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LOCUS XM_059368362 3153 bp mRNA linear INV 02-SEP-2023 (LOC106082942), transcript variant X2, mRNA. ACCESSION XM_059368362 VERSION XM_059368362.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3153 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3153 /gene="LOC106082942" /note="homeobox protein extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082942" CDS 168..1301 /gene="LOC106082942" /codon_start=1 /product="homeobox protein extradenticle isoform X1" /protein_id="XP_059224345.1" /db_xref="GeneID:106082942" /translation="MEDPNRMMAHTGGMMAPQGYGMPGQDDGQNPGNENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQVGSSLSIDGADNAIEHSDYRAKL AQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQ MQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELA RKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTP MMSPAPPQDSMGYSMGSGGYDQQQPYDNSMGGYDPTLHQDLSP" polyA_site 3153 /gene="LOC106082942" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aataaattga cgcgtttaaa gactttagct taaaattgtg gtaataataa gcaaagaaaa 61 cttaaagact attaataagc caaaaaaacg gataaataaa tcaaccgtgt tttgctgttg 121 tcccgtttct cgattatcac cgcgattaag tgaacaacag cattaacatg gaggacccca 181 atcggatgat ggcccatacg ggtggtatga tggccccaca aggttatggt atgcctggac 241 aggatgatgg ccaaaatccc ggcaatgaaa atgaggtgcg caaacaaaag gatattggtg 301 aaattctaca acagattatg agtatttcgg agcagtcatt agatgaggca caagctcgaa 361 aacatacatt aaattgtcat cgcatgaaac cggctttgtt ttcagtgctg tgtgaaatta 421 aggaaaaaac cgtcctctcc attcgcaata cccaagagga ggaacctcca gatccacaat 481 tgatgcgttt ggacaacatg ctcatcgccg agggtgttgc tggccccgaa aaaggtggtg 541 gtggggctgc tgctgcttcg gcggctgcag ctagtcaagt aggctcttca ctctcaatag 601 atggcgccga caatgccatt gagcattcag actatcgtgc caaattagca cagattcgcc 661 agatctacca tcaggaattg gagaaatatg aacaggcgtg caatgaattc accacacacg 721 ttatgaatct gttgcgtgaa cagagtcgta caaggcccat tactcccaaa gagattgagc 781 gtatggtaca aattatccac aagaaattca gttccattca aatgcaattg aaacagtcaa 841 cctgtgaggc cgtcatgatt ttgcgttctc ggttcctaga cgcacgtcgc aaacgtcgta 901 actttagcaa acaggcatca gaaatactca acgagtattt ctatagtcac ttgagtaatc 961 cctatccatc cgaggaggcc aaagaggaat tggcacgtaa atgtggcata actgtctcgc 1021 aagtttcgaa ttggtttggc aataaacgca ttcgctataa gaagaacata ggcaaggccc 1081 aagaggaagc aaatctgtat gcagctaaga aggcagccgg tgcatctccc tattccatgg 1141 caggacctcc cagcggcaca acgacaccga tgatgtcacc agcacctccc caagactcca 1201 tgggctattc catgggctcg ggtggctatg atcaacagca gccgtatgac aatagcatgg 1261 gcggctacga tcccaccctg caccaggatc ttagcccttg aggacgttat tttgataaca 1321 aatactagag agtacttcaa atagttctca cacaaaccat tttctaaact aacgcacttt 1381 gttttttagt attttttttt aacattattt ctaaaacttc tttacttaaa attcgtgctt 1441 ttttaaagtg tcgtaattat tattatactt tagtaggtgt attatttttc ttaaataatt 1501 attgtttctc ttacttttat tccccctttc cctagccgcc ccctcattca ctttttattt 1561 gggtttagtt tatagcaatt agtatttaag tgtaatggaa gattagctta aaaggatcct 1621 tgaaggttct tggtccttga gctcttcttc taaaactgca atagttttct tatttttgct 1681 ttttttttgc tgctaagtta aaattttttg cgtttttcaa ttttctaata gataagaagt 1741 aaaggccgca tatacgtaat gtattttcca tttttttggt atttactaat tttagattta 1801 gagtctataa cgaaacaaaa ccaaaccaag tatacttgag aaattttgaa accgtatgta 1861 tactactaaa aagctaaaaa agcataattt tgagctattc gaatacaaaa tcaaagtaat 1921 ccacaaacag caacacacac acacacagtt atacgagaga aaaaaaaaag caaaaatcag 1981 aaaacgttaa acttttgaaa tgtatacgaa ataaattaaa tttaattttc attttgcaaa 2041 acaaaattaa ataaatgcaa aaatgtaaca acaacagcaa gtgaatacca catctgcaac 2101 acatatattt atacgaaggt atccctttcc ctttgttcac atgaagaaaa ggcagccgaa 2161 cccaacagat agattaccac agtttaccct gcccacaaca ctacattcaa tgtatactga 2221 agaacaatat acgagcatac taaaaagccg agatcaaatt ctcattaaat gcaaaatcga 2281 aacaaaatac ttaaagaaag taaaaagtgt ataccaagtc ttgaactata aatattatat 2341 acaaatacaa aaataatact aaaaaaagga aataaaataa tttacttgat atagtggtaa 2401 acttctatat ataaaactac aatattgatg caatattttt tagattaaaa ataaagctaa 2461 ggctctactt ccccaccctg caatccacaa tgaaaacata aaattcaagc aaatcttcaa 2521 ggaaaatcat aagaaaaaaa gtttaaggcc ctactctccc ccttctctcc aaatagcatc 2581 catattaagt ttgttctact taagttgtat attaaaatgt taacataaaa attaacaaaa 2641 agcaaattca agtatacgag caaatgaaaa tatttaaata ataaaaacgt ttcttttata 2701 gtaacatacc atgtactact aacatcgaac aaaaagcgac tagtggcaat ttcgtttgag 2761 tttaagttaa aaaaaaataa attttattcc caaactactc ataacaataa ccgtgaacaa 2821 ataacaaatc aatcacttga tactcccccc tagaattcaa aatagatttg agattcaatc 2881 atttcaatta gtcaacaact aaaacctata tagaagcaag catcaatcac aaccgaagaa 2941 accatggaag tatttcccaa aaatccagtt tgaaatattt cctcttaatg tctgtcatct 3001 ccctgaatat ttaaaaattc aagaaagaaa taagaagttg aagtttaaga cctataaata 3061 aataaatacg attattttaa aaatactata caaacaacaa aaaaccgaaa acttaataaa 3121 aagaatgtgg caaaaaaaat atacaaaata taa