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LOCUS XM_059368238 6439 bp mRNA linear INV 02-SEP-2023 (LOC106082887), transcript variant X5, mRNA. ACCESSION XM_059368238 VERSION XM_059368238.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6439 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6439 /gene="LOC106082887" /note="E3 ubiquitin-protein ligase UBR1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082887" CDS 396..5945 /gene="LOC106082887" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X1" /protein_id="XP_059224221.1" /db_xref="GeneID:106082887" /translation="MDSYEDEVVAPTTTSSESPLKDWRVKFLADTLDKNDFIEFFQKE SRQYFEHDTSGADSARSWRDALSEIKNLKNNKRGCEGSLKCMFKEAAAKEGIIDVLME FILGDNPNIVLEKLRLEGATSAVCGKVFKIGEPTYSCRECGMDPTCVLCVNCFKQSAH RYHKYKMSTSGGGGCCDCGDEEAWKKDHYCEEHLRGKENSSSSTIITDAIKERCEIAF VAILTFCVNYLEIETNASLKCLDGDGIGKDYFCTVLYNDESHTFDQVIQTLTKIAKVQ HKEATEIVASIDREGRAVVKCDSFNECAALKEAIEKQSVPPNMAMPNSRANQSLRVNV LHIRAVACQQFALQLLTWFQEFLVRHSTFRQIFARIVMDKKAPYCIRHILEYDVALWK TARTCWHRLLISGMLMEYDNKMALAQEFSKNYATIVQDFISDDHDHSYSIVSLSVQLF TVPSIAHYLIAQEGIFYKLLHTFYHKSIEDYMQNKTLHFSKNVSTLSHFKRAAYILYD LRYILSFKPDFWTQELREGFNEGCKALLRVLNAMQGMESVTRQTGQHMDYEPEWECAF NLHIKLANTISLVLEWAATDKEVLEKLCVMVMRYLMQNTFIIGQAKKEQRTVENHIAE CLIYDVSSKPVSIHLPLSRFFAGIYLHLGQYGLNFDMISSLKRTPEEIMEPILCTQVM MAQVHSGMWRRNGYSLLHQLYFYRNVRCRTEMLDRDIVGMQIGASLIESNEYLIHLLN KFNLIEWIQPDYEDSNVEPTTDDDFIRQLSMIDEFLELLIVIIGERFMPGVAHVTEED RTKKEIMQLLCIKSYSHSELNRALPDSNNDTALEDVIDSVAVFKKPQKTDAKGVYELR EELYDGFNMYFYHYTKEDKSKSEETQRLRRKNKGELVCCPPPKLPKLTDSFVTIANLL QCDVMMHLMKTILERALDLKRKSFQENHLQKILFLIGYGLQEEESNNYPFLSFYQWAH RYKLLPKLEELSRSARVEAHRDFILWTIKKFKDLQAKQTTAEGLERMQSDDLEPTSSA HDDNGSGDIAATTLTSAEQEKREKEERARLAAERRAKILAQMQSAQNKFMTSNAEMFA SANDVASDANAGTAMEWQDENLEGAVAYNSTACLGVERRLQQPEEEKYKCILCFEEAV VSKDGPTLVYSAFVQKSKVLKPESNYAYSVHTSSCGHVMHVNCWQEYYNNEESKEIRR PRRHPLQVFPSSPSTEFQCPYCRCLSNTVLPLTPPLSKYSVPNVFHAGDEMFPIDLWI EGIRVFSDKLNNLILTEDPDLWSFHLPEWLPTLKEAHIPIDPKQFEKMAQPTQRGELP VSWINFVQHYMKSLKRNEDEGLLNMWHTCVYTVQALEVYLRSVGKPLKDEMSIRHQSC LSGLIRACCLYSGNLTQTDVKSLIKPVAELLNVVFKHNGDSVLEWNCFSKMVSTIMMV PNILFARVRGASVVANGSLMDFYTLQVFLLANVVKSIVLFEQTAEGLMDIEEEDYVAL SDKQLENISIFFNKYNIQARQKAKMAAAAAAAQTQQPKKSVSKESSQEEQSTTVAAES AASDDIDAGMTDVTQQQQQQQSTIAEPKPELLSPQLVTALLDHVKMEMREFLRCSCLF FHFVTDVEFPDSLATSESDTFENMCKYLGLNSQLESYFDNATPYATIMEMFASHHDIT NLDVVTTKIKMTDDPLVIMPCNRTVPQLVNLPEDYSDLINSVSDFSCPNNEREEMKTP TMCLMCGEILCAQSYCCQPDLDSRNVGACTYHAYFCGAEIAPFLRIRDCQIVYLGKNK GCFVQPPYLDDYGETDQGLRRGNPLRLCPARYSKIHLTWLAHGLHEEIARLNDHSSAI TTQWHHM" polyA_site 6439 /gene="LOC106082887" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attgaaagaa