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LOCUS XM_070218155 5387 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_070218155 VERSION XM_070218155.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5387 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5387 /gene="Hr4" /note="Hormone receptor 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108056780" CDS 645..5378 /gene="Hr4" /codon_start=1 /product="hormone receptor 4 isoform X2" /protein_id="XP_070074256.1" /db_xref="GeneID:108056780" /translation="MLPERVTIIPKIQKHTKSKAKSNEKAKTKKPQANTHKSKARKAT TATAKAKTTIGKQENFLFLSKFEQSAKTRKNEIMTSIGIMTLSRGPYSELDKMSLFQD LKLKRRKIDSRCSSDGESIADTSTSSPDLLAPMSPKLCDGGLGPGASSVGVGGVSLNL PLPLPMSLPLPLPLPLTSASSATAAVTVSLAAVVAAVAEGSGGGSVAGTTVVTASVAG PCVSTSSTTTAAAASSSTPSSLSSSLSSSSSSSSTNSSSSSSTSTTAGATSSTTATCP ASSSSSSNKSGGSIKQELHTEIHSSSSAISAAAASTVMSPPPAEPARSSPETPTNESG SGGATGGSGGSATGGSAINEHQNNGNGSGGSSRASPDSLEEKPSTTTTPTNGVMSSGG GAGNGGGATGSSAKLSEAGMSVIRSVKEERLLSVSSKMMAFHQQREQESKAAGHVTVL VTPSRIKSEPPPPASPSSTSSTLRERERERERERERERERDRERDISSSQQHLSSRIS ASGSPPTQLGHGQGAMGATIVQTHHLHQQLTQPLTLRKSSPPTEHLLSQSMQHLTQQQ ALHLHHLLGQQQQQQASHPQQQQQQQQQQQQQQQQQQQHSPHSLVRVKKEPNVGQRHL SPHHQQQSPHLQQQQQQQHLHQQQQQHLHQQQHHQQQQQPQALALMHPASLALRNSNR DAAILFRVKSEVHQQVAAGLPHLMQSAGGAAAAAAAAVAAQRMVCFSNARINGVKPEV IGGPLGNLRPVGGGGNGGGGLSGGGGGGGSSVQCPSPHPSSSSSSSQLSPQTPSQTPP RGTPTVIMGESCGVRTMVWGYEPPPPTVGQSVGGQQQQQQHPQQQQQQQSPHHQPQQQ QQQQHCLSSPSAGSLTPSSSGGGSVGGPLTPSSSVTPQNNEEAAQLLLSLGQTRIQDM RARPHPFRTPHALNMERLWAGDYSQLPPGQLQALNLSAQQQQWGSSNSGGGLGGGVGG GLGGRGGGLEAPHEPTDEDEQPLVCMICEDKATGLHYGIITCEGCKGFFKRTVQNRRV YTCVADGTCEITKAQRNRCQYCRFKKCIEQGMVLQAVREDRMPGGRNSGAVYNLYKVK YKKHKKTNQKQQQQAAQQQQQQQQAAAQQQHQQQQHQQQQQHQQHQQLHSPLHHHHHQ VGHQSHHPQQQHHPQLSPHHLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQAKLMDMK PMFLGPVLKPELLQAPPMHSPAQQQQQSSPHLSLSSPHQQQQQQQNHHQQQQPGGVSG AQLPPHLVNGTILKTALTNPSEIVHLRHRLDSAVSSSKDRQISYEHAVAMIQTLIDCD AMEDIATLPHFSEFLEDKSEISEKLCNIGDSIVHKLVSWTKKLPFYLEIPVEIHTKLL TDKWHEILILTTAAYQALHGKRRSGDSGSSRHSSPASTPSTLVTSPPGTPNASPAAQP LHKDDPEFVSEVNSHLSTLQTCLTTLMGQPIAMEQLKLDVGHMVDKMTQITIMFRRIK LKMEEYVCLKVYILLNKEVELESIQERYVQVLRSYLQNSSPQNPQARLSELLSHIPEI QAAASLLLESKMFYVPFVLNSASIR" misc_feature 3609..3878 /gene="Hr4" /note="DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers; Region: NR_DBD_DHR4_like; cd07168" /db_xref="CDD:143542" misc_feature order(3633..3635,3642..3644,3684..3686,3693..3695, 