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LOCUS XM_059368282 8405 bp mRNA linear INV 02-SEP-2023 (LOC106087029), transcript variant X2, mRNA. ACCESSION XM_059368282 VERSION XM_059368282.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8405 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..8405 /gene="LOC106087029" /note="uncharacterized LOC106087029; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:106087029" CDS 818..6658 /gene="LOC106087029" /codon_start=1 /product="uncharacterized protein LOC106087029 isoform X2" /protein_id="XP_059224265.1" /db_xref="GeneID:106087029" /translation="MQSNTSRATLSAQSSGTPSASTISSSGKQQVVELSGYVIILVEN VDGKIKLYGSPPDRDNLEVGDEILEVNGLTLDNISRTEVIRHIHDCIKSCTICLRVRK KNDSRLAWDIGNSVQDAFVIAVEEHARERLQRLAALNRVTPVDITQLSKKLQQTKSGA PSTQKQDLSFLNEASPIYVTSFNSNHTACNSTTLTTAAAVATSTTGTAGLISATTITP TAVASTTTNASSAKPQTVPASGVGPLSAAIVAGAKTTATGNTSTVAPTGADRNANNCP QASVIAAAAVASSLAAASKQIPASVHHPLPTAAAAAAITAGAPASAATTTTSTTSILT NHNSIYQATALAKLPSSLPHKKLTIARSLQHLEVKEVDDDDDDLAALGANLCNINFIN YKNKHAEIPTPTTTGPLHVSPFVGNAPVIVAGPSSTLGRRKSQQSNSNTNTNPVTVSA TVDVHHSAHAAGASTAYHDHIPPPLQLPPPNKIYVDAQTLTSPRLAKNAQGGGVVVVG AAGDSLITKGGPTLNNNINNNNSLKTLSALSAAATASIKAPAVTATAANKATALQLNN NNSQQLPSYAVHHLGTLQQLTQKQQPATNATAILNAQLTSSSCSNQLSSNNSSIHSAS SASTQASSIITAPLSAGASSSAANTASTTATTKNLSSNLSNNCDLHISANNLQQQQQQ QHLQQQQHQHQQQPPRRELLTDDDEDETDDILQLNTNSLSNNLTQLNYSPNSSISRGG FELLLGDQSLRQDIRPRRRSGSSIVVLDSEDLKPCLPDVYNNLPHIRQPNEDTQEIDQ EMYTTMLKSINQDNGPHREMAVDCPDNFIARNKTPPRYPPPRPPQQKQLNNALALGGK GKMSVALNPNGGGGGSLTSPEELDLMVVDALYRKGSSSHSSSYESEVLSKKSSESFDS ISYRQLQNNNNDLIGKESQHNSNSNSSSSSCSNPKQKVVSMNGNGVASLLSNAASIIN GGGNSSSGGGNNSGSGESLPSITSTGSTPPPEYELKELSSKNSILPPVIKHRELPVDV PDSFIEMVKTPPRYPPPAHLSSLSSQISSCSSASTANTTLTRINSSNNSNTESHNMSL SPQSLKMHHQTQETSMISTMSLNGSFEDFQNQQQQQQQQQNQQQQSGNQIPQPQVAIM PAKRTDELNGSIKPVPPPRDTVRVEKDGRVQRSPLPPQLPDRRGMPGANSQQQQIAQI VEPTMEQLDSIKKYQEQLRRRREEEERIAQQNEFLRASLRGSRKLKALQDNKTGAQQQ QPVAAERSVIGVENEAYVEDEDVDKVKGYGDLIAALNRLQSQLTKNGMNTLAGRVSAA HNILSNPGVAHALAARAAVLQRRRSKATTPVSTNAMELQKDIVELLTKSNSAAAIELG NLLTSHEMEGLLLAHDRVATHTDGTPSPSLSGAGSPQPISPSSAPLPPLPVPPKSASV RGTAVPPPVVPPPLAQRSAMPLPPNVPAHNATSTGYAHMKPAGSHRPDSPPLSACFGI LNDQNDNIRIIQIEKSTEPLGATVRNEGEAVVIGRIVRGGAAEKSGLLHEGDEILEVN GQELRGKTVNDVCALLSTMQGTLTFLIVPAGSPPPGGGHHRENAVLHVRAHFDYDPED DLYIPCRELGISFQKGDVLHVISREDPNWWQAYREGEEDQTLAGLIPSQSFQHQRETM KLAIAEEAGLQGRNRGKDGGAKGSTLLCARKGRKKKKKASSEAGYPLYATTAPDETEP EEILTYEEVALYYPRATHKRPIVLIGPPNIGRHELRQRLMADSDRFSAAVPHTSRTRR EGEVPGVDYHFITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNL