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LOCUS XM_070218157 5505 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_070218157 VERSION XM_070218157.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5505 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5505 /gene="Hr4" /note="Hormone receptor 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056780" CDS 19..5496 /gene="Hr4" /codon_start=1 /product="hormone receptor 4 isoform X4" /protein_id="XP_070074258.1" /db_xref="GeneID:108056780" /translation="MNAQQPLILEQPKASSVVVVAASPAAEIEAATSTEAVASASATS PESISNTQNGSGINGNNHGCRRISQEEQDQQDQKDHNDQVKDVVANKLTIIKTPLNKT LLKKCNSNGSLQLQLQPHNNGNSNLSSNNNNSTRNSNNSANSDNIEIGACDSGLQSGN SNEQEPFANNNNDRHHHIYHHHHHHYHHHHGGGGGGDDKGETTSGDVASSSSADLRQV KEEPSLQDNDNHVKATAGEEEADKGGAAAEGAIGGATATATAAATAATPCNPSKCNKC NSHNNNSNCNNNNNTISNNNNNTNNNNNINNNNHYNNYNNYYKKKSRMPPICRIMTLS RGPYSELDKMSLFQDLKLKRRKIDSRCSSDGESIADTSTSSPDLLAPMSPKLCDGGLG PGASSVGVGGVSLNLPLPLPMSLPLPLPLPLTSASSATAAVTVSLAAVVAAVAEGSGG GSVAGTTVVTASVAGPCVSTSSTTTAAAASSSTPSSLSSSLSSSSSSSSTNSSSSSST STTAGATSSTTATCPASSSSSSNKSGGSIKQELHTEIHSSSSAISAAAASTVMSPPPA EPARSSPETPTNESGSGGATGGSGGSATGGSAINEHQNNGNGSGGSSRASPDSLEEKP STTTTPTNGVMSSGGGAGNGGGATGSSAKLSEAGMSVIRSVKEERLLSVSSKMMAFHQ QREQESKAAGHVTVLVTPSRIKSEPPPPASPSSTSSTLRERERERERERERERERDRE RDISSSQQHLSSRISASGSPPTQLGHGQGAMGATIVQTHHLHQQLTQPLTLRKSSPPT EHLLSQSMQHLTQQQALHLHHLLGQQQQQQASHPQQQQQQQQQQQQQQQQQQQHSPHS LVRVKKEPNVGQRHLSPHHQQQSPHLQQQQQQQHLHQQQQQHLHQQQHHQQQQQPQAL ALMHPASLALRNSNRDAAILFRVKSEVHQQVAAGLPHLMQSAGGAAAAAAAAVAAQRM VCFSNARINGVKPEVIGGPLGNLRPVGGGGNGGGGLSGGGGGGGSSVQCPSPHPSSSS SSSQLSPQTPSQTPPRGTPTVIMGESCGVRTMVWGYEPPPPTVGQSVGGQQQQQQHPQ QQQQQQSPHHQPQQQQQQQHCLSSPSAGSLTPSSSGGGSVGGPLTPSSSVTPQNNEEA AQLLLSLGQTRIQDMRARPHPFRTPHALNMERLWAGDYSQLPPGQLQALNLSAQQQQW GSSNSGGGLGGGVGGGLGGRGGGLEAPHEPTDEDEQPLVCMICEDKATGLHYGIITCE GCKGFFKRTVQNRRVYTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMP GGRNSGAVYNLYKVKYKKHKKTNQKQQQQAAQQQQQQQQAAAQQQHQQQQHQQQQQHQ QHQQLHSPLHHHHHQVGHQSHHPQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQ QQQQQQQQAKLMDMKPMFLGPVLKPELLQAPPMHSPAQQQQQSSPHLSLSSPHQQQQQ QQNHHQQQQPGGVSGAQLPPHLVNGTILKTALTNPSEIVHLRHRLDSAVSSSKDRQIS YEHAVAMIQTLIDCDAMEDIATLPHFSEFLEDKSEISEKLCNIGDSIVHKLVSWTKKL PFYLEIPVEIHTKLLTDKWHEILILTTAAYQALHGKRRSGDSGSSRHSSPASTPSTLV TSPPGTPNASPAAQPLHKDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHM VDKMTQITIMFRRIKLKMEEYVCLKVYILLNKAEVELESIQERYVQVLRSYLQNSSPQ NPQARLSELLSHIPEIQAAASLLLESKMFYVPFVLNSASIR" misc_feature 3724..3993 /gene="Hr4" /note="DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers; Region: