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LOCUS XM_070218156 5152 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_070218156 VERSION XM_070218156.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5152 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5152 /gene="Hr4" /note="Hormone receptor 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108056780" CDS 626..5143 /gene="Hr4" /codon_start=1 /product="hormone receptor 4 isoform X3" /protein_id="XP_070074257.1" /db_xref="GeneID:108056780" /translation="MPGPALWSGIMTLSRGPYSELDKMSLFQDLKLKRRKIDSRCSSD GESIADTSTSSPDLLAPMSPKLCDGGLGPGASSVGVGGVSLNLPLPLPMSLPLPLPLP LTSASSATAAVTVSLAAVVAAVAEGSGGGSVAGTTVVTASVAGPCVSTSSTTTAAAAS SSTPSSLSSSLSSSSSSSSTNSSSSSSTSTTAGATSSTTATCPASSSSSSNKSGGSIK QELHTEIHSSSSAISAAAASTVMSPPPAEPARSSPETPTNESGSGGATGGSGGSATGG SAINEHQNNGNGSGGSSRASPDSLEEKPSTTTTPTNGVMSSGGGAGNGGGATGSSAKL SEAGMSVIRSVKEERLLSVSSKMMAFHQQREQESKAAGHVTVLVTPSRIKSEPPPPAS PSSTSSTLRERERERERERERERERDRERDISSSQQHLSSRISASGSPPTQLGHGQGA MGATIVQTHHLHQQLTQPLTLRKSSPPTEHLLSQSMQHLTQQQALHLHHLLGQQQQQQ ASHPQQQQQQQQQQQQQQQQQQQHSPHSLVRVKKEPNVGQRHLSPHHQQQSPHLQQQQ QQQHLHQQQQQHLHQQQHHQQQQQPQALALMHPASLALRNSNRDAAILFRVKSEVHQQ VAAGLPHLMQSAGGAAAAAAAAVAAQRMVCFSNARINGVKPEVIGGPLGNLRPVGGGG NGGGGLSGGGGGGGSSVQCPSPHPSSSSSSSQLSPQTPSQTPPRGTPTVIMGESCGVR TMVWGYEPPPPTVGQSVGGQQQQQQHPQQQQQQQSPHHQPQQQQQQQHCLSSPSAGSL TPSSSGGGSVGGPLTPSSSVTPQNNEEAAQLLLSLGQTRIQDMRARPHPFRTPHALNM ERLWAGDYSQLPPGQLQALNLSAQQQQWGSSNSGGGLGGGVGGGLGGRGGGLEAPHEP TDEDEQPLVCMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITKAQ RNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVKYKKHKKTNQKQQQQA AQQQQQQQQAAAQQQHQQQQHQQQQQHQQHQQLHSPLHHHHHQVGHQSHHPQQQHHPQ LSPHHLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQAKLMDMKPMFLGPVLKPELLQA PPMHSPAQQQQQSSPHLSLSSPHQQQQQQQNHHQQQQPGGVSGAQLPPHLVNGTILKT ALTNPSEIVHLRHRLDSAVSSSKDRQISYEHAVAMIQTLIDCDAMEDIATLPHFSEFL EDKSEISEKLCNIGDSIVHKLVSWTKKLPFYLEIPVEIHTKLLTDKWHEILILTTAAY QALHGKRRSGDSGSSRHSSPASTPSTLVTSPPGTPNASPAAQPLHKDDPEFVSEVNSH LSTLQTCLTTLMGQPIAMEQLKLDVGHMVDKMTQITIMFRRIKLKMEEYVCLKVYILL NKAEVELESIQERYVQVLRSYLQNSSPQNPQARLSELLSHIPEIQAAASLLLESKMFY VPFVLNSASIR" misc_feature 3371..3640 /gene="Hr4" /note="DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers; Region: NR_DBD_DHR4_like; cd07168" /db_xref="CDD:143542" misc_feature order(3395..3397,3404..3406,3446..3448,3455..3457, 3503..3505,3521..3523,3551..3553,3560..3562) /gene="Hr4" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143542" misc_feature order(3425..3433,3449..3454,3458..3460,3464..3466, 3473..3475,3482..3484,3542..3547,3554..3556,3563..3565, 3596..3598,3605..3607) /gene="Hr4" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:143542" misc_feature 4346..5128 /gene="Hr4" /note="The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4; Region: NR_LBD_DHR4_like; cd06953" /db_xref="CDD:132751" misc_feature order(4436..4441,4451..4453,4553..4555,4565..4567, 4574..4576,4775..4777,4844..4846) /gene="Hr4" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:132751" misc_feature order(4466..4468,4475..4477,4487..4489,4502..4504, 