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LOCUS XM_059368361 3158 bp mRNA linear INV 02-SEP-2023 (LOC106082942), transcript variant X1, mRNA. ACCESSION XM_059368361 VERSION XM_059368361.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3158 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3158 /gene="LOC106082942" /note="homeobox protein extradenticle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082942" CDS 173..1306 /gene="LOC106082942" /codon_start=1 /product="homeobox protein extradenticle isoform X1" /protein_id="XP_059224344.1" /db_xref="GeneID:106082942" /translation="MEDPNRMMAHTGGMMAPQGYGMPGQDDGQNPGNENEVRKQKDIG EILQQIMSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEPPD PQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQVGSSLSIDGADNAIEHSDYRAKL AQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQ MQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELA RKCGITVSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMAGPPSGTTTP MMSPAPPQDSMGYSMGSGGYDQQQPYDNSMGGYDPTLHQDLSP" polyA_site 3158 /gene="LOC106082942" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atttgtcgcc atatttgtat ttaacgacga aggagataca gaaaaaagag caaaaaaaaa 61 aactaaaaaa ataaattgac gcgtttaaag actttagctt aaaattgtgc cgtgttttgc 121 tgttgtcccg tttctcgatt atcaccgcga ttaagtgaac aacagcatta acatggagga 181 ccccaatcgg atgatggccc atacgggtgg tatgatggcc ccacaaggtt atggtatgcc 241 tggacaggat gatggccaaa atcccggcaa tgaaaatgag gtgcgcaaac aaaaggatat 301 tggtgaaatt ctacaacaga ttatgagtat ttcggagcag tcattagatg aggcacaagc 361 tcgaaaacat acattaaatt gtcatcgcat gaaaccggct ttgttttcag tgctgtgtga 421 aattaaggaa aaaaccgtcc tctccattcg caatacccaa gaggaggaac ctccagatcc 481 acaattgatg cgtttggaca acatgctcat cgccgagggt gttgctggcc ccgaaaaagg 541 tggtggtggg gctgctgctg cttcggcggc tgcagctagt caagtaggct cttcactctc 601 aatagatggc gccgacaatg ccattgagca ttcagactat cgtgccaaat tagcacagat 661 tcgccagatc taccatcagg aattggagaa atatgaacag gcgtgcaatg aattcaccac 721 acacgttatg aatctgttgc gtgaacagag tcgtacaagg cccattactc ccaaagagat 781 tgagcgtatg gtacaaatta tccacaagaa attcagttcc attcaaatgc aattgaaaca 841 gtcaacctgt gaggccgtca tgattttgcg ttctcggttc ctagacgcac gtcgcaaacg 901 tcgtaacttt agcaaacagg catcagaaat actcaacgag tatttctata gtcacttgag 961 taatccctat ccatccgagg aggccaaaga ggaattggca cgtaaatgtg gcataactgt 1021 ctcgcaagtt tcgaattggt ttggcaataa acgcattcgc tataagaaga acataggcaa 1081 ggcccaagag gaagcaaatc tgtatgcagc taagaaggca gccggtgcat ctccctattc 1141 catggcagga cctcccagcg gcacaacgac accgatgatg tcaccagcac ctccccaaga 1201 ctccatgggc tattccatgg gctcgggtgg ctatgatcaa cagcagccgt atgacaatag 1261 catgggcggc tacgatccca ccctgcacca ggatcttagc ccttgaggac gttattttga 1321 taacaaatac tagagagtac ttcaaatagt tctcacacaa accattttct aaactaacgc 1381 actttgtttt ttagtatttt tttttaacat tatttctaaa acttctttac ttaaaattcg 1441 tgctttttta aagtgtcgta attattatta tactttagta ggtgtattat ttttcttaaa 1501 taattattgt ttctcttact tttattcccc ctttccctag ccgccccctc attcactttt 1561 tatttgggtt tagtttatag caattagtat ttaagtgtaa tggaagatta gcttaaaagg 1621 atccttgaag gttcttggtc cttgagctct tcttctaaaa ctgcaatagt tttcttattt 1681 ttgctttttt tttgctgcta agttaaaatt ttttgcgttt ttcaattttc taatagataa 1741 gaagtaaagg ccgcatatac gtaatgtatt ttccattttt ttggtattta ctaattttag 1801 atttagagtc tataacgaaa caaaaccaaa ccaagtatac ttgagaaatt ttgaaaccgt 1861 atgtatacta ctaaaaagct aaaaaagcat aattttgagc tattcgaata caaaatcaaa 1921 gtaatccaca aacagcaaca cacacacaca cagttatacg agagaaaaaa aaaagcaaaa 1981 atcagaaaac gttaaacttt tgaaatgtat acgaaataaa ttaaatttaa ttttcatttt 2041 gcaaaacaaa attaaataaa tgcaaaaatg taacaacaac agcaagtgaa taccacatct 2101 gcaacacata tatttatacg aaggtatccc tttccctttg ttcacatgaa gaaaaggcag 2161 ccgaacccaa cagatagatt accacagttt accctgccca caacactaca ttcaatgtat 2221 actgaagaac aatatacgag catactaaaa agccgagatc aaattctcat taaatgcaaa 2281 atcgaaacaa aatacttaaa gaaagtaaaa agtgtatacc aagtcttgaa ctataaatat 2341 tatatacaaa tacaaaaata atactaaaaa aaggaaataa aataatttac ttgatatagt 2401 ggtaaacttc tatatataaa actacaatat tgatgcaata ttttttagat taaaaataaa 2461 gctaaggctc tacttcccca ccctgcaatc cacaatgaaa acataaaatt caagcaaatc 2521 ttcaaggaaa atcataagaa aaaaagttta aggccctact ctcccccttc tctccaaata 2581 gcatccatat taagtttgtt ctacttaagt tgtatattaa aatgttaaca taaaaattaa 2641 caaaaagcaa attcaagtat acgagcaaat gaaaatattt aaataataaa aacgtttctt 2701 ttatagtaac ataccatgta ctactaacat cgaacaaaaa gcgactagtg gcaatttcgt 2761 ttgagtttaa gttaaaaaaa aataaatttt attcccaaac tactcataac aataaccgtg 2821 aacaaataac aaatcaatca cttgatactc ccccctagaa ttcaaaatag atttgagatt 2881 caatcatttc aattagtcaa caactaaaac ctatatagaa gcaagcatca atcacaaccg 2941 aagaaaccat ggaagtattt cccaaaaatc cagtttgaaa tatttcctct taatgtctgt 3001 catctccctg aatatttaaa aattcaagaa agaaataaga agttgaagtt taagacctat 3061 aaataaataa atacgattat tttaaaaata ctatacaaac aacaaaaaac cgaaaactta 3121 ataaaaagaa tgtggcaaaa aaaatataca aaatataa