NR_DBD_DHR4_like; cd07168" /db_xref="CDD:143542" misc_feature order(3748..3750,3757..3759,3799..3801,3808..3810, 3856..3858,3874..3876,3904..3906,3913..3915) /gene="Hr4" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143542" misc_feature order(3778..3786,3802..3807,3811..3813,3817..3819, 3826..3828,3835..3837,3895..3900,3907..3909,3916..3918, 3949..3951,3958..3960) /gene="Hr4" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:143542" misc_feature 4699..5481 /gene="Hr4" /note="The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4; Region: NR_LBD_DHR4_like; cd06953" /db_xref="CDD:132751" misc_feature order(4789..4794,4804..4806,4906..4908,4918..4920, 4927..4929,5128..5130,5197..5199) /gene="Hr4" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:132751" misc_feature order(4819..4821,4828..4830,4840..4842,4855..4857, 4870..4875,4879..4884,4891..4896) /gene="Hr4" /note="putative coactivator recognition site [active]" /db_xref="CDD:132751" ORIGIN 1 ccccgatttg ccgcccaaat gaatgcccag cagccgctga tcctggagca gccaaaggcc 61 agcagtgttg ttgttgttgc tgcatcgcca gctgcggaaa ttgaggcggc aacgagcacg 121 gaagcggtgg caagtgcatc tgcaacatcg ccggaatcga tttcgaatac ccaaaatggt 181 agcggaatta atggcaataa tcatggctgc cgacggatca gccaggagga gcaggatcag 241 caggatcaga aggatcacaa tgaccaggtc aaggatgtgg tggccaataa gctgaccatt 301 atcaagacgc cgttgaacaa gacgctgctg aagaagtgca acagcaatgg cagcctgcaa 361 ctgcaactgc aaccgcacaa taatggtaac agcaacctca gtagcaacaa caacaatagc 421 actcgcaaca gcaacaacag tgcgaatagc gacaacatcg agattggcgc ctgcgattcc 481 ggtttgcaaa gcggaaatag caatgaacaa gaaccatttg ccaacaacaa taatgatcgc 541 catcatcaca tttaccacca ccaccatcat cactatcatc atcatcatgg cggcggcggc 601 ggcggcgatg ataagggcga aacaacgagc ggcgatgttg catcctcatc ctcggcggac 661 ttgaggcagg tcaaggagga gccatcgctg caggataatg acaatcatgt gaaggcaaca 721 gcaggagaag aagaagctga taaaggagga gcagcagcag agggagcaat tggaggagca 781 actgcaactg caacagcagc agcaacagca gcaacacctt gcaatcccag caagtgcaac 841 aagtgcaatt cgcacaacaa caacagcaac tgcaacaaca acaataatac catcagcaat 901 aataataaca ataccaacaa caacaacaac atcaacaaca ataaccatta caacaattac 961 aataactatt ataagaaaaa gtctcgtatg ccgcccattt gccgaattat gacactgagc 1021 cgtggcccgt acagcgagct cgataaaatg agcctttttc aagacctcaa actcaaacgg 1081 cggaaaatcg attcgcgatg cagcagtgac ggcgagtcca tagcggacac gtccacctcg 1141 tcgccggatc tgctggcgcc catgtcgccg aagctctgcg acggcggatt gggcccaggg 1201 gcatcgtcgg tgggggtggg gggtgtgtcc ctgaacctgc ccctgccgct gcccatgtcg 1261 ctgcccctgc