3741..3743,3759..3761,3789..3791,3798..3800) /gene="Hr4" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143542" misc_feature order(3663..3671,3687..3692,3696..3698,3702..3704, 3711..3713,3720..3722,3780..3785,3792..3794,3801..3803, 3834..3836,3843..3845) /gene="Hr4" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:143542" misc_feature 4584..5363 /gene="Hr4" /note="The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4; Region: NR_LBD_DHR4_like; cd06953" /db_xref="CDD:132751" misc_feature order(4674..4679,4689..4691,4791..4793,4803..4805, 4812..4814,5013..5015,5082..5084) /gene="Hr4" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:132751" misc_feature order(4704..4706,4713..4715,4725..4727,4740..4742, 4755..4760,4764..4769,4776..4781) /gene="Hr4" /note="putative coactivator recognition site [active]" /db_xref="CDD:132751" ORIGIN 1 tttatttcgt tcgcatgtac gcacgttggc cgcggagcaa catctccccg aaacaagcaa 61 caaaaaaaaa aacagaaaac agaaaaaaga aacaaacaga aaataaaaca aaaccaaagg 121 cactgaaatt aaacaacagc aacaacaaac acggcagcag ccgtcgctca gacgcggaaa 181 cttggctcga actttagttt ggtttcagtt gccaaatgga tagtggctag agtgcggcgg 241 tatcggttga atcggttgaa tcggttgaat cgtctgaatc ggttgaatcg tctgaatcgg 301 tggaatcgcc tgtatcggtt aggcacgcgc caaaaaccct tttttttaag tttcttcaag 361 ttgttagtgg tactcaaaaa acaaaacaaa aacagcatac attatacatg tgtttatgta 421 aagtataggc aagaatcgaa agccaagagt gaaaattcca gtcaaacgta aaagtgcaac 481 caacaattgg ccaagactat tgaaaaaacg aaaaaagaca gaacaaaaca gaacccccac 541 ccctaaaaaa aaacacaaac aaaaaaacca accctacaaa cccactggaa tgcatgctgc 601 cactgccact ctgctctgca gcagaaccaa aaaaagcagt ctagatgctt cccgaacgag 661 tcacaataat accaaaaatc caaaaacata ctaaatccaa agccaaatca aatgaaaaag 721 caaaaacaaa gaaaccacag gcaaacacac acaaaagcaa ggcaagaaaa gcaacgacag 781 caacagcaaa agcaaaaaca acgatcggca aacaagagaa ttttttgttt ttatcaaaat 841 ttgaacaatc ggcaaagaca agaaaaaacg aaattatgac atccatagga attatgacac 901 tgagccgtgg cccgtacagc gagctcgata aaatgagcct ttttcaagac ctcaaactca 961 aacggcggaa aatcgattcg cgatgcagca gtgacggcga gtccatagcg gacacgtcca 1021 cctcgtcgcc ggatctgctg gcgcccatgt cgccgaagct ctgcgacggc ggattgggcc 1081 caggggcatc gtcggtgggg gtggggggtg tgtccctgaa cctgcccctg ccgctgccca 1141 tgtcgctgcc cctgcccctg cccttgccac tgacttcggc ctcttcggcg acggcggcgg 1201 tcaccgtttc gctggcagcg gtggtggcgg cagtggccga gggatccggt ggaggatcgg 1261 tagccgggac gacagtggtg acggcctcgg tggcgggacc ctgcgtctcc acctcctcga 1321 cgacgacggc