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LOCUS XM_059368363 4721 bp mRNA linear INV 02-SEP-2023 (LOC106082942), transcript variant X3, mRNA. ACCESSION XM_059368363 VERSION XM_059368363.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4721 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4721 /gene="LOC106082942" /note="homeobox protein extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082942" CDS 1736..2869 /gene="LOC106082942" /codon_start=1 /product="homeobox protein extradenticle isoform X1" /protein_id="XP_059224346.1" /db_xref="GeneID:106082942" /translation="MEDPNRMMAHTGGMMAPQGYGMPGQDDGQNPGNENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQVGSSLSIDGADNAIEHSDYRAKL AQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQ MQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELA RKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTP MMSPAPPQDSMGYSMGSGGYDQQQPYDNSMGGYDPTLHQDLSP" polyA_site 4721 /gene="LOC106082942" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actcccttac aatataccac agcttgccaa ttcacattga ttcaagtgta ccagccaaat 61 attctactta tgttcgttga cttcactgtt aatttctaga ttcagttggc tggatagtgg 121 ggtccatgga acgaatccaa tcacggccct gatctgtcgc tactattgta tcaccattga 181 ctcaaaattg tctaagcgag cgagtctgta atggcaggcc attcttacct atcttagctg 241 aacccattcg aaagttagca tgcttttgaa cggacagatt atcccttgtc ttcacaaatc 301 aacaaagcag ctaccgatat gtactaccca attagataat tttttttggt ttatcggtca 361 gggaaatgcc taaattgcag tttgtttatc tggcaatggg cttaagagac gagactagaa 421 tgacttagaa cctcaagccg agcgaaaaca tatatttata tcttatggga ttgatatttg 481 caggtgttat aaaggaaatt actaaattag tatagtaaat gaattttttt ctcgacatgg 541 tcttataaat ttttggcaat gcctgtaggt taggtaagtt tagacaattt ttaagtccat 601 tgtgatagca cagtagcgaa agaacaaggc ttctggcggg aatcgaaccc acgatccctg 661 cactgttaat ccaagcacgc ttcatactcg gctaccgggg cgcccatggt aatgccttta 721 tttgtaaaag ttttaaaaac gtattcgatt aaaactccat tagatatcct ttgcagctcc 781 cgtagaacat ttttttagca ctcattttca aggttctttg ctttccacca aagagaaagt 841 tgctttctct ttttttttgt tttccataat tattatcgcc acttgaaata cgcttgaagt 901 tgaagtcgaa aggatctcgg tcgtctttta agtgtcaaaa gacacgcgtc atcctcatat 961 gaggcctata ttatgctaca tagaatatga agaacaatgg gcgaaatgat acggcacatt 1021 tggcttgtgt aaacaaatcc tttagattta caataaacat aaatgtcgaa catgacctta 1081 acattaacag ccccgagatt agttagttaa tctttgacag agggatttaa gtttactact 1141 gcggctagca acagcggcgg ccgcaggtag ggtgtgcagg tcaatggcga tgtgtatgaa 1201 ccgaacagag cacagagaaa ctcgatttat atccttttct ttgttaaaac tcaaggaatt 1261 gagtgtgtca aaatcaacgc aaaaagccaa aattcaaatc acgacctgtt gtagacataa 1321 catactacct acatacacat atatgtacaa gactgacgga caaagaagac agtcagctat 1381 gatgccattg ttgcgaagat tgtattaagc tctttatatc acagctctca tgaggtatgc 1441 ttgatatttg acgttcgttg ttctctcaca atcgtctctg tgtatctgca tgcccctgag 1501 ttttgtgttt gccatgatgc ttgcgcttga ctgtttgttg tttggcgctg ttgtcgattg 1561 ggttttggtg ttgttcctgc ctggccgtgt agcatttttg tcaccacagt ttattttgtg 1621 ccattgacgg ggttggacgt gctgctagcg tgagcgtcta ttgtgtgaat gaccgtgttt 1681 tgctgttgtc ccgtttctcg attatcaccg cgattaagtg aacaacagca ttaacatgga 1741 ggaccccaat cggatgatgg cccatacggg tggtatgatg gccccacaag gttatggtat 1801 gcctggacag gatgatggcc aaaatcccgg caatgaaaat gaggtgcgca aacaaaagga 1861 tattggtgaa attctacaac agattatgag tatttcggag cagtcattag atgaggcaca 1921 agctcgaaaa catacattaa