ccctgccctt gccactgact tcggcctctt cggcgacggc ggcggtcacc 1321 gtttcgctgg cagcggtggt ggcggcagtg gccgagggat ccggtggagg atcggtagcc 1381 gggacgacag tggtgacggc ctcggtggcg ggaccctgcg tctccacctc ctcgacgacg 1441 acggcggcgg cggccagctc ctcgaccccc tcctcgctat cgtcctcgct atcctcctcc 1501 tcctcgtcat cgtcgaccaa ctcctccagc agcagcagca cctccaccac cgcaggagcc 1561 acctcctcca ccacggccac ctgtccagcc agcagcagca gcagtagcaa taaaagcgga 1621 ggcagcatca agcaggagct ccacacggag atccactcct cgagcagcgc gatttcggcg 1681 gcagccgcct ccacggtgat gtcaccgccg cccgcagagc cggcgagatc gagtccagaa 1741 acgcccacaa acgaatcggg atcgggagga gcaacaggag gatcaggagg atcagcaact 1801 ggaggatctg caatcaatga acaccaaaac aatggcaacg gaagcggggg cagcagtcgc 1861 gcctcgcccg attcgctgga ggagaagccc tcgaccacga cgacgcccac gaatggggtg 1921 atgtcatccg gaggaggagc aggaaatgga ggaggagcca ccggaagcag cgccaagctg 1981 agcgaggcgg gaatgagtgt gatacgctcc gttaaagagg agcgtctgct cagcgtctcc 2041 agcaagatga tggccttcca ccagcagcgg gagcaggaga gcaaggcggc gggacatgtg 2101 acggttctag tgacgccctc gaggatcaaa tcggagccac cgccacccgc ctcgccctcc 2161 tccacatcca gcactctaag ggaaagggaa agggagaggg aaagggagag agaaagggaa 2221 agggaacgag atagagagcg ggacatcagc tcctcgcagc agcatctgag cagcaggatc 2281 tcggccagcg gttcgccgcc cactcagctg ggacacggac agggcgccat gggagccacc 2341 atcgtccaga cgcaccatct ccaccagcaa ctcacccagc cactgacttt gcgcaagagc 2401 agcccgccca cggagcattt gctcagccag tcgatgcagc atctcaccca gcagcaggcc 2461 ctccacctgc accacctgct cggccagcag cagcagcagc aggcgtcgca tccccagcag 2521 caacagcaac agcagcaaca gcaacagcag caacagcagc agcagcagca acactcgccg 2581 cactccttgg tgcgcgtgaa gaaggaaccg aatgtgggcc agcggcactt atcgccccat 2641 caccagcagc aatcgccgca cctgcaacag caacagcagc agcaacacct acaccagcag 2701 cagcagcaac acctacacca gcagcaacac caccagcagc agcagcaacc acaggcgctg 2761 gccctcatgc atcccgcctc gttggcgctg aggaacagca accgggatgc ggccattctg 2821 tttcgggtga agagcgaggt gcaccagcag gtggccgccg ggctgccgca tctgatgcag 2881 tccgccggcg gagcagcggc ggcagcagcg gcggcagtgg ccgcccagcg gatggtctgc 2941 ttcagcaatg cgcggatcaa cggggtcaag ccggaggtga ttggcggacc gctgggcaat 3001 ttgcgaccgg tgggtggagg tggcaacgga ggaggcggtt tgagtggcgg cggaggagga 3061 gggggctcat ccgtgcaatg cccctcgccg catccctcct cctcctcctc ctcgtcgcag 3121 ctgtcgccgc agacgccctc gcagacgccg ccccgcggca cgcccaccgt catcatgggc 3181 gagagctgcg gggtgcggac catggtctgg ggctacgagc caccgccgcc aacggtgggt 3241 cagtcggtgg ggggacagca gcaacagcag cagcatcccc agcagcaaca gcagcaacag 3301 tcgccgcacc accagccgca acagcagcag cagcagcaac actgcctctc ctcgccctcc 3361 gccggctccc tgacgccctc ctcctccggc