ggcggcggcc agctcctcga ccccctcctc gctatcgtcc tcgctatcct 1381 cctcctcctc gtcatcgtcg accaactcct ccagcagcag cagcacctcc accaccgcag 1441 gagccacctc ctccaccacg gccacctgtc cagccagcag cagcagcagt agcaataaaa 1501 gcggaggcag catcaagcag gagctccaca cggagatcca ctcctcgagc agcgcgattt 1561 cggcggcagc cgcctccacg gtgatgtcac cgccgcccgc agagccggcg agatcgagtc 1621 cagaaacgcc cacaaacgaa tcgggatcgg gaggagcaac aggaggatca ggaggatcag 1681 caactggagg atctgcaatc aatgaacacc aaaacaatgg caacggaagc gggggcagca 1741 gtcgcgcctc gcccgattcg ctggaggaga agccctcgac cacgacgacg cccacgaatg 1801 gggtgatgtc atccggagga ggagcaggaa atggaggagg agccaccgga agcagcgcca 1861 agctgagcga ggcgggaatg agtgtgatac gctccgttaa agaggagcgt ctgctcagcg 1921 tctccagcaa gatgatggcc ttccaccagc agcgggagca ggagagcaag gcggcgggac 1981 atgtgacggt tctagtgacg ccctcgagga tcaaatcgga gccaccgcca cccgcctcgc 2041 cctcctccac atccagcact ctaagggaaa gggaaaggga gagggaaagg gagagagaaa 2101 gggaaaggga acgagataga gagcgggaca tcagctcctc gcagcagcat ctgagcagca 2161 ggatctcggc cagcggttcg ccgcccactc agctgggaca cggacagggc gccatgggag 2221 ccaccatcgt ccagacgcac catctccacc agcaactcac ccagccactg actttgcgca 2281 agagcagccc gcccacggag catttgctca gccagtcgat gcagcatctc acccagcagc 2341 aggccctcca cctgcaccac ctgctcggcc agcagcagca gcagcaggcg tcgcatcccc 2401 agcagcaaca gcaacagcag caacagcaac agcagcaaca gcagcagcag cagcaacact 2461 cgccgcactc cttggtgcgc gtgaagaagg aaccgaatgt gggccagcgg cacttatcgc 2521 cccatcacca gcagcaatcg ccgcacctgc aacagcaaca gcagcagcaa cacctacacc 2581 agcagcagca gcaacaccta caccagcagc aacaccacca gcagcagcag caaccacagg 2641 cgctggccct catgcatccc gcctcgttgg cgctgaggaa cagcaaccgg gatgcggcca 2701 ttctgtttcg ggtgaagagc gaggtgcacc agcaggtggc cgccgggctg ccgcatctga 2761 tgcagtccgc cggcggagca gcggcggcag cagcggcggc agtggccgcc cagcggatgg 2821 tctgcttcag caatgcgcgg atcaacgggg tcaagccgga ggtgattggc ggaccgctgg 2881 gcaatttgcg accggtgggt ggaggtggca acggaggagg cggtttgagt ggcggcggag 2941 gaggaggggg ctcatccgtg caatgcccct cgccgcatcc ctcctcctcc tcctcctcgt 3001 cgcagctgtc gccgcagacg ccctcgcaga cgccgccccg cggcacgccc accgtcatca 3061 tgggcgagag ctgcggggtg cggaccatgg tctggggcta cgagccaccg ccgccaacgg 3121 tgggtcagtc ggtgggggga cagcagcaac agcagcagca tccccagcag caacagcagc 3181 aacagtcgcc gcaccaccag ccgcaacagc agcagcagca gcaacactgc ctctcctcgc 3241 cctccgccgg ctccctgacg ccctcctcct ccggcggcgg ctcggtgggc ggacccctga 3301 cgccctcgtc ctcggtgacg ccgcagaaca acgaggaggc cgcccagctg ctgctctccc 