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LOCUS XM_059368237 6436 bp mRNA linear INV 02-SEP-2023 (LOC106082887), transcript variant X4, mRNA. ACCESSION XM_059368237 VERSION XM_059368237.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6436 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6436 /gene="LOC106082887" /note="E3 ubiquitin-protein ligase UBR1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082887" CDS 393..5942 /gene="LOC106082887" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X1" /protein_id="XP_059224220.1" /db_xref="GeneID:106082887" /translation="MDSYEDEVVAPTTTSSESPLKDWRVKFLADTLDKNDFIEFFQKE SRQYFEHDTSGADSARSWRDALSEIKNLKNNKRGCEGSLKCMFKEAAAKEGIIDVLME FILGDNPNIVLEKLRLEGATSAVCGKVFKIGEPTYSCRECGMDPTCVLCVNCFKQSAH RYHKYKMSTSGGGGCCDCGDEEAWKKDHYCEEHLRGKENSSSSTIITDAIKERCEIAF VAILTFCVNYLEIETNASLKCLDGDGIGKDYFCTVLYNDESHTFDQVIQTLTKIAKVQ HKEATEIVASIDREGRAVVKCDSFNECAALKEAIEKQSVPPNMAMPNSRANQSLRVNV LHIRAVACQQFALQLLTWFQEFLVRHSTFRQIFARIVMDKKAPYCIRHILEYDVALWK TARTCWHRLLISGMLMEYDNKMALAQEFSKNYATIVQDFISDDHDHSYSIVSLSVQLF TVPSIAHYLIAQEGIFYKLLHTFYHKSIEDYMQNKTLHFSKNVSTLSHFKRAAYILYD LRYILSFKPDFWTQELREGFNEGCKALLRVLNAMQGMESVTRQTGQHMDYEPEWECAF NLHIKLANTISLVLEWAATDKEVLEKLCVMVMRYLMQNTFIIGQAKKEQRTVENHIAE CLIYDVSSKPVSIHLPLSRFFAGIYLHLGQYGLNFDMISSLKRTPEEIMEPILCTQVM MAQVHSGMWRRNGYSLLHQLYFYRNVRCRTEMLDRDIVGMQIGASLIESNEYLIHLLN KFNLIEWIQPDYEDSNVEPTTDDDFIRQLSMIDEFLELLIVIIGERFMPGVAHVTEED RTKKEIMQLLCIKSYSHSELNRALPDSNNDTALEDVIDSVAVFKKPQKTDAKGVYELR EELYDGFNMYFYHYTKEDKSKSEETQRLRRKNKGELVCCPPPKLPKLTDSFVTIANLL QCDVMMHLMKTILERALDLKRKSFQENHLQKILFLIGYGLQEEESNNYPFLSFYQWAH RYKLLPKLEELSRSARVEAHRDFILWTIKKFKDLQAKQTTAEGLERMQSDDLEPTSSA HDDNGSGDIAATTLTSAEQEKREKEERARLAAERRAKILAQMQSAQNKFMTSNAEMFA SANDVASDANAGTAMEWQDENLEGAVAYNSTACLGVERRLQQPEEEKYKCILCFEEAV VSKDGPTLVYSAFVQKSKVLKPESNYAYSVHTSSCGHVMHVNCWQEYYNNEESKEIRR PRRHPLQVFPSSPSTEFQCPYCRCLSNTVLPLTPPLSKYSVPNVFHAGDEMFPIDLWI EGIRVFSDKLNNLILTEDPDLWSFHLPEWLPTLKEAHIPIDPKQFEKMAQPTQRGELP VSWINFVQHYMKSLKRNEDEGLLNMWHTCVYTVQALEVYLRSVGKPLKDEMSIRHQSC LSGLIRACCLYSGNLTQTDVKSLIKPVAELLNVVFKHNGDSVLEWNCFSKMVSTIMMV PNILFARVRGASVVANGSLMDFYTLQVFLLANVVKSIVLFEQTAEGLMDIEEEDYVAL SDKQLENISIFFNKYNIQARQKAKMAAAAAAAQTQQPKKSVSKESSQEEQSTTVAAES AASDDIDAGMTDVTQQQQQQQSTIAEPKPELLSPQLVTALLDHVKMEMREFLRCSCLF FHFVTDVEFPDSLATSESDTFENMCKYLGLNSQLESYFDNATPYATIMEMFASHHDIT NLDVVTTKIKMTDDPLVIMPCNRTVPQLVNLPEDYSDLINSVSDFSCPNNEREEMKTP TMCLMCGEILCAQSYCCQPDLDSRNVGACTYHAYFCGAEIAPFLRIRDCQIVYLGKNK GCFVQPPYLDDYGETDQGLRRGNPLRLCPARYSKIHLTWLAHGLHEEIARLNDHSSAI TTQWHHM" polyA_site 6436 /gene="LOC106082887" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaaatagtg