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LOCUS XM_059368236 6437 bp mRNA linear INV 02-SEP-2023 (LOC106082887), transcript variant X3, mRNA. ACCESSION XM_059368236 VERSION XM_059368236.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6437 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6437 /gene="LOC106082887" /note="E3 ubiquitin-protein ligase UBR1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082887" CDS 394..5943 /gene="LOC106082887" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X1" /protein_id="XP_059224219.1" /db_xref="GeneID:106082887" /translation="MDSYEDEVVAPTTTSSESPLKDWRVKFLADTLDKNDFIEFFQKE SRQYFEHDTSGADSARSWRDALSEIKNLKNNKRGCEGSLKCMFKEAAAKEGIIDVLME FILGDNPNIVLEKLRLEGATSAVCGKVFKIGEPTYSCRECGMDPTCVLCVNCFKQSAH RYHKYKMSTSGGGGCCDCGDEEAWKKDHYCEEHLRGKENSSSSTIITDAIKERCEIAF VAILTFCVNYLEIETNASLKCLDGDGIGKDYFCTVLYNDESHTFDQVIQTLTKIAKVQ HKEATEIVASIDREGRAVVKCDSFNECAALKEAIEKQSVPPNMAMPNSRANQSLRVNV LHIRAVACQQFALQLLTWFQEFLVRHSTFRQIFARIVMDKKAPYCIRHILEYDVALWK TARTCWHRLLISGMLMEYDNKMALAQEFSKNYATIVQDFISDDHDHSYSIVSLSVQLF TVPSIAHYLIAQEGIFYKLLHTFYHKSIEDYMQNKTLHFSKNVSTLSHFKRAAYILYD LRYILSFKPDFWTQELREGFNEGCKALLRVLNAMQGMESVTRQTGQHMDYEPEWECAF NLHIKLANTISLVLEWAATDKEVLEKLCVMVMRYLMQNTFIIGQAKKEQRTVENHIAE CLIYDVSSKPVSIHLPLSRFFAGIYLHLGQYGLNFDMISSLKRTPEEIMEPILCTQVM MAQVHSGMWRRNGYSLLHQLYFYRNVRCRTEMLDRDIVGMQIGASLIESNEYLIHLLN KFNLIEWIQPDYEDSNVEPTTDDDFIRQLSMIDEFLELLIVIIGERFMPGVAHVTEED RTKKEIMQLLCIKSYSHSELNRALPDSNNDTALEDVIDSVAVFKKPQKTDAKGVYELR EELYDGFNMYFYHYTKEDKSKSEETQRLRRKNKGELVCCPPPKLPKLTDSFVTIANLL QCDVMMHLMKTILERALDLKRKSFQENHLQKILFLIGYGLQEEESNNYPFLSFYQWAH RYKLLPKLEELSRSARVEAHRDFILWTIKKFKDLQAKQTTAEGLERMQSDDLEPTSSA HDDNGSGDIAATTLTSAEQEKREKEERARLAAERRAKILAQMQSAQNKFMTSNAEMFA SANDVASDANAGTAMEWQDENLEGAVAYNSTACLGVERRLQQPEEEKYKCILCFEEAV VSKDGPTLVYSAFVQKSKVLKPESNYAYSVHTSSCGHVMHVNCWQEYYNNEESKEIRR PRRHPLQVFPSSPSTEFQCPYCRCLSNTVLPLTPPLSKYSVPNVFHAGDEMFPIDLWI EGIRVFSDKLNNLILTEDPDLWSFHLPEWLPTLKEAHIPIDPKQFEKMAQPTQRGELP VSWINFVQHYMKSLKRNEDEGLLNMWHTCVYTVQALEVYLRSVGKPLKDEMSIRHQSC LSGLIRACCLYSGNLTQTDVKSLIKPVAELLNVVFKHNGDSVLEWNCFSKMVSTIMMV PNILFARVRGASVVANGSLMDFYTLQVFLLANVVKSIVLFEQTAEGLMDIEEEDYVAL SDKQLENISIFFNKYNIQARQKAKMAAAAAAAQTQQPKKSVSKESSQEEQSTTVAAES AASDDIDAGMTDVTQQQQQQQSTIAEPKPELLSPQLVTALLDHVKMEMREFLRCSCLF FHFVTDVEFPDSLATSESDTFENMCKYLGLNSQLESYFDNATPYATIMEMFASHHDIT NLDVVTTKIKMTDDPLVIMPCNRTVPQLVNLPEDYSDLINSVSDFSCPNNEREEMKTP TMCLMCGEILCAQSYCCQPDLDSRNVGACTYHAYFCGAEIAPFLRIRDCQIVYLGKNK