aaatatgtct gcctaagaag aaacaaataa tagaaaatta caaattgaaa 61 aagtgaaaat acaaagacac aagaaaaatt tgaaattagt taaccacaaa ataaagcgaa 121 aacatttcaa atgattagca gcgcacaatt tctgtacaga gctgttgcca tttgctagtg 181 tctcaagaca tacacataca caacaacgat ataagaagaa gaagaaccaa ctggaagcgg 241 tcgtaaaaaa tctcacaact ggatagcttc cggcaacatt ctatagcagc atcaacaata 301 acaacaacca taactcttta aaacgccatc aagctccgaa atccatcatt ttcatcgtct 361 gtcgcacgca tcaattgtga tctctagcct aaagcatgga tagctatgag gatgaggttg 421 ttgcaccaac aaccacatca tcggaatcgc ctctcaaaga ttggcgtgta aaatttttag 481 ctgacacctt ggataaaaat gatttcatag aattctttca aaaagaatcc aggcagtatt 541 ttgaacacga taccagtggt gcggattctg cccgaagctg gagagatgct ctatccgaaa 601 ttaagaatct taagaataat aaacgtggct gcgaaggttc cttaaaatgc atgttcaaag 661 aggctgctgc caaagaaggc attatcgatg tccttatgga attcatattg ggcgacaatc 721 ccaatattgt gttggagaaa ttacgccttg agggtgccac ctcggcggtg tgtggcaaag 781 ttttcaaaat tggcgaaccc acgtacagct gtcgtgagtg cggcatggat cccacctgtg 841 tattgtgtgt gaattgtttt aaacaatcgg cacatcgtta tcacaaatat aagatgtcca 901 cctctggtgg tggtggatgt tgcgattgcg gtgatgagga ggcctggaag aaggatcatt 961 attgcgaaga acacttgcgg ggcaaggaaa acagttcaag cagtaccatt ataacagatg 1021 ccattaaaga acgctgtgaa attgcctttg tggccattct aacattttgt gtcaactact 1081 tggaaatcga gacaaatgct agtcttaaat gcctcgatgg ggatggcatt ggcaaggatt 1141 atttttgcac cgtcctctac aacgatgaat cccatacatt tgatcaggtc atacagactc 1201 tgacgaaaat tgctaaagtt caacacaagg aagctaccga aatcgtggcc agtattgatc 1261 gagaaggacg cgctgtggtt aaatgtgata gtttcaacga atgtgctgcc ctcaaggagg 1321 caattgagaa gcagtcggtg ccgcccaata tggctatgcc aaatagtagg gccaatcaat 1381 cgcttcgcgt caatgtgttg catatacgcg ctgtggcctg ccagcaattt gcgttgcagt 1441 tgctgacatg gttccaagag tttcttgtgc gtcacagtac tttccgccaa atattcgccc 1501 gcattgttat ggacaagaag gcgccctatt gcatacgcca catattggaa tacgatgtgg 1561 ccttgtggaa gaccgcccgt acttgttggc accgtttgtt gatttccggc atgctcatgg 1621 agtacgacaa caaaatggcc ttggcccaag agttctccaa aaactatgct accattgtgc 1681 aagacttcat aagcgatgac catgaccatt cgtattcgat tgtgtcactt agtgtccaac 1741 ttttcacagt gccaagtata gcccattatt tgatagctca agagggtatc ttctacaagt 1801 tgttgcacac cttctaccac aagtccattg aggattatat gcaaaacaag acattgcact 1861 tctccaagaa tgtctcaaca ctgagccatt tcaagcgggc cgcctatata ctctacgatt 1921 tacgctacat acttagtttt aagcccgact tttggaccca agaactgcga gaaggcttca 1981 atgaaggctg taaggctcta ctgcgtgtcc taaatgccat gcagggcatg gaatcggtga 2041 cgcgtcaaac gggccagcac atggactatg agcccgagtg ggagtgtgca ttcaatttgc 2101 acataaagtt ggccaacacc atttcgctgg tgttggaatg