gcaaactgcc taagaagaaa caaataatag aaaattacaa attgaaaaag 61 tgaaaataca aagacacaag aaaaatttga aattagttaa ccacaaaata aagcgaaaac 121 atttcaaatg attagcagcg cacaatttct gtacagagct gttgccattt gctagtgtct 181 caagacatac acatacacaa caacgatata agaagaagaa gaaccaactg gaagcggtcg 241 taaaaaatct cacaactgga tagcttccgg caacattcta tagcagcatc aacaataaca 301 acaaccataa ctctttaaaa cgccatcaag ctccgaaatc catcattttc atcgtctgtc 361 gcacgcatca attgtgatct ctagcctaaa gcatggatag ctatgaggat gaggttgttg 421 caccaacaac cacatcatcg gaatcgcctc tcaaagattg gcgtgtaaaa tttttagctg 481 acaccttgga taaaaatgat ttcatagaat tctttcaaaa agaatccagg cagtattttg 541 aacacgatac cagtggtgcg gattctgccc gaagctggag agatgctcta tccgaaatta 601 agaatcttaa gaataataaa cgtggctgcg aaggttcctt aaaatgcatg ttcaaagagg 661 ctgctgccaa agaaggcatt atcgatgtcc ttatggaatt catattgggc gacaatccca 721 atattgtgtt ggagaaatta cgccttgagg gtgccacctc ggcggtgtgt ggcaaagttt 781 tcaaaattgg cgaacccacg tacagctgtc gtgagtgcgg catggatccc acctgtgtat 841 tgtgtgtgaa ttgttttaaa caatcggcac atcgttatca caaatataag atgtccacct 901 ctggtggtgg tggatgttgc gattgcggtg atgaggaggc ctggaagaag gatcattatt 961 gcgaagaaca cttgcggggc aaggaaaaca gttcaagcag taccattata acagatgcca 1021 ttaaagaacg ctgtgaaatt gcctttgtgg ccattctaac attttgtgtc aactacttgg 1081 aaatcgagac aaatgctagt cttaaatgcc tcgatgggga tggcattggc aaggattatt 1141 tttgcaccgt cctctacaac gatgaatccc atacatttga tcaggtcata cagactctga 1201 cgaaaattgc taaagttcaa cacaaggaag ctaccgaaat cgtggccagt attgatcgag 1261 aaggacgcgc tgtggttaaa tgtgatagtt tcaacgaatg tgctgccctc aaggaggcaa 1321 ttgagaagca gtcggtgccg cccaatatgg ctatgccaaa tagtagggcc aatcaatcgc 1381 ttcgcgtcaa tgtgttgcat atacgcgctg tggcctgcca gcaatttgcg ttgcagttgc 1441 tgacatggtt ccaagagttt cttgtgcgtc acagtacttt ccgccaaata ttcgcccgca 1501 ttgttatgga caagaaggcg ccctattgca tacgccacat attggaatac gatgtggcct 1561 tgtggaagac cgcccgtact tgttggcacc gtttgttgat ttccggcatg ctcatggagt 1621 acgacaacaa aatggccttg gcccaagagt tctccaaaaa ctatgctacc attgtgcaag 1681 acttcataag cgatgaccat gaccattcgt attcgattgt gtcacttagt gtccaacttt 1741 tcacagtgcc aagtatagcc cattatttga tagctcaaga gggtatcttc tacaagttgt 1801 tgcacacctt ctaccacaag tccattgagg attatatgca aaacaagaca ttgcacttct 1861 ccaagaatgt ctcaacactg agccatttca agcgggccgc ctatatactc tacgatttac 1921 gctacatact tagttttaag cccgactttt ggacccaaga actgcgagaa ggcttcaatg 1981 aaggctgtaa ggctctactg cgtgtcctaa atgccatgca gggcatggaa tcggtgacgc 2041 gtcaaacggg ccagcacatg gactatgagc ccgagtggga gtgtgcattc aatttgcaca 2101 taaagttggc caacaccatt tcgctggtgt tggaatgggc