GCFVQPPYLDDYGETDQGLRRGNPLRLCPARYSKIHLTWLAHGLHEEIARLNDHSSAI TTQWHHM" polyA_site 6437 /gene="LOC106082887" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agagtgagaa aaatgactgc ctaagaagaa acaaataata gaaaattaca aattgaaaaa 61 gtgaaaatac aaagacacaa gaaaaatttg aaattagtta accacaaaat aaagcgaaaa 121 catttcaaat gattagcagc gcacaatttc tgtacagagc tgttgccatt tgctagtgtc 181 tcaagacata cacatacaca acaacgatat aagaagaaga agaaccaact ggaagcggtc 241 gtaaaaaatc tcacaactgg atagcttccg gcaacattct atagcagcat caacaataac 301 aacaaccata actctttaaa acgccatcaa gctccgaaat ccatcatttt catcgtctgt 361 cgcacgcatc aattgtgatc tctagcctaa agcatggata gctatgagga tgaggttgtt 421 gcaccaacaa ccacatcatc ggaatcgcct ctcaaagatt ggcgtgtaaa atttttagct 481 gacaccttgg ataaaaatga tttcatagaa ttctttcaaa aagaatccag gcagtatttt 541 gaacacgata ccagtggtgc ggattctgcc cgaagctgga gagatgctct atccgaaatt 601 aagaatctta agaataataa acgtggctgc gaaggttcct taaaatgcat gttcaaagag 661 gctgctgcca aagaaggcat tatcgatgtc cttatggaat tcatattggg cgacaatccc 721 aatattgtgt tggagaaatt acgccttgag ggtgccacct cggcggtgtg tggcaaagtt 781 ttcaaaattg gcgaacccac gtacagctgt cgtgagtgcg gcatggatcc cacctgtgta 841 ttgtgtgtga attgttttaa acaatcggca catcgttatc acaaatataa gatgtccacc 901 tctggtggtg gtggatgttg cgattgcggt gatgaggagg cctggaagaa ggatcattat 961 tgcgaagaac acttgcgggg caaggaaaac agttcaagca gtaccattat aacagatgcc 1021 attaaagaac gctgtgaaat tgcctttgtg gccattctaa cattttgtgt caactacttg 1081 gaaatcgaga caaatgctag tcttaaatgc ctcgatgggg atggcattgg caaggattat 1141 ttttgcaccg tcctctacaa cgatgaatcc catacatttg atcaggtcat acagactctg 1201 acgaaaattg ctaaagttca acacaaggaa gctaccgaaa tcgtggccag tattgatcga 1261 gaaggacgcg ctgtggttaa atgtgatagt ttcaacgaat gtgctgccct caaggaggca 1321 attgagaagc agtcggtgcc gcccaatatg gctatgccaa atagtagggc caatcaatcg 1381 cttcgcgtca atgtgttgca tatacgcgct gtggcctgcc agcaatttgc gttgcagttg 1441 ctgacatggt tccaagagtt tcttgtgcgt cacagtactt tccgccaaat attcgcccgc 1501 attgttatgg acaagaaggc gccctattgc atacgccaca tattggaata cgatgtggcc 1561 ttgtggaaga ccgcccgtac ttgttggcac cgtttgttga tttccggcat gctcatggag 1621 tacgacaaca aaatggcctt ggcccaagag ttctccaaaa actatgctac cattgtgcaa 1681 gacttcataa gcgatgacca tgaccattcg tattcgattg tgtcacttag tgtccaactt 1741 ttcacagtgc caagtatagc ccattatttg atagctcaag agggtatctt ctacaagttg 1801 ttgcacacct tctaccacaa gtccattgag gattatatgc aaaacaagac attgcacttc 1861 tccaagaatg tctcaacact gagccatttc aagcgggccg cctatatact ctacgattta 1921 cgctacatac ttagttttaa gcccgacttt