4517..4522,4526..4531,4538..4543) /gene="Hr4" /note="putative coactivator recognition site [active]" /db_xref="CDD:132751" ORIGIN 1 agccagccaa agcgcacaca ctgcgtatga gtaatattcg cactacgaaa ccaaacaacc 61 aagccaaaaa aaaaatcaaa caaaaaatct agcaaaaaat ccccaattaa tcacgcaaca 121 agagtaaaaa aaaaagaaac aaattgcaat aatcaaagaa aagtcaaagc caagtcaaaa 181 aattaaataa ataaaataag aaagaaaaaa aagagcaagg tgagagggga gaggggagca 241 agtgcagcgc tgccaacggc gacggcgacg cgggcagcgg tacgggcttt gttttggctt 301 cagttttggc ccagcagctt cgacttcagt tcgattcgtg attcgtggtt cgtagctctt 361 aaggcgcgca aagaaaatcc caaatcgaaa atcgagaaaa actgcagtac aatagatcta 421 aatatttttt tggagtgagt tctagacttg agtgttgaaa acgaaacaat gttgcacttg 481 caattaccac ccgcagtggg gggaaattga aaaaaaaaaa agagttcaac accgggggtg 541 aacaaaaaaa gttgacaaca aaaaaaaaac accgaaaaaa aaaacaggag cccccaagac 601 gtcacgcaaa caacaacaac cagctatgcc tggcccggct ttgtggtccg gaattatgac 661 actgagccgt ggcccgtaca gcgagctcga taaaatgagc ctttttcaag acctcaaact 721 caaacggcgg aaaatcgatt cgcgatgcag cagtgacggc gagtccatag cggacacgtc 781 cacctcgtcg ccggatctgc tggcgcccat gtcgccgaag ctctgcgacg gcggattggg 841 cccaggggca tcgtcggtgg gggtgggggg tgtgtccctg aacctgcccc tgccgctgcc 901 catgtcgctg cccctgcccc tgcccttgcc actgacttcg gcctcttcgg cgacggcggc 961 ggtcaccgtt tcgctggcag cggtggtggc ggcagtggcc gagggatccg gtggaggatc 1021 ggtagccggg acgacagtgg tgacggcctc ggtggcggga ccctgcgtct ccacctcctc 1081 gacgacgacg gcggcggcgg ccagctcctc gaccccctcc tcgctatcgt cctcgctatc 1141 ctcctcctcc tcgtcatcgt cgaccaactc ctccagcagc agcagcacct ccaccaccgc 1201 aggagccacc tcctccacca cggccacctg tccagccagc agcagcagca gtagcaataa 1261 aagcggaggc agcatcaagc aggagctcca cacggagatc cactcctcga gcagcgcgat 1321 ttcggcggca gccgcctcca cggtgatgtc accgccgccc gcagagccgg cgagatcgag 1381 tccagaaacg cccacaaacg aatcgggatc gggaggagca acaggaggat caggaggatc 1441 agcaactgga ggatctgcaa tcaatgaaca ccaaaacaat ggcaacggaa gcgggggcag 1501 cagtcgcgcc tcgcccgatt cgctggagga gaagccctcg accacgacga cgcccacgaa 1561 tggggtgatg tcatccggag gaggagcagg aaatggagga ggagccaccg gaagcagcgc 1621 caagctgagc gaggcgggaa tgagtgtgat acgctccgtt aaagaggagc gtctgctcag 1681 cgtctccagc aagatgatgg ccttccacca gcagcgggag caggagagca aggcggcggg 1741 acatgtgacg gttctagtga cgccctcgag gatcaaatcg gagccaccgc cacccgcctc 1801 gccctcctcc acatccagca ctctaaggga aagggaaagg gagagggaaa gggagagaga 1861 aagggaaagg gaacgagata gagagcggga catcagctcc tcgcagcagc atctgagcag 1921 caggatctcg gccagcggtt cgccgcccac tcagctggga cacggacagg gcgccatggg 1981 agccaccatc gtccagacgc accatctcca ccagcaactc acccagccac tgactttgcg 2041 caagagcagc ccgcccacgg agcatttgct cagccagtcg atgcagcatc tcacccagca 2101 gcaggccctc cacctgcacc acctgctcgg ccagcagcag cagcagcagg cgtcgcatcc 2161 ccagcagcaa cagcaacagc agcaacagca acagcagcaa cagcagcagc agcagcaaca 2221 ctcgccgcac tccttggtgc gcgtgaagaa ggaaccgaat gtgggccagc ggcacttatc 2281 gccccatcac cagcagcaat cgccgcacct gcaacagcaa cagcagcagc aacacctaca 2341 ccagcagcag cagcaacacc tacaccagca gcaacaccac cagcagcagc agcaaccaca 2401 ggcgctggcc ctcatgcatc ccgcctcgtt ggcgctgagg aacagcaacc gggatgcggc 2461 cattctgttt cgggtgaaga gcgaggtgca ccagcaggtg gccgccgggc tgccgcatct 2521 gatgcagtcc gccggcggag