tgccacagac aaggaggtgt 2161 tggagaaact ctgtgtcatg gtaatgcgtt atttgatgca gaataccttt attattggcc 2221 aagccaagaa ggagcagcgc acagtggaaa atcacattgc tgagtgtttg atttatgatg 2281 tctcttccaa gccggtgtcc atacatttac ccttgtcccg tttctttgcg ggcatctatt 2341 tgcatttggg ccaatacggt ttgaactttg atatgattag cagtttgaag cgaacacccg 2401 aagagataat ggagcccatt ttatgcaccc aggttatgat ggcccaggtt cattctggca 2461 tgtggcgtcg taatggctac tccctgctgc atcagttgta tttctaccgc aatgtacgtt 2521 gccgcactga aatgttggat cgtgatattg tgggcatgca aattggcgct tcgttgatcg 2581 aaagcaatga gtatctcatc catttgctta acaaattcaa tctgattgag tggatacagc 2641 cagactatga agattccaat gtggaaccaa ccaccgatga tgatttcata cgacaactct 2701 cgatgattga tgagttcctt gaactattga ttgtcatcat tggtgagcgt tttatgcccg 2761 gtgtagccca tgtcaccgaa gaggatcgca ccaagaagga aattatgcag ttgttgtgca 2821 ttaaatcgta ctcgcattct gaactgaatc gtgctctgcc cgattcgaat aacgacactg 2881 ccctagagga tgttattgat tcggtggctg ttttcaagaa accccaaaag accgatgcca 2941 agggtgttta tgagttgcgg gaggaacttt acgatggctt caacatgtac ttctaccact 3001 acaccaagga ggataaatca aagtcagaag agacacaacg attgcgtcgc aagaacaagg 3061 gtgaattggt gtgttgtcca ccgccgaaat tgccaaagct tacggatagt tttgtgacaa 3121 ttgccaattt gttgcaatgt gatgtcatga tgcaccttat gaaaaccatt ttggaaagag 3181 cattagactt gaagaggaag agtttccaag aaaatcattt gcaaaagatt ctattcctca 3241 ttggttatgg cttgcaagaa gaggaatcca acaactatcc cttcttgtcg ttttatcagt 3301 gggcccatag atacaaactt ttgccaaagc tagaagagtt gtcacgtagt gccagggttg 3361 aagctcatcg cgatttcatt ttatggacaa ttaaaaaatt caaagattta caagccaaac 3421 aaacaacagc cgaaggtctc gaacgcatgc aaagcgatga tcttgaacca acatcgtcgg 3481 cgcatgatga taatggcagc ggtgatattg ctgcaacaac attaacctca gccgagcagg 3541 agaaacgtga gaaagaggag agggcacgtt tagcggctga gcggcgtgcc aagattctgg 3601 cacaaatgca atcagctcaa aataagttca tgacctccaa tgcggaaatg tttgccagtg 3661 ccaatgatgt ggccagtgat gccaatgccg gtacggccat ggaatggcaa gatgaaaatc 3721 tagaaggggc agtggcctat aattccaccg cttgtttggg tgtggaacga aggctgcaac 3781 aacccgaaga ggagaaatat aagtgtatat tgtgttttga agaggcagtg gttagcaaag 3841 atggtcccac tttggtctac tcggcctttg tgcaaaagtc caaggttctc aaaccagagt 3901 ccaattacgc ttactccgta cacaccagca gttgtggcca tgtcatgcat gtcaactgct 3961 ggcaggaata ctacaacaat gaggagtcca aggaaatcag acgacccaga cgtcatccct 4021 tgcaagtttt cccctcatca ccgagcaccg agtttcagtg cccctattgc cgttgtctca 4081 gcaatactgt gctgcctcta acgcctccgc tctccaagta ttcggtacca aatgtattcc 4141 atgccggcga cgaaatgttc cccattgatt tgtggatcga aggcattcgt gtgtttagtg 4201 ataaacttaa taatctcata ttgaccgaag atcccgacct atggagtttc catttgcccg 4261 aatggctgcc cactctcaaa gaggcccaca