3361 tgggacagac gcgcatccag gacatgcggg ccaggccgca tcccttccgc acgccgcatg 3421 ccctcaacat ggaacgcctg tgggcgggcg actactcgca actgccgccc ggtcaactgc 3481 aggccctcaa tctgagtgcc cagcagcagc agtggggcag cagcaactcg ggcggcggac 3541 tgggcggcgg agtgggcgga ggactgggcg gaaggggcgg aggcctggag gcgccgcacg 3601 agccaaccga cgaggacgaa cagccgctcg tctgcatgat ctgcgaggac aaggccactg 3661 ggctgcacta cggcatcatc acgtgcgagg ggtgcaaggg cttcttcaag cggacggtgc 3721 agaaccgacg cgtctacacc tgcgtggcgg acggcacctg cgagataacc aaagcacagc 3781 gcaaccgttg tcagtattgt cgatttaaga agtgcatcga gcagggcatg gtgctgcaag 3841 ccgttcgcga ggatcgcatg ccgggcggtc gcaacagcgg cgccgtctac aatttgtaca 3901 aggtgaagta caagaagcac aagaagacca accagaagca gcagcagcag gccgcccagc 3961 agcagcagca gcagcaacag gcggcggcgc agcagcaaca ccagcagcag caacaccagc 4021 agcagcagca acatcagcag caccagcagc tgcactcgcc gctgcaccat caccaccacc 4081 aggtgggtca ccagtcgcac cacccgcagc agcagcacca cccgcagctg tcgccgcacc 4141 acctgttgtc gccgcaacag cagcaactgg ccgccgcggt ggccgcagct gcgcagcacc 4201 aacagcagca gcagcaacag caacagcagc agcaggccaa gctgatggac atgaagccca 4261 tgttcctggg accggtgctc aaaccggagc ttctccaggc accgcccatg cacagtccgg 4321 cgcagcagca gcaacagtcg tcgccgcatc tctcgctcag ctcgccgcac cagcagcagc 4381 agcagcaaca gaatcaccac cagcaacagc aaccaggtgg agtatctggg gcacaactgc 4441 cgccgcatct cgtaaacgga acgatactga aaacggcgct gaccaatccc agcgagattg 4501 tgcatctgcg ccaccgcctc gactcggcgg tgagctcctc gaaggaccgg cagatctcct 4561 acgagcacgc cgtggccatg atccaaacgc tgatcgactg cgatgccatg gaggacatcg 4621 ccacgctgcc gcacttcagc gagttcctcg aggacaagtc ggagatcagc gagaagctgt 4681 gcaacatcgg cgactcgatt gtgcacaagc tggtgtcgtg gaccaagaag ctgcccttct 4741 atctggagat ccccgtggag atacacacca agttgctgac ggacaagtgg catgagatac 4801 tcatcctgac gacggccgcc tatcaggcgt tgcatggcaa gcggcggagc ggcgacagcg 4861 gcagcagcag gcacagttca ccagcctcga cgccctcgac gctggttacc tcgccaccgg 4921 gaacgcccaa tgcctcgccc gccgcccagc cgctgcacaa ggacgatccg gagttcgtga 4981 gcgaggtgaa ctcgcatctg agcaccctgc agacctgcct gaccacgctg atgggtcaac 5041 cgattgccat ggagcagctg aagctggacg ttggccatat ggtggataag atgacccaga 5101 tcacgatcat gttccggcgc attaagctca agatggagga gtacgtttgc ctgaaggtct 5161 acatactgct gaacaaagaa gtggaactgg agagcatcca ggagcggtat gtccaggtgc 5221 tgcgctccta cctgcagaac tcctcgccgc agaatccgca ggcgaggctc agcgagctgc 5281 tctcccacat accagagatc caggctgccg ccagtctgct gctcgagagc aagatgttct 5341 atgtgccctt cgtgctcaac tcggcgagca taaggtagca gatgctt