HPQSLKLLRASDLKPYVVLVAPPSLDKLRQKKLRNGEPFKEEELKDIIATARDMEARW GHLFDMIIINNDTERAYHQLLAEINSLEREPQWVPASWVHNNRDES" polyA_site 8405 /gene="LOC106087029" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcatactc gtcgccgtcg ttgtcgtttg tggagcccta aaaatagtta catctttttt 61 ttttgtttga aaaaaatttc ataaaaccaa agtaatttta ctcaaaaagg aaagtgttat 121 agaatagcta agaaattgtt gccataaaaa gagttttaat aattttttta cccaattata 181 ttttttcacg gtttccaata catggtgtga tatatttatg aaaagcattt tgttggccga 241 aaacaaacgc tactgagttt gaacagagct ggcaacgaaa aaggaaaaaa tttaataaaa 301 attcaataac attatcacct ttgattatag caagccagga gcaccataaa acctttggca 361 aaggtcaaat gtggaaaaaa tccaaataac aaaatgtatc gctgattcgg aaattggtat 421 taacaaacta ttggttgccc cgcctctagt ccttcctcta caacaatcgc ataactggga 481 ttttcgttta cgccgttgtg atttttgccc cgcagactac cgttttgggt ctgcatgcgt 541 gcgtgcgtgg gctttcgtga gtttgaatgc gggcaacgtg cccgcaacgt gtgtgtgcgt 601 cgttgtcgtt gtcgtcgtcg tcgttgttgt tgtcctagtt cttcgtggca tagtgtatgc 661 tctttgtaat tcatcccaaa catcaacttt tctactattg gaaaactttt cgcagaattc 721 tttgttgtgc cattagaagt ttcccctcaa agtttgtttt cttgcttact ttcaaagggc 781 gtcttatttt tcgctttggc tttgggcggc tgctgcaatg caatcgaata ccagtcgtgc 841 tactttgagt gcacaatcct cgggaacacc atcggcgtca acgatatcat catcaggcaa 901 gcaacaagtg gttgaattat ctggttatgt cattattctg gtggagaatg ttgatggtaa 961 aattaaatta tatggctctc cacccgatcg tgataatttg gaagtgggcg atgagatact 1021 cgaagttaat ggcttaacat tggataatat ttcacgaacg gaagttatac gacacataca 1081 cgattgtatt aaatcgtgta ccatatgttt acgggttcgc aagaaaaatg attccaggct 1141 ggcttgggat attggcaatt cagtgcagga cgcatttgtt atagcggttg aggaacatgc 1201 aagagaacgt ttgcaacgtt tagcggcctt aaatcgtgta acacctgtgg atattactca 1261 gttatcgaaa aagctccaac aaaccaaaag cggtgctcca tcgacacaaa aacaggactt 1321 aagtttcctc aacgaagcct cccccatcta tgtgacctca ttcaatagca atcatacggc 1381 ctgcaatagc accaccctaa cgacagcggc agcggtagcc acctctacta cggggacagc 1441 ggggctgata agtgcaacaa caataacgcc cacggctgtt gcatccacga cgactaatgc 1501 cagttcggct aagccacaga cagtaccagc cagcggtgta ggtccactat cggcagccat 1561 agtagcagga gcaaaaacca cagcaaccgg aaacacctca acagtagcac caacaggagc 1621 cgatagaaat gccaacaatt gcccccaggc ctctgtaata gcagcagcag ctgtagcatc 1681 ctcattagcg gctgcctcca agcagatacc agcctcagtt caccacccac taccaacagc 1741 agcagcagca gcagcaatca cagcaggagc cccagcatca gcggccacaa caacaacgtc 1801 cacaacctca atattgacaa atcataatag catttatcag gccacagccc tagcgaaatt 1861 gccctcctca ttgccgcaca aaaagctaac catcgcacgc agcctccaac atttggaggt 1921 taaggaggtg gacgatgacg atgatgattt ggccgcatta ggtgccaatt tgtgtaacat 1981 caatttcatt aactacaaga acaagcatgc