tacccataga tcccaaacaa tttgaaaaaa 4321 tggcccagcc aacacagcgt ggtgaattgc cagttagttg gattaatttc gtacaacact 4381 acatgaaatc actgaaacgc aacgaggacg aaggtctgct gaatatgtgg cacacttgtg 4441 tgtacacagt gcaagctttg gaagtgtatc tgcgatctgt gggtaaaccc ttgaaggatg 4501 aaatgtccat acgtcaccag agttgtttga gtggcctaat acgggcttgt tgtctgtaca 4561 gtggtaattt gacacaaacc gatgttaaga gcttaatcaa acctgtggcc gaactcttga 4621 atgtggtgtt caaacataat ggcgattcag tgttggaatg gaactgcttc agcaaaatgg 4681 tatccacaat tatgatggta ccgaatatcc tcttcgcacg tgtccgagga gcttcggttg 4741 ttgccaatgg cagcttaatg gacttttata cgctacaagt tttcctattg gccaatgttg 4801 taaaatccat agttctgttt gagcagacag ccgaaggcct aatggacatt gaggaagaag 4861 attatgtggc gcttagtgat aaacaattgg aaaatatttc gatattcttt aacaaataca 4921 acatacaggc caggcaaaag gctaagatgg cagcggcggc ggcggcggcg cagacacagc 4981 agccaaagaa gtcagttagt aaagagagct cgcaggaaga gcaatcaaca acagttgcag 5041 cagagtctgc ggcaagcgat gatatcgatg ccggcatgac agatgtcaca caacaacaac 5101 agcagcaaca gtcaacaatt gccgaaccta aacccgaatt gttaagcccg cagttggtga 5161 cagccctgct ggatcatgtc aaaatggaaa tgcgtgaatt cctgcgttgt tcctgtctct 5221 tcttccactt tgtcaccgat gtggaattcc ccgatagtct ggccaccagc gaaagtgata 5281 cctttgagaa tatgtgtaaa tatctgggcc tcaacagcca actggagtcg tacttcgaca 5341 atgccacccc ctatgccaca attatggaaa tgtttgcctc gcatcatgat ataaccaact 5401 tggatgtggt gaccacaaaa atcaaaatga ccgatgatcc cctggtgata atgccctgca 5461 atcgtaccgt gccgcaactc gtcaatctgc ccgaggacta tagtgatctc atcaacagtg 5521 tctcggactt tagttgtccc aacaatgagc gcgaggagat gaagaccccc accatgtgtc 5581 tgatgtgtgg ggagatcttg tgtgcccaat cgtattgctg ccagcccgat ttggatagcc 5641 gcaatgtggg tgcctgcacc tatcatgcgt atttctgtgg agcggaaata gcacccttcc 5701 tgcgtatacg agattgccag attgtgtatt tgggcaagaa taagggatgc tttgtgcagc 5761 ccccctatct ggatgactat ggcgagacgg atcaaggcct aaggcgtggc aatcccctgc 5821 gtttgtgtcc agcccgctat agtaaaatac atctgacatg gttggcccat gggctgcatg 5881 aggagatagc gcgtctgaat gatcactcgt cggccataac cacacagtgg catcacatgt 5941 agttgcagtt gcagttgcgc tgcaagtcaa agtcaaatca tcattattat aatactatta 6001 ttaataatta ttaaattaat taaatgtcgt cgcacctatg caaaacaaac aaaaacaaaa 6061 cggaagtaaa aaccaacaac aacaacaaca ataacaacat agagtatata ctaaacaaac 6121 aaaacaacaa caacagcagt taatgtgatt taaattaaaa aaaaaacaaa taaacaaaaa 6181 tagataacaa caacaaaacg aaacgaaagc taatgcaata tctatgttaa ttcacctcct 6241 ccaggctagg gatatgctgt atgaagaaga agaaaaagaa ggaggaggtt tacaaacaaa 6301 ttaaacaaag ccctcctttc tctatctctc tctctctcac tctcatactc tcataaatga 6361 aaacacaaca ctcgtaatga atgtattaaa ctcaacacac tcacacaaag taaagattag 6421 aaaaaaaaaa caaaaa