cagcggcggc agcagcggcg gcagtggccg cccagcggat 2581 ggtctgcttc agcaatgcgc ggatcaacgg ggtcaagccg gaggtgattg gcggaccgct 2641 gggcaatttg cgaccggtgg gtggaggtgg caacggagga ggcggtttga gtggcggcgg 2701 aggaggaggg ggctcatccg tgcaatgccc ctcgccgcat ccctcctcct cctcctcctc 2761 gtcgcagctg tcgccgcaga cgccctcgca gacgccgccc cgcggcacgc ccaccgtcat 2821 catgggcgag agctgcgggg tgcggaccat ggtctggggc tacgagccac cgccgccaac 2881 ggtgggtcag tcggtggggg gacagcagca acagcagcag catccccagc agcaacagca 2941 gcaacagtcg ccgcaccacc agccgcaaca gcagcagcag cagcaacact gcctctcctc 3001 gccctccgcc ggctccctga cgccctcctc ctccggcggc ggctcggtgg gcggacccct 3061 gacgccctcg tcctcggtga cgccgcagaa caacgaggag gccgcccagc tgctgctctc 3121 cctgggacag acgcgcatcc aggacatgcg ggccaggccg catcccttcc gcacgccgca 3181 tgccctcaac atggaacgcc tgtgggcggg cgactactcg caactgccgc ccggtcaact 3241 gcaggccctc aatctgagtg cccagcagca gcagtggggc agcagcaact cgggcggcgg 3301 actgggcggc ggagtgggcg gaggactggg cggaaggggc ggaggcctgg aggcgccgca 3361 cgagccaacc gacgaggacg aacagccgct cgtctgcatg atctgcgagg acaaggccac 3421 tgggctgcac tacggcatca tcacgtgcga ggggtgcaag ggcttcttca agcggacggt 3481 gcagaaccga cgcgtctaca cctgcgtggc ggacggcacc tgcgagataa ccaaagcaca 3541 gcgcaaccgt tgtcagtatt gtcgatttaa gaagtgcatc gagcagggca tggtgctgca 3601 agccgttcgc gaggatcgca tgccgggcgg tcgcaacagc ggcgccgtct acaatttgta 3661 caaggtgaag tacaagaagc acaagaagac caaccagaag cagcagcagc aggccgccca 3721 gcagcagcag cagcagcaac aggcggcggc gcagcagcaa caccagcagc agcaacacca 3781 gcagcagcag caacatcagc agcaccagca gctgcactcg ccgctgcacc atcaccacca 3841 ccaggtgggt caccagtcgc accacccgca gcagcagcac cacccgcagc tgtcgccgca 3901 ccacctgttg tcgccgcaac agcagcaact ggccgccgcg gtggccgcag ctgcgcagca 3961 ccaacagcag cagcagcaac agcaacagca gcagcaggcc aagctgatgg acatgaagcc 4021 catgttcctg ggaccggtgc tcaaaccgga gcttctccag gcaccgccca tgcacagtcc 4081 ggcgcagcag cagcaacagt cgtcgccgca tctctcgctc agctcgccgc accagcagca 4141 gcagcagcaa cagaatcacc accagcaaca gcaaccaggt ggagtatctg gggcacaact 4201 gccgccgcat ctcgtaaacg gaacgatact gaaaacggcg ctgaccaatc ccagcgagat 4261 tgtgcatctg cgccaccgcc tcgactcggc ggtgagctcc tcgaaggacc ggcagatctc 4321 ctacgagcac gccgtggcca tgatccaaac gctgatcgac tgcgatgcca tggaggacat 4381 cgccacgctg ccgcacttca gcgagttcct cgaggacaag tcggagatca gcgagaagct 4441 gtgcaacatc ggcgactcga ttgtgcacaa gctggtgtcg tggaccaaga agctgccctt 4501 ctatctggag atccccgtgg agatacacac caagttgctg acggacaagt ggcatgagat 4561 actcatcctg acgacggccg cctatcaggc gttgcatggc aagcggcgga gcggcgacag 4621 cggcagcagc aggcacagtt caccagcctc gacgccctcg acgctggtta cctcgccacc 4681 gggaacgccc aatgcctcgc ccgccgccca gccgctgcac aaggacgatc cggagttcgt 4741 gagcgaggtg aactcgcatc tgagcaccct gcagacctgc ctgaccacgc tgatgggtca 4801 accgattgcc atggagcagc tgaagctgga cgttggccat atggtggata agatgaccca 4861 gatcacgatc atgttccggc gcattaagct caagatggag gagtacgttt gcctgaaggt 4921 ctacatactg ctgaacaaag cagaagtgga actggagagc atccaggagc ggtatgtcca 4981 ggtgctgcgc tcctacctgc agaactcctc gccgcagaat ccgcaggcga ggctcagcga 5041 gctgctctcc cacataccag agatccaggc tgccgccagt ctgctgctcg agagcaagat 5101 gttctatgtg cccttcgtgc tcaactcggc gagcataagg tagcagatgc tt