cgaaataccc acacccacaa ccactggccc 2041 cctgcatgtt agtccatttg tgggcaacgc acctgtgata gtagcaggtc ccagttccac 2101 cttggggcga cgcaaatcgc agcagagcaa cagcaacacc aatacgaatc ctgttaccgt 2161 tagtgccaca gttgatgttc atcactcagc tcatgcggcg ggagcatcaa cagcctatca 2221 cgatcacata ccaccgcctt tacagttacc cccgcccaat aagatctatg tggatgccca 2281 aacactgacc tcgccgcgcc tggccaagaa cgcccaagga ggaggagtag tagtagtagg 2341 agcagcaggc gattctttga tcaccaaagg tggcccaact ttgaacaaca atatcaacaa 2401 caacaatagt ctaaaaactt tatcggcatt atcggcggcc gccacagcca gtatcaaggc 2461 accagccgta actgctactg ctgctaacaa ggcgacagct ctgcaactga acaataacaa 2521 ctctcaacag cttccttcgt atgcggtaca tcatttgggt acgctacagc agctgacgca 2581 gaagcagcag ccagcaacga atgcaactgc aatccttaat gcccagttaa catcttcctc 2641 gtgctcgaat cagctcagca gcaacaatag cagcattcac agtgcatcca gtgcatcgac 2701 gcaagcatca tcaataataa cggcaccatt gtcggcggga gcctcatcat cagcagcaaa 2761 tacagcatct acgacagcaa caacaaaaaa tcttagcagt aatcttagta ataattgtga 2821 tttacatata tcagcgaata atcttcaaca acaacagcaa caacaacatc tacaacagca 2881 gcagcaccag caccagcaac aaccaccgag aagagagtta ctaacagatg acgatgaaga 2941 tgaaacagat gatattttac aattgaatac aaatagttta tcaaataatt taacgcaact 3001 aaattatagt ccaaatagca gcatatcaag aggtggattt gaactactac tgggtgatca 3061 atcgttaagg caagatatca ggccccggcg tagatccggc tctagtatag tggttttaga 3121 tagtgaagat ttaaagccct gtctacccga tgtttataat aatctaccac atatacgaca 3181 gccaaacgaa gatacccaag agattgatca ggaaatgtac acaaccatgt tgaagtccat 3241 aaatcaagat aatggacctc atcgcgagat ggctgttgat tgtccagata attttatagc 3301 acgtaataaa acaccaccac gttatccgcc accccgtcca ccacagcaga agcagcttaa 3361 caatgccctg gccttggggg gcaaaggcaa aatgtcggtg gcccttaatc ccaatggagg 3421 cggaggtggt tcgctgacat cgcctgagga attggattta atggtggtgg atgctctcta 3481 tcgcaaaggt tcctcctctc attcgtcttc gtatgaaagt gaggtcttga gtaaaaagtc 3541 ctcggaatcc tttgattcca tatcctatcg tcaactgcag aacaataaca atgacttgat 3601 tggcaaagaa tctcagcaca actccaattc aaattcatcg tcgtcatctt gctcgaatcc 3661 caagcaaaaa gtggttagca tgaatggcaa tggtgtggcc agtctcttga gcaatgcggc 3721 ctccatcatt aatggtggtg gcaatagcag cagcggtgga ggcaataaca gtggcagtgg 3781 cgaatccttg cccagcataa cgagcacagg ttctacgccg ccgccggaat atgaactcaa 3841 agaattgtcc tccaaaaatt ccattttacc tcctgttatc aagcatcgcg aactgccggt 3901 agatgtaccc gatagcttca ttgaaatggt taagactccc cccagatatc ctcctcccgc 3961 ccatttgtcc tcattatcct cacaaatatc ttcctgcagt tcggcctcca ccgccaatac 4021 caccttgacg cgcatcaact cttcgaataa ttccaatacc gagtcacata atatgagctt 4081 gtcgccgcaa tcgctaaaaa tgcatcacca aactcaagag acttccatga tatccaccat 