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LOCUS XM_070218148 3917 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_070218148 VERSION XM_070218148.1 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3917 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3917 /gene="Smox" /note="Smad on X; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108055744" CDS 404..1843 /gene="Smox" /codon_start=1 /product="mothers against decapentaplegic homolog 3" /protein_id="XP_070074249.1" /db_xref="GeneID:108055744" /translation="MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIKKNS QLEELERAISTQNCQTRCVTVPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNELK PLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDYPLDNHTHQIPNN TDYNAAIIRSASLSPPQYMELGGTGSGPVSVSSSASSTPATAASASSSSSSSSAAYQQ QQQSFGQNMDSQSSVLSVGSSIPNTGTPPPGYMSEDGDPIDPNDNMNMSRLTPPADAA PVMYHEPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRN EVVEQTRRHIGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGC NLKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWI ELHLNGPLQWLDRVLTQMGSPRLPCSSMS" misc_feature 422..793 /gene="Smox" /note="N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs; Region: MH1_R-SMAD; cd10488" /db_xref="CDD:199812" misc_feature order(494..496,506..508,515..517,605..610,617..631, 638..640,695..697) /gene="Smox" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:199812" misc_feature order(587..589,722..724,758..760,773..775) /gene="Smox" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:199812" misc_feature 1235..1807 /gene="Smox" /note="C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3; Region: MH2_SMAD_2_3; cd10985" /db_xref="CDD:199826" misc_feature order(1286..1288,1301..1306,1310..1312,1343..1357, 1367..1369,1379..1381,1388..1390,1394..1399,1415..1420, 1424..1432,1439..1441,1646..1648,1655..1657,1664..1666, 1676..1678,1682..1684,1694..1702,1715..1717,1721..1723, 1733..1735,1748..1750,1754..1756,1760..1762,1766..1768, 1775..1780,1784..1789,1796..1801) /gene="Smox" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:199826" polyA_site 3917 /gene="Smox" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acatgaacaa aaagcgtctg caagcgcaga catttgacct tgttggggac aacaacaaaa 61 agcataacaa caatagcaac ccacgcagac agatttgcaa ttggcgattg gaaatcaaaa 121 ttgaattcga ttcctgaaga aatgtgaatc tgaatctgag gcaaaattga atagattacg 181 cacacacgct caggcaatta tcacaaacat cgtcatcagg gtcgggcttt tatcagatcc 241 agccgctcac acacacacac acatcacata tacatatcag aaatacacca gcgggaagca 301 ggagcagcgt tccagttaca gttacagttc cagtattcca ggcgatcaag aggagtagca 361 aagcggagga gaaagaggag cagaaacccc tgaagaccct gagatgttgc cattcacccc 421 gcaggtggtc aagcgtttgt tagcactcaa aaagggcaac gaggacaaca gcgtcgaggg 481 caagtggtcg gagaaggcgg tcaagaatct ggtcaagaag atcaagaaga actcgcagct 541 ggaggagctc gagcgggcca tctccacgca gaactgccag acgaggtgcg tgacggtgcc 601 gcgcagcaag ccagctcccg ccggcgagca tctgcgcaag ggtctgccgc acgtcatcta 661 ctgccgtttg tggcgctggc cggatctcca gtcgcagaat gaactgaagc ccctcgacca 721 ctgcgagtac gccttccatc tgcgcaagga ggagatctgc atcaatccct atcactacaa 781 gaagatcgag ttgtccatcc tggtgcccaa gtcgctgccc actccgcccg actccattgt 841 cgactatccg ctggacaacc acacgcacca gatacccaac aacaccgact acaatgcggc 901 catcattcgc agcgcctcgt tgagtccgcc gcagtacatg gaattgggcg gtaccggcag 961 cggtcccgtt tccgtatcct cctcggccag ctcgacgccc gcaactgccg cctccgcctc 1021 gtcgtcctcc tcctcctcgt ccgccgccta tcaacagcaa