaagaa 1681 gtggaagtcg ccgaccgact acacctttgg cttcaaggcg gtggccgatt cctcgctggg 1741 caagacgtgc cgctccctca agatgctctg cgccgaggat ctgcccacgc tcgaccgctg 1801 gctgacggcc attcgggtgt gcaagtacgg caagcagctg tgggacagcc gcaagtcgct 1861 aatggaggat ctctgcttgg gccgcgatgc cgatgccgtt tcgcagtcga gcttcgccgt 1921 ctccatgcgc agcgagtcga tctcgagcat ctcgtcggcg gtgccctcgc aatgcggcag 1981 cgtttcctcg gccatcagca gcatgtccca ttcgaccagc ggccgcacgt cgcgcgcctc 2041 gagcagcagc tccagcggct gcctgtcgga cgacaacaac ggcttcgact cggaattcac 2101 cacgggcacc attaagcgca agccctcgat gaagcccaac ctgccgctca cgacgatgac 2161 gcgccagctg aaggaggtgg gcgagattac gatctgtgag agcggcggcg gcggcgatgc 2221 cagttccccc gagagaagcg gtacgctgac gcgacgccac agccgccgca agtcgcagga 2281 gagcaacggc agtggaacgc tcaagcggcg acccatgccg gtggttagca gcactgcggc 2341 ggcggcggcg gcggcggtca agcaggcgga gcccatgggc agtgcctcct ccacgtcgtc 2401 cagcagcaat tccacgccca cgcccacgcc gagcatctgc gccaagccgc cgccgggcga 2461 tgcagccgcc tcgctgatgt gctcatccac gctctccttg gactcgctgc ccccgccgcc 2521 gccggaggag gatcaggatg tgtacggttc gcagctgtcg ctggcttccc tgccgccgcc 2581 accgccgccc gaggaggtgc tggccatgag ctatgcaggg ccgcccagtc cagccactcc 2641 cacaccaatg agcacaatga tcatgccgaa cagcaatgga tcgctgccgc cggcagtgcc 2701 ggccaagccg atcaagccgg cggttaagca agcgactggc gctctgaagg cagcgccacc 2761 atacaaagcg ccgccggatt atgtgggtcc cgccgccgcc ggaccgccgc tgccgccgcc 2821 gccggcgcct cccgcccaga agaaggtctc gtttgcggac tcgccggtgc tgctgcgccg 2881 caagatgtgc tcaccggagc cggtgctgcc gcagcgatcg cccagcacca cgctgagctg 2941 cagctcgacg ggatcagcgg ccgccgccta tcagacctac gctccgggac cgatgctgcc 3001 gccgcgatcg gatctggcgc gtctgtccag ccagagcaac gggagcggga ttagtagcga 3061 gatcacctcg cccaagcgcc tgcaggagtc cgcctcgaat ccgccccgcg acttcctcaa 3121 ggatctgcag cgtgtgatgc gcaagaagtg gcaggtggcg cagaagtgca aggcggagcc 3181 ggccaccacg ccccacgagg tgctgggctt ccgggacttt agcaacgagg atctgctggc 3241 cgcccacaac ctaaattcgg gggccaactc ctcgcactac taccgcgaaa cggccaacgt 3301 gagccactgg gtgcaggagc actacgagta tgcgcataac gcgctctacg agaacgtcca 3361 cggccaggcg aggacggggg tagctggcgg agatgcgggc acaccgccgc tgccgccgcc 3421 gcccggcaac tcggtggcgg ccaagaagcg tccgccgccg ccgccgccga agaggagcga 3481 caagacgcac ctgaccaacc gggtgtagga tctaactgaa gaagagtgca atccgcacaa 3541 tcttcagtct ccagaggagg gaatttcgtg ccggagcgca aatatttact tgtctacgag 3601 aaagcaaaga aaatgaatct tacaaattcc tatttaagtc taggcgacaa ctaagcgaga 3661 tggaagaaaa agcactaatt gaatcataca tacatgtatg actatatata ttttctaaga 3721 atatgctatg gccacgccca