ggctgccaca gacaaggagg 2161 tgttggagaa actctgtgtc atggtaatgc gttatttgat gcagaatacc tttattattg 2221 gccaagccaa gaaggagcag cgcacagtgg aaaatcacat tgctgagtgt ttgatttatg 2281 atgtctcttc caagccggtg tccatacatt tacccttgtc ccgtttcttt gcgggcatct 2341 atttgcattt gggccaatac ggtttgaact ttgatatgat tagcagtttg aagcgaacac 2401 ccgaagagat aatggagccc attttatgca cccaggttat gatggcccag gttcattctg 2461 gcatgtggcg tcgtaatggc tactccctgc tgcatcagtt gtatttctac cgcaatgtac 2521 gttgccgcac tgaaatgttg gatcgtgata ttgtgggcat gcaaattggc gcttcgttga 2581 tcgaaagcaa tgagtatctc atccatttgc ttaacaaatt caatctgatt gagtggatac 2641 agccagacta tgaagattcc aatgtggaac caaccaccga tgatgatttc atacgacaac 2701 tctcgatgat tgatgagttc cttgaactat tgattgtcat cattggtgag cgttttatgc 2761 ccggtgtagc ccatgtcacc gaagaggatc gcaccaagaa ggaaattatg cagttgttgt 2821 gcattaaatc gtactcgcat tctgaactga atcgtgctct gcccgattcg aataacgaca 2881 ctgccctaga ggatgttatt gattcggtgg ctgttttcaa gaaaccccaa aagaccgatg 2941 ccaagggtgt ttatgagttg cgggaggaac tttacgatgg cttcaacatg tacttctacc 3001 actacaccaa ggaggataaa tcaaagtcag aagagacaca acgattgcgt cgcaagaaca 3061 agggtgaatt ggtgtgttgt ccaccgccga aattgccaaa gcttacggat agttttgtga 3121 caattgccaa tttgttgcaa tgtgatgtca tgatgcacct tatgaaaacc attttggaaa 3181 gagcattaga cttgaagagg aagagtttcc aagaaaatca tttgcaaaag attctattcc 3241 tcattggtta tggcttgcaa gaagaggaat ccaacaacta tcccttcttg tcgttttatc 3301 agtgggccca tagatacaaa cttttgccaa agctagaaga gttgtcacgt agtgccaggg 3361 ttgaagctca tcgcgatttc attttatgga caattaaaaa attcaaagat ttacaagcca 3421 aacaaacaac agccgaaggt ctcgaacgca tgcaaagcga tgatcttgaa ccaacatcgt 3481 cggcgcatga tgataatggc agcggtgata ttgctgcaac aacattaacc tcagccgagc 3541 aggagaaacg tgagaaagag gagagggcac gtttagcggc tgagcggcgt gccaagattc 3601 tggcacaaat gcaatcagct caaaataagt tcatgacctc caatgcggaa atgtttgcca 3661 gtgccaatga tgtggccagt gatgccaatg ccggtacggc catggaatgg caagatgaaa 3721 atctagaagg ggcagtggcc tataattcca ccgcttgttt gggtgtggaa cgaaggctgc 3781 aacaacccga agaggagaaa tataagtgta tattgtgttt tgaagaggca gtggttagca 3841 aagatggtcc cactttggtc tactcggcct ttgtgcaaaa gtccaaggtt ctcaaaccag 3901 agtccaatta cgcttactcc gtacacacca gcagttgtgg ccatgtcatg catgtcaact 3961 gctggcagga atactacaac aatgaggagt ccaaggaaat cagacgaccc agacgtcatc 4021 ccttgcaagt tttcccctca tcaccgagca ccgagtttca gtgcccctat tgccgttgtc 4081 tcagcaatac tgtgctgcct ctaacgcctc cgctctccaa gtattcggta ccaaatgtat 4141 tccatgccgg cgacgaaatg ttccccattg atttgtggat cgaaggcatt cgtgtgttta 4201 gtgataaact taataatctc atattgaccg aagatcccga cctatggagt ttccatttgc 4261 ccgaatggct gcccactctc aaagaggccc