cagcagtcct ttggccaaaa 1081 catggactcc cagtcgagtg tgctcagtgt gggcagcagc attcccaaca ccggcacccc 1141 gccgcccggc tacatgagcg aggatggcga ccccatcgat cccaacgaca acatgaacat 1201 gtcgcgcctg acgccccccg ccgatgcagc cccggtgatg taccacgagc cggccttctg 1261 gtgctccatc tcctactacg agctgaatac gcgcgtcggc gagaccttcc acgcctcgca 1321 gccctcgatc acggtggacg gcttcaccga tccctccaac tcggagcgct tctgcctcgg 1381 cctgctctcc aatgtgaatc gcaacgaggt cgtcgagcag acgcgtcgcc acatcggcaa 1441 gggcgtacgg ctctactata ttggcggcga ggtctttgcc gaatgcctca gcgactcgtc 1501 catctttgtc cagagcccca attgcaatca gcggtacggt tggcatccgg ccaccgtgtg 1561 caagataccg cctgggtgca atctgaagat cttcaacaac caggagttcg ccgccctgct 1621 gtcgcagtcc gtgtcgcagg gattcgaggc cgtctaccag ctgacgcgca tgtgcaccat 1681 ccgcatgtcg ttcgtcaagg gctggggcgc cgagtatcgc cgccagacgg tcacctcgac 1741 gccctgctgg atcgagctgc accttaacgg gccgctccag tggctggacc gcgtgctcac 1801 gcagatggga tcgccgcggc tgccgtgcag ttccatgtcg taagcgaagg ttccggtttt 1861 caatttcccg gagcttaaaa ccagagaacc tagtaacact gatgaacaga agaggaatag 1921 aatggagtat cctcaagaat tcgcggtacc attggccaca tgaacagtga aatccaagaa 1981 accaaaaaaa ctagatgtac atcgatgtta aagctaatca atggtcagtg ttgctggtta 2041 gaagctccac ggggaaagca aaatgagaat cggaatgggt ttcagcgaga aaaccaagaa 2101 caattctgag agcacatatg aaataagttc aggcaaatta tatacgagta catactggag 2161 caaaatgaaa acaaatggta gatgcaagtc agatacagat aaagataccg atagagatat 2221 atctatatac aaagagcaca cacttacatg tgggatatat atctttacaa gcatatatga 2281 gagagaacat gtatttggcg ttaaaagttt aggactatat attgtgtagg tggaaacgta 2341 cgtggagaat ggcagttttc gataaggagc aacaattttt ttaaaaaagt tttacataca 2401 aaataaaaga gagaaaataa ccaaaccgac caggaacaca caagcccctt ccgaaagaag 2461 cccccagaat ctgtgtgcgt agagttggta gcgctagaag cgagcaagtc aaaattcttt 2521 gagaaagaag caaaacaatt atatcggtga tttggaacaa aaatggatga gcaaaacagg 2581 aactgggatt tatcaagctt gaagcttaca cacacagaca cacacacaca cactctacca 2641 tacattgcaa atgtacataa gaccaaatat gatgaaatta ttcacgcagg acctccactt 2701 gatcgagtat gggattacaa gtacatatat ctatgtatat ccgtttgatg atggttgtta 2761 aacgtttcga ttttcgctta gtacgtgtgt gttacaaaaa tttgccaact cttaaaatgc 2821 agtcagctct tgttagttgt aatgtccgta aaatgcgatc atatatccta tatgtaaagc 2881 acttgcccaa caaaatttta atgccgcaaa ccaagtcagg cccgtctgag gacccgttat 2941 gttcagaaat gcatttattg tgtaccaaac gagagagaga ttcatatttc tcatcgcccc 3001 tcggactcga accggtagct caaccaatat gcaatatggt ttgccggcgt tgaccggatt 3061 ttgcttggca agtgcgcgtt tttcttgggt ctagatctta agtctataaa tgtaacgaaa 3121 ttcgctagct tatcttaaaa tctaaagagc ctaaacctgt ttaagttcga gttctatttg 3181 gttttacttt tgcagattat tttaatcctc cttttttttt cgtctttcgc tgttaaaacc 3241 aaaaataact gtaccgccca gtgttgaaaa gagcatagtg cgcgacagcc agtgttggct 3301 agcgcacttg cccgctgacc acggcgtagc tttaatttaa gttttgtcta ttgtttcccc 3361 ccctttgttg cttttaagtt tcgcacgtag taatcctgat tggcaatcaa tcgaataaac 3421 gaccgcgaac gagattttgt tttgttaatt ggctctaaat acggttctga accaccccac 3481 tggctttgaa ttaaacaatt gtttttgtat ttccggctaa acccgctaat aatgtaatgt 3541 aatccttaag ttatgcctaa cgaaacaaag caaagcaaag aaggcgaaca tgcgcagcaa 3601 cagtcaacag tcctgggact ccgatcgaca ggatcgtgat cacaaccgca gaccagcaac 3661 cccctacccg taactttatg aagtataaat acaaatatat acatatatat atatctaata 3721 tgcaagcatg cagataaaga caaacagaat tcgtatatac aaataaactc ttatattgaa 3781 tggaaagcgc atctcagatg ttgtggattg gatttgagca aataggggaa aggcttgcag 3841 ttcttaatcg gatattatta taaaataatt taattatttt gtagtttact ttttaataaa 3901 tgtttatttt accttaa