ggcggctcgg tgggcggacc cctgacgccc 3421 tcgtcctcgg tgacgccgca gaacaacgag gaggccgccc agctgctgct ctccctggga 3481 cagacgcgca tccaggacat gcgggccagg ccgcatccct tccgcacgcc gcatgccctc 3541 aacatggaac gcctgtgggc gggcgactac tcgcaactgc cgcccggtca actgcaggcc 3601 ctcaatctga gtgcccagca gcagcagtgg ggcagcagca actcgggcgg cggactgggc 3661 ggcggagtgg gcggaggact gggcggaagg ggcggaggcc tggaggcgcc gcacgagcca 3721 accgacgagg acgaacagcc gctcgtctgc atgatctgcg aggacaaggc cactgggctg 3781 cactacggca tcatcacgtg cgaggggtgc aagggcttct tcaagcggac ggtgcagaac 3841 cgacgcgtct acacctgcgt ggcggacggc acctgcgaga taaccaaagc acagcgcaac 3901 cgttgtcagt attgtcgatt taagaagtgc atcgagcagg gcatggtgct gcaagccgtt 3961 cgcgaggatc gcatgccggg cggtcgcaac agcggcgccg tctacaattt gtacaaggtg 4021 aagtacaaga agcacaagaa gaccaaccag aagcagcagc agcaggccgc ccagcagcag 4081 cagcagcagc aacaggcggc ggcgcagcag caacaccagc agcagcaaca ccagcagcag 4141 cagcaacatc agcagcacca gcagctgcac tcgccgctgc accatcacca ccaccaggtg 4201 ggtcaccagt cgcaccaccc gcagcagcag caccacccgc agctgtcgcc gcaccacctg 4261 ttgtcgccgc aacagcagca actggccgcc gcggtggccg cagctgcgca gcaccaacag 4321 cagcagcagc aacagcaaca gcagcagcag gccaagctga tggacatgaa gcccatgttc 4381 ctgggaccgg tgctcaaacc ggagcttctc caggcaccgc ccatgcacag tccggcgcag 4441 cagcagcaac agtcgtcgcc gcatctctcg ctcagctcgc cgcaccagca gcagcagcag 4501 caacagaatc accaccagca acagcaacca ggtggagtat ctggggcaca actgccgccg 4561 catctcgtaa acggaacgat actgaaaacg gcgctgacca atcccagcga gattgtgcat 4621 ctgcgccacc gcctcgactc ggcggtgagc tcctcgaagg accggcagat ctcctacgag 4681 cacgccgtgg ccatgatcca aacgctgatc gactgcgatg ccatggagga catcgccacg 4741 ctgccgcact tcagcgagtt cctcgaggac aagtcggaga tcagcgagaa gctgtgcaac 4801 atcggcgact cgattgtgca caagctggtg tcgtggacca agaagctgcc cttctatctg 4861 gagatccccg tggagataca caccaagttg ctgacggaca agtggcatga gatactcatc 4921 ctgacgacgg ccgcctatca ggcgttgcat ggcaagcggc ggagcggcga cagcggcagc 4981 agcaggcaca gttcaccagc ctcgacgccc tcgacgctgg ttacctcgcc accgggaacg 5041 cccaatgcct cgcccgccgc ccagccgctg cacaaggacg atccggagtt cgtgagcgag 5101 gtgaactcgc atctgagcac cctgcagacc tgcctgacca cgctgatggg tcaaccgatt 5161 gccatggagc agctgaagct ggacgttggc catatggtgg ataagatgac ccagatcacg 5221 atcatgttcc ggcgcattaa gctcaagatg gaggagtacg tttgcctgaa ggtctacata 5281 ctgctgaaca aagcagaagt ggaactggag agcatccagg agcggtatgt ccaggtgctg 5341 cgctcctacc tgcagaactc ctcgccgcag aatccgcagg cgaggctcag cgagctgctc 5401 tcccacatac cagagatcca ggctgccgcc agtctgctgc tcgagagcaa gatgttctat 5461 gtgcccttcg tgctcaactc ggcgagcata aggtagcaga tgctt