attgtcatcg catgaaaccg gctttgtttt cagtgctgtg 1981 tgaaattaag gaaaaaaccg tcctctccat tcgcaatacc caagaggagg aacctccaga 2041 tccacaattg atgcgtttgg acaacatgct catcgccgag ggtgttgctg gccccgaaaa 2101 aggtggtggt ggggctgctg ctgcttcggc ggctgcagct agtcaagtag gctcttcact 2161 ctcaatagat ggcgccgaca atgccattga gcattcagac tatcgtgcca aattagcaca 2221 gattcgccag atctaccatc aggaattgga gaaatatgaa caggcgtgca atgaattcac 2281 cacacacgtt atgaatctgt tgcgtgaaca gagtcgtaca aggcccatta ctcccaaaga 2341 gattgagcgt atggtacaaa ttatccacaa gaaattcagt tccattcaaa tgcaattgaa 2401 acagtcaacc tgtgaggccg tcatgatttt gcgttctcgg ttcctagacg cacgtcgcaa 2461 acgtcgtaac tttagcaaac aggcatcaga aatactcaac gagtatttct atagtcactt 2521 gagtaatccc tatccatccg aggaggccaa agaggaattg gcacgtaaat gtggcataac 2581 tgtctcgcaa gtttcgaatt ggtttggcaa taaacgcatt cgctataaga agaacatagg 2641 caaggcccaa gaggaagcaa atctgtatgc agctaagaag gcagccggtg catctcccta 2701 ttccatggca ggacctccca gcggcacaac gacaccgatg atgtcaccag cacctcccca 2761 agactccatg ggctattcca tgggctcggg tggctatgat caacagcagc cgtatgacaa 2821 tagcatgggc ggctacgatc ccaccctgca ccaggatctt agcccttgag gacgttattt 2881 tgataacaaa tactagagag tacttcaaat agttctcaca caaaccattt tctaaactaa 2941 cgcactttgt tttttagtat ttttttttaa cattatttct aaaacttctt tacttaaaat 3001 tcgtgctttt ttaaagtgtc gtaattatta ttatacttta gtaggtgtat tatttttctt 3061 aaataattat tgtttctctt acttttattc cccctttccc tagccgcccc ctcattcact 3121 ttttatttgg gtttagttta tagcaattag tatttaagtg taatggaaga ttagcttaaa 3181 aggatccttg aaggttcttg gtccttgagc tcttcttcta aaactgcaat agttttctta 3241 tttttgcttt ttttttgctg ctaagttaaa attttttgcg tttttcaatt ttctaataga 3301 taagaagtaa aggccgcata tacgtaatgt attttccatt tttttggtat ttactaattt 3361 tagatttaga gtctataacg aaacaaaacc aaaccaagta tacttgagaa attttgaaac 3421 cgtatgtata ctactaaaaa gctaaaaaag cataattttg agctattcga atacaaaatc 3481 aaagtaatcc acaaacagca acacacacac acacagttat acgagagaaa aaaaaaagca 3541 aaaatcagaa aacgttaaac ttttgaaatg tatacgaaat aaattaaatt taattttcat 3601 tttgcaaaac aaaattaaat aaatgcaaaa atgtaacaac aacagcaagt gaataccaca 3661 tctgcaacac atatatttat acgaaggtat ccctttccct ttgttcacat gaagaaaagg 3721 cagccgaacc caacagatag attaccacag tttaccctgc ccacaacact acattcaatg 3781 tatactgaag aacaatatac gagcatacta aaaagccgag atcaaattct cattaaatgc 3841 aaaatcgaaa caaaatactt aaagaaagta aaaagtgtat accaagtctt gaactataaa 3901 tattatatac aaatacaaaa ataatactaa aaaaaggaaa taaaataatt tacttgatat 3961 agtggtaaac ttctatatat aaaactacaa tattgatgca atatttttta gattaaaaat 4021 aaagctaagg ctctacttcc ccaccctgca atccacaatg aaaacataaa attcaagcaa 4081 atcttcaagg aaaatcataa gaaaaaaagt ttaaggccct actctccccc ttctctccaa 4141 atagcatcca tattaagttt gttctactta agttgtatat taaaatgtta acataaaaat 4201 taacaaaaag caaattcaag tatacgagca aatgaaaata tttaaataat aaaaacgttt 4261 cttttatagt aacataccat gtactactaa catcgaacaa aaagcgacta gtggcaattt 4321 cgtttgagtt taagttaaaa aaaaataaat tttattccca aactactcat aacaataacc 4381 gtgaacaaat aacaaatcaa tcacttgata ctccccccta gaattcaaaa tagatttgag 4441 attcaatcat ttcaattagt caacaactaa aacctatata gaagcaagca tcaatcacaa 4501 ccgaagaaac catggaagta tttcccaaaa atccagtttg aaatatttcc tcttaatgtc 4561 tgtcatctcc ctgaatattt aaaaattcaa gaaagaaata agaagttgaa gtttaagacc 4621 tataaataaa taaatacgat tattttaaaa atactataca aacaacaaaa aaccgaaaac 4681 ttaataaaaa gaatgtggca aaaaaaatat acaaaatata a