tggacccaag aactgcgaga aggcttcaat 1981 gaaggctgta aggctctact gcgtgtccta aatgccatgc agggcatgga atcggtgacg 2041 cgtcaaacgg gccagcacat ggactatgag cccgagtggg agtgtgcatt caatttgcac 2101 ataaagttgg ccaacaccat ttcgctggtg ttggaatggg ctgccacaga caaggaggtg 2161 ttggagaaac tctgtgtcat ggtaatgcgt tatttgatgc agaatacctt tattattggc 2221 caagccaaga aggagcagcg cacagtggaa aatcacattg ctgagtgttt gatttatgat 2281 gtctcttcca agccggtgtc catacattta cccttgtccc gtttctttgc gggcatctat 2341 ttgcatttgg gccaatacgg tttgaacttt gatatgatta gcagtttgaa gcgaacaccc 2401 gaagagataa tggagcccat tttatgcacc caggttatga tggcccaggt tcattctggc 2461 atgtggcgtc gtaatggcta ctccctgctg catcagttgt atttctaccg caatgtacgt 2521 tgccgcactg aaatgttgga tcgtgatatt gtgggcatgc aaattggcgc ttcgttgatc 2581 gaaagcaatg agtatctcat ccatttgctt aacaaattca atctgattga gtggatacag 2641 ccagactatg aagattccaa tgtggaacca accaccgatg atgatttcat acgacaactc 2701 tcgatgattg atgagttcct tgaactattg attgtcatca ttggtgagcg ttttatgccc 2761 ggtgtagccc atgtcaccga agaggatcgc accaagaagg aaattatgca gttgttgtgc 2821 attaaatcgt actcgcattc tgaactgaat cgtgctctgc ccgattcgaa taacgacact 2881 gccctagagg atgttattga ttcggtggct gttttcaaga aaccccaaaa gaccgatgcc 2941 aagggtgttt atgagttgcg ggaggaactt tacgatggct tcaacatgta cttctaccac 3001 tacaccaagg aggataaatc aaagtcagaa gagacacaac gattgcgtcg caagaacaag 3061 ggtgaattgg tgtgttgtcc accgccgaaa ttgccaaagc ttacggatag ttttgtgaca 3121 attgccaatt tgttgcaatg tgatgtcatg atgcacctta tgaaaaccat tttggaaaga 3181 gcattagact tgaagaggaa gagtttccaa gaaaatcatt tgcaaaagat tctattcctc 3241 attggttatg gcttgcaaga agaggaatcc aacaactatc ccttcttgtc gttttatcag 3301 tgggcccata gatacaaact tttgccaaag ctagaagagt tgtcacgtag tgccagggtt 3361 gaagctcatc gcgatttcat tttatggaca attaaaaaat tcaaagattt acaagccaaa 3421 caaacaacag ccgaaggtct cgaacgcatg caaagcgatg atcttgaacc aacatcgtcg 3481 gcgcatgatg ataatggcag cggtgatatt gctgcaacaa cattaacctc agccgagcag 3541 gagaaacgtg agaaagagga gagggcacgt ttagcggctg agcggcgtgc caagattctg 3601 gcacaaatgc aatcagctca aaataagttc atgacctcca atgcggaaat gtttgccagt 3661 gccaatgatg tggccagtga tgccaatgcc ggtacggcca tggaatggca agatgaaaat 3721 ctagaagggg cagtggccta taattccacc gcttgtttgg gtgtggaacg aaggctgcaa 3781 caacccgaag aggagaaata taagtgtata ttgtgttttg aagaggcagt ggttagcaaa 3841 gatggtccca ctttggtcta ctcggccttt gtgcaaaagt ccaaggttct caaaccagag 3901 tccaattacg cttactccgt acacaccagc agttgtggcc atgtcatgca tgtcaactgc 3961 tggcaggaat actacaacaa tgaggagtcc aaggaaatca