4141 gtctctgaat ggatcctttg aggatttcca aaatcagcag cagcagcaac aacaacaaca 4201 aaaccagcag cagcaatcag gcaatcaaat accacagcct caagtggcta taatgcctgc 4261 aaaacgtacc gatgagttaa atggctcgat taagccggtg ccacctccac gtgacacagt 4321 gcgtgtggaa aaagatggac gtgtacagcg ttcaccattg ccgccgcaat tacccgatcg 4381 tcgagggatg ccgggggcaa atagtcaaca acaacagatt gcccaaattg tggagccaac 4441 aatggaacaa ttggatagta ttaagaaata tcaggaacaa ttgcgtcgcc gacgagaaga 4501 ggaggagagg attgcccaac agaatgagtt tttgcgtgcc agcttacgag gttcacgaaa 4561 gcttaaagct ttgcaggata ataaaactgg cgcccaacag cagcaaccgg tagcagcaga 4621 acgttctgtt attggggtag aaaatgaagc ctatgtggag gatgaggatg tggataaagt 4681 taaaggctat ggtgatttaa ttgccgcctt aaaccgtctc cagagtcagc taaccaaaaa 4741 tggcatgaac acactcgcag gccgagtgtc ggccgctcac aatattctct ccaatccggg 4801 cgtagcccat gccttggctg cccgtgccgc ggtgctgcaa cgtcgacgct ccaaagccac 4861 cactccagtc agtacaaatg ccatggaatt gcaaaaggat atcgtggagc tcctaaccaa 4921 gtccaattct gcagcggcca ttgaattggg caacttgctg acaagtcacg aaatggaggg 4981 cctactattg gcccatgatc gtgtggccac ccacacagat ggtacaccat caccatcgct 5041 aagtggggcc ggcagtcctc agcccatatc gcctagttcg gcaccccttc cacctctgcc 5101 tgtaccacca aaatctgcct ctgtaagggg cacagcagtg ccaccacctg tggtgccgcc 5161 tccattggcc caacgcagtg caatgccttt acctcccaat gttccagccc ataatgccac 5221 cagcaccggc tatgcccata tgaagccggc cggttcgcat aggccggact cgccgccact 5281 gagtgcctgc tttggtatac tcaacgatca aaatgacaat atacgtatta tacaaattga 5341 gaaatcgact gaacccctag gtgccacagt acgcaatgaa ggtgaggcgg tagtcatagg 5401 ccgcatagta aggggaggag ctgccgaaaa gtccggcctt ctacacgagg gcgatgaaat 5461 actcgaggtg aatggtcaag agttgcgcgg caagacggtg aatgatgttt gcgccttgct 5521 aagcaccatg cagggcaccc tcaccttttt gatagtgccc gctggcagtc ctccacctgg 5581 tggcggccat catcgtgaaa atgctgtctt acatgtgcgg gctcatttcg attatgatcc 5641 ggaagatgat ttgtatatac cttgccgtga gctgggcatt agtttccaaa agggtgatgt 5701 tctacatgtc atctcgaggg aggatccaaa ttggtggcaa gcatatcgtg agggtgaaga 5761 agaccaaact ttggccggtc taatacctag tcaatcattc caacatcaaa gggaaaccat 5821 gaaattggcc atagccgaag aggcgggtct gcaaggcaga aatcgtggca aagatggtgg 5881 ggcaaaggga tcaacgctgc tgtgtgcacg caagggacgc aagaagaaga agaaggccag 5941 ttcggaagca ggatatcctt tatatgccac caccgccccc gatgaaactg aacccgagga 6001 aatactcacc tatgaagagg ttgccttgta ctatccccga gccacacaca aacgtcccat 6061 tgttctaata ggcccaccca atataggacg tcatgaattg cgtcagcgtc ttatggcgga 6121 ttccgatcgg ttttcagcag cagtgccaca tacctcccgc acccgtcgtg aaggcgaagt 6181 tcctggtgtc gactatcatt ttatcacacg ccaggctttt gaagctgata ttttggctcg 6241 tcgctttgtg gagcatggtg aatatgaaaa