acatacccat agatcccaaa caatttgaaa 4321 aaatggccca gccaacacag cgtggtgaat tgccagttag ttggattaat ttcgtacaac 4381 actacatgaa atcactgaaa cgcaacgagg acgaaggtct gctgaatatg tggcacactt 4441 gtgtgtacac agtgcaagct ttggaagtgt atctgcgatc tgtgggtaaa cccttgaagg 4501 atgaaatgtc catacgtcac cagagttgtt tgagtggcct aatacgggct tgttgtctgt 4561 acagtggtaa tttgacacaa accgatgtta agagcttaat caaacctgtg gccgaactct 4621 tgaatgtggt gttcaaacat aatggcgatt cagtgttgga atggaactgc ttcagcaaaa 4681 tggtatccac aattatgatg gtaccgaata tcctcttcgc acgtgtccga ggagcttcgg 4741 ttgttgccaa tggcagctta atggactttt atacgctaca agttttccta ttggccaatg 4801 ttgtaaaatc catagttctg tttgagcaga cagccgaagg cctaatggac attgaggaag 4861 aagattatgt ggcgcttagt gataaacaat tggaaaatat ttcgatattc tttaacaaat 4921 acaacataca ggccaggcaa aaggctaaga tggcagcggc ggcggcggcg gcgcagacac 4981 agcagccaaa gaagtcagtt agtaaagaga gctcgcagga agagcaatca acaacagttg 5041 cagcagagtc tgcggcaagc gatgatatcg atgccggcat gacagatgtc acacaacaac 5101 aacagcagca acagtcaaca attgccgaac ctaaacccga attgttaagc ccgcagttgg 5161 tgacagccct gctggatcat gtcaaaatgg aaatgcgtga attcctgcgt tgttcctgtc 5221 tcttcttcca ctttgtcacc gatgtggaat tccccgatag tctggccacc agcgaaagtg 5281 atacctttga gaatatgtgt aaatatctgg gcctcaacag ccaactggag tcgtacttcg 5341 acaatgccac cccctatgcc acaattatgg aaatgtttgc ctcgcatcat gatataacca 5401 acttggatgt ggtgaccaca aaaatcaaaa tgaccgatga tcccctggtg ataatgccct 5461 gcaatcgtac cgtgccgcaa ctcgtcaatc tgcccgagga ctatagtgat ctcatcaaca 5521 gtgtctcgga ctttagttgt cccaacaatg agcgcgagga gatgaagacc cccaccatgt 5581 gtctgatgtg tggggagatc ttgtgtgccc aatcgtattg ctgccagccc gatttggata 5641 gccgcaatgt gggtgcctgc acctatcatg cgtatttctg tggagcggaa atagcaccct 5701 tcctgcgtat acgagattgc cagattgtgt atttgggcaa gaataaggga tgctttgtgc 5761 agccccccta tctggatgac tatggcgaga cggatcaagg cctaaggcgt ggcaatcccc 5821 tgcgtttgtg tccagcccgc tatagtaaaa tacatctgac atggttggcc catgggctgc 5881 atgaggagat agcgcgtctg aatgatcact cgtcggccat aaccacacag tggcatcaca 5941 tgtagttgca gttgcagttg cgctgcaagt caaagtcaaa tcatcattat tataatacta 6001 ttattaataa ttattaaatt aattaaatgt cgtcgcacct atgcaaaaca aacaaaaaca 6061 aaacggaagt aaaaaccaac aacaacaaca acaataacaa catagagtat atactaaaca 6121 aacaaaacaa caacaacagc agttaatgtg atttaaatta aaaaaaaaac aaataaacaa 6181 aaatagataa caacaacaaa acgaaacgaa agctaatgca atatctatgt taattcacct 6241 cctccaggct agggatatgc tgtatgaaga agaagaaaaa gaaggaggag gtttacaaac 6301 aaattaaaca aagccctcct ttctctatct ctctctctct cactctcata ctctcataaa 6361 tgaaaacaca acactcgtaa tgaatgtatt aaactcaaca cactcacaca aagtaaagat 6421 tagaaaaaaa aaacaaaaa