gacgacccag acgtcatccc 4021 ttgcaagttt tcccctcatc accgagcacc gagtttcagt gcccctattg ccgttgtctc 4081 agcaatactg tgctgcctct aacgcctccg ctctccaagt attcggtacc aaatgtattc 4141 catgccggcg acgaaatgtt ccccattgat ttgtggatcg aaggcattcg tgtgtttagt 4201 gataaactta ataatctcat attgaccgaa gatcccgacc tatggagttt ccatttgccc 4261 gaatggctgc ccactctcaa agaggcccac atacccatag atcccaaaca atttgaaaaa 4321 atggcccagc caacacagcg tggtgaattg ccagttagtt ggattaattt cgtacaacac 4381 tacatgaaat cactgaaacg caacgaggac gaaggtctgc tgaatatgtg gcacacttgt 4441 gtgtacacag tgcaagcttt ggaagtgtat ctgcgatctg tgggtaaacc cttgaaggat 4501 gaaatgtcca tacgtcacca gagttgtttg agtggcctaa tacgggcttg ttgtctgtac 4561 agtggtaatt tgacacaaac cgatgttaag agcttaatca aacctgtggc cgaactcttg 4621 aatgtggtgt tcaaacataa tggcgattca gtgttggaat ggaactgctt cagcaaaatg 4681 gtatccacaa ttatgatggt accgaatatc ctcttcgcac gtgtccgagg agcttcggtt 4741 gttgccaatg gcagcttaat ggacttttat acgctacaag ttttcctatt ggccaatgtt 4801 gtaaaatcca tagttctgtt tgagcagaca gccgaaggcc taatggacat tgaggaagaa 4861 gattatgtgg cgcttagtga taaacaattg gaaaatattt cgatattctt taacaaatac 4921 aacatacagg ccaggcaaaa ggctaagatg gcagcggcgg cggcggcggc gcagacacag 4981 cagccaaaga agtcagttag taaagagagc tcgcaggaag agcaatcaac aacagttgca 5041 gcagagtctg cggcaagcga tgatatcgat gccggcatga cagatgtcac acaacaacaa 5101 cagcagcaac agtcaacaat tgccgaacct aaacccgaat tgttaagccc gcagttggtg 5161 acagccctgc tggatcatgt caaaatggaa atgcgtgaat tcctgcgttg ttcctgtctc 5221 ttcttccact ttgtcaccga tgtggaattc cccgatagtc tggccaccag cgaaagtgat 5281 acctttgaga atatgtgtaa atatctgggc ctcaacagcc aactggagtc gtacttcgac 5341 aatgccaccc cctatgccac aattatggaa atgtttgcct cgcatcatga tataaccaac 5401 ttggatgtgg tgaccacaaa aatcaaaatg accgatgatc ccctggtgat aatgccctgc 5461 aatcgtaccg tgccgcaact cgtcaatctg cccgaggact atagtgatct catcaacagt 5521 gtctcggact ttagttgtcc caacaatgag cgcgaggaga tgaagacccc caccatgtgt 5581 ctgatgtgtg gggagatctt gtgtgcccaa tcgtattgct gccagcccga tttggatagc 5641 cgcaatgtgg gtgcctgcac ctatcatgcg tatttctgtg gagcggaaat agcacccttc 5701 ctgcgtatac gagattgcca gattgtgtat ttgggcaaga ataagggatg ctttgtgcag 5761 cccccctatc tggatgacta tggcgagacg gatcaaggcc taaggcgtgg caatcccctg 5821 cgtttgtgtc cagcccgcta tagtaaaata catctgacat ggttggccca tgggctgcat 5881 gaggagatag cgcgtctgaa tgatcactcg tcggccataa ccacacagtg gcatcacatg 5941 tagttgcagt tgcagttgcg ctgcaagtca aagtcaaatc atcattatta taatactatt 6001 attaataatt attaaattaa ttaaatgtcg tcgcacctat gcaaaacaaa caaaