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LOCUS XM_059368364 3139 bp mRNA linear INV 02-SEP-2023 (LOC106082942), transcript variant X4, mRNA. ACCESSION XM_059368364 VERSION XM_059368364.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3139 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3139 /gene="LOC106082942" /note="homeobox protein extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082942" CDS 154..1287 /gene="LOC106082942" /codon_start=1 /product="homeobox protein extradenticle isoform X1" /protein_id="XP_059224347.1" /db_xref="GeneID:106082942" /translation="MEDPNRMMAHTGGMMAPQGYGMPGQDDGQNPGNENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQVGSSLSIDGADNAIEHSDYRAKL AQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQ MQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELA RKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTP MMSPAPPQDSMGYSMGSGGYDQQQPYDNSMGGYDPTLHQDLSP" polyA_site 3139 /gene="LOC106082942" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtaataataa gcaaagaaaa cttaaagact attaataagc caaaaaaacg gataaataaa 61 tcaagtgtgt gaaaattaat ctaaaagaaa ccgtgttttg ctgttgtccc gtttctcgat 121 tatcaccgcg attaagtgaa caacagcatt aacatggagg accccaatcg gatgatggcc 181 catacgggtg gtatgatggc cccacaaggt tatggtatgc ctggacagga tgatggccaa 241 aatcccggca atgaaaatga ggtgcgcaaa caaaaggata ttggtgaaat tctacaacag 301 attatgagta tttcggagca gtcattagat gaggcacaag ctcgaaaaca tacattaaat 361 tgtcatcgca tgaaaccggc tttgttttca gtgctgtgtg aaattaagga aaaaaccgtc 421 ctctccattc gcaataccca agaggaggaa cctccagatc cacaattgat gcgtttggac 481 aacatgctca tcgccgaggg tgttgctggc cccgaaaaag gtggtggtgg ggctgctgct 541 gcttcggcgg ctgcagctag tcaagtaggc tcttcactct caatagatgg cgccgacaat 601 gccattgagc attcagacta tcgtgccaaa ttagcacaga ttcgccagat ctaccatcag 661 gaattggaga aatatgaaca ggcgtgcaat gaattcacca cacacgttat gaatctgttg 721 cgtgaacaga gtcgtacaag gcccattact cccaaagaga ttgagcgtat ggtacaaatt 781 atccacaaga aattcagttc cattcaaatg caattgaaac agtcaacctg tgaggccgtc 841 atgattttgc gttctcggtt cctagacgca cgtcgcaaac gtcgtaactt tagcaaacag 901 gcatcagaaa tactcaacga gtatttctat agtcacttga gtaatcccta tccatccgag 961 gaggccaaag aggaattggc acgtaaatgt ggcataactg tctcgcaagt ttcgaattgg 1021 tttggcaata aacgcattcg ctataagaag aacataggca aggcccaaga ggaagcaaat 1081 ctgtatgcag ctaagaaggc agccggtgca tctccctatt ccatggcagg acctcccagc 1141 ggcacaacga caccgatgat gtcaccagca cctccccaag actccatggg ctattccatg 1201 ggctcgggtg gctatgatca acagcagccg tatgacaata gcatgggcgg ctacgatccc 1261 accctgcacc aggatcttag cccttgagga cgttattttg ataacaaata ctagagagta 1321 cttcaaatag ttctcacaca aaccattttc taaactaacg cactttgttt tttagtattt 1381 ttttttaaca ttatttctaa aacttcttta cttaaaattc gtgctttttt aaagtgtcgt 1441 aattattatt atactttagt aggtgtatta tttttcttaa ataattattg tttctcttac 1501 ttttattccc cctttcccta gccgccccct cattcacttt ttatttgggt ttagtttata 1561 gcaattagta tttaagtgta atggaagatt agcttaaaag gatccttgaa ggttcttggt 1621 ccttgagctc ttcttctaaa actgcaatag ttttcttatt tttgcttttt ttttgctgct 1681 aagttaaaat tttttgcgtt tttcaatttt ctaatagata agaagtaaag gccgcatata 1741 cgtaatgtat tttccatttt tttggtattt actaatttta gatttagagt ctataacgaa 1801 acaaaaccaa accaagtata cttgagaaat tttgaaaccg tatgtatact actaaaaagc 1861 taaaaaagca taattttgag ctattcgaat acaaaatcaa agtaatccac aaacagcaac 1921 acacacacac acagttatac gagagaaaaa aaaaagcaaa aatcagaaaa cgttaaactt 1981 ttgaaatgta tacgaaataa attaaattta attttcattt tgcaaaacaa aattaaataa 2041 atgcaaaaat gtaacaacaa cagcaagtga ataccacatc tgcaacacat atatttatac 2101 gaaggtatcc ctttcccttt gttcacatga agaaaaggca gccgaaccca acagatagat 2161 taccacagtt taccctgccc acaacactac attcaatgta tactgaagaa caatatacga 2221 gcatactaaa aagccgagat caaattctca ttaaatgcaa aatcgaaaca aaatacttaa 2281 agaaagtaaa aagtgtatac caagtcttga actataaata ttatatacaa atacaaaaat 2341 aatactaaaa aaaggaaata aaataattta cttgatatag tggtaaactt ctatatataa 2401 aactacaata ttgatgcaat attttttaga ttaaaaataa agctaaggct ctacttcccc 2461 accctgcaat ccacaatgaa aacataaaat tcaagcaaat cttcaaggaa aatcataaga 2521 aaaaaagttt aaggccctac tctccccctt ctctccaaat agcatccata ttaagtttgt 2581 tctacttaag ttgtatatta aaatgttaac ataaaaatta acaaaaagca aattcaagta 2641 tacgagcaaa tgaaaatatt taaataataa aaacgtttct tttatagtaa cataccatgt 2701 actactaaca tcgaacaaaa agcgactagt ggcaatttcg tttgagttta agttaaaaaa 2761 aaataaattt tattcccaaa ctactcataa caataaccgt gaacaaataa caaatcaatc 2821 acttgatact cccccctaga attcaaaata gatttgagat tcaatcattt caattagtca 2881 acaactaaaa cctatataga agcaagcatc aatcacaacc gaagaaacca tggaagtatt 2941 tcccaaaaat ccagtttgaa atatttcctc ttaatgtctg tcatctccct gaatatttaa 3001 aaattcaaga aagaaataag aagttgaagt ttaagaccta taaataaata aatacgatta 3061 ttttaaaaat actatacaaa caacaaaaaa ccgaaaactt aataaaaaga atgtggcaaa 3121 aaaaatatac aaaatataa