cttctcttac aaaagtatta cgcataacag agaatcaaac 3781 tgtagaaact ccttttttaa gttcagtgtc aaaccgcgtc aaaagggtca acaaatttgt 3841 ggccatctac tcaaggtttt agataatatt tttgagcttt tcgctaaatg caaaatgggt 3901 ttttctttat tcgtttttta aatttaagaa tattaaaaga gcgcagtaaa aatatagtat 3961 ttttgttgac ccttttgact ctgtttgatt attcaaccat atttctgatt aatttcgtaa 4021 atcgaaaact cagaaaaaga aaaggagctc tgcactagta aaaatattta agataaattt 4081 tagtttgtaa aaagaagaga aaaattaatt tttaaaacga tagtgcatta tttaaaaaac 4141 actaaattag cgttagataa gtgtacaatg tttttatata tacatgcact ttttaattgt 4201 tcagttgctc ttagtattga tattttatat ttttttttcg ataatctttg taacggtaga 4261 gtgaacgttt tgtaagcgca tgaaatgcgc tgcgctagca aaggaaatgc cttataaagc 4321 atataaacct aaatagggaa agccctgcat atacacctaa tatatatatt aatgcatata 4381 tatatgtgta tgtatgtgtg ttgatctatc caaattattt gctgtttaaa gcgatactat 4441 tctttttacc cacaaatttt aattccacat tgattgttca gttgaaataa caaagtgctt 4501 agttttcaaa agatttgtca agttcctcaa atagtgttac aattatcatt ctctttgtac 4561 ttataccgaa ccgcagataa gacagacaga tcagccataa aatgcaattt gtatgtgcaa 4621 atcaaactat ttcaattgaa ggcaataaga gaaaatggaa ttatttctgt acacaaatca 4681 aatatgtaat tgtaattgta ataatatata aattaatatt ttcctaaatt tcgtttacaa 4741 attttgtttc ccaacatatc atttcttaag cgttcctata ggttcaattt ttatgtgcat 4801 gcaggcattg aatacgttca ataaagctta attctttggg gattcttttc ccaaaagaaa 4861 ttatgcgtag aatagctttc gattcgctac gactaaatat atattgcatt ctttaaatgg 4921 acgatttaat atcattgatc gattaagtat ttgatcattt ttgtaattgt tttcgtgtag 4981 taacttgttt gccatttgtt tttatgtatg tttgtgtaca gccagagaca gccatatata 5041 caatatacac ataattatag ccggaacccg aataatttga gttgaaatgt atctgaaatc 5101 aaacgttgac tgttacggtc ccaatacaca ttgtatatat aggcaaagct atatagttct 5161 gtatgaagtt ttgttacgta ttagtcggca tgtgtaatgc gatcgaatag tgatcgatcg 5221 aaccaatcga gtaaaacttc gcctttcttc tccagccatc cagccatcct aaaagtgttc 5281 agtctcccat ccccgaagat cccgcatcag ctatatatgc ttgcttttgt ttcccatcct 5341 acgtcaaata tatatatata tatatgaaat atatatagaa actttcggtt ttgaatacaa 5401 gaaactagca ttgggtttat tatggtaaat taaaatttta ctttcctacg tatacaaaac 5461 taaagggtat tatgcatata gatctagata taaacatact taaataaagg aaatgccaat 5521 tttttaaagc ttgaatttat atgaacatat tttttagaca ctatacgcta tatatatatc 5581 tatatatata tggtagcaac acaaggatgt gccataggcg ccgtcgtcgt gtcaaaacaa 5641 aaaaaaaaag agaagagaaa gaaaaacctg caacattttt tgctaaatga atgtaataaa 5701 atctaaatga acctagtcat taagtccaag ataaactgaa agaaacattt aaaagctaaa 5761 taaatttata tataaatgac atacatatac acatatgtaa ttgtacgcaa aagaa