agcttactat ggcacttcct tggaagccat 6301 acgtacagtt gtggccagtg gtaaaatctg tgttcttaat ctacatccac aaagtcttaa 6361 acttttaaga gcctcggatt tgaaacccta tgttgtgctg gtggctccac ctagtctaga 6421 taaactaaga caaaagaaat tacgcaatgg tgaaccattt aaggaggagg agctaaaaga 6481 tatcattgct accgcccgag acatggaggc ccgctggggt catttattcg atatgatcat 6541 tattaataat gataccgaaa gagcttatca tcaattgttg gccgagatta attcattgga 6601 acgtgagcct caatgggtgc cagccagctg ggtgcataac aatagggatg agtcataatt 6661 ttttaataaa aaaaaaaaaa cttgaaacaa attttaagat ttaggcaaac agctaagaaa 6721 aaattggaag ggaattttaa aacaaaaatt gtaaataaaa catgatatta agcaaaagga 6781 tttgtgaaca gaaaaaaaaa ttaagaaatc ataatttata caaaatgaag aaaacattta 6841 tatatgcaat attttttatt attattatta taatttttat tgattgagaa atttgttaat 6901 gtagatataa caattgtgtt tgaatgtggt gtttttacat ccaaatttac tatataagta 6961 aataatataa ttaaaaaaaa aaaaacaaaa acatgaataa aattaatgtg tatattatta 7021 ttttttttaa tgaatttctt ttcaaacccc gaaaatcaca aatagttttt ttttaataca 7081 taacacttaa caataactat attacataaa agaaaatttg tttgacaaat atcgaatgta 7141 agtataataa aaaaaacaaa aaatcttcct taatttccac tttttatgta gaaacctaaa 7201 aatgtctaga aattataaaa aaaaaatttt gttttgtgtt tttttaataa tttgtaaact 7261 aaacattcca tttatttctt tttttacata tataaaatat gtttttaaaa ttttatgttt 7321 taattttctt tttaataaaa aaaaacaaag aaaactctaa gctaaacttt aaaaaaacta 7381 taaaaaaaaa attaaaaaat tatatagttg ttattgaaaa taaagaaaaa gacaacatac 7441 aaaacaaaat gtataacttc taagcaaatg ttaaaagcag atggtcttaa caataacagc 7501 aaaccaacta ataaacaatt ttatgaatcc aaaaatcaac aacaacaaca acaccccatt 7561 tactttattg caaaaccaag aacagcaaca actacaacat cattaaatgt atgttaagta 7621 taagaaaaat cgaaggacat caatcctact gctagtaaag ttttcatagc ctaaagaaaa 7681 cgtgttacat tctaaactaa tcctcgatat acatcaaaaa gaaatattaa caaaactgca 7741 agcaaaaaat atcgaaaatt tgtatttaaa gaaaacaaaa aaaaaataca atgaataaaa 7801 atacttccac ttgttaaata tcttgaaacc ctgccccact ttatagattt tgttacaaaa 7861 tttgagtaca gagttgtgtt tttctgaaga aacgaaaata caattccaat gttaaaattc 7921 tgttaacatt ttgtaagtga aatatgaaat tcaacagaaa ccttgcaaaa aatacatacc 7981 ctatagaaaa acacatatat catccgacat gttttccata tatacgtaca tacatatata 8041 ttgtcacatt aatatatttg tatattgttt tcataatttt gtagttaaat ggaaattatt 8101 ttttgtgttt tattgattgt ttttttttat ataacatata catgaatgga taatggaagc 8161 ataacctcca ccaccaccaa caacacccct taggacaaaa gcaaacgaat ctgaaagtga 8221 agcgaaaaag tatacataaa aataaaaagc caacaacaac aacaacaaat gaaaacatat 8281 tagaatttag caaagtaact gagaaatggt aacatacaaa aaaaaactat atcgataaaa 8341 agaagaaaaa atcactaaca gagaaaaaat caagaagatt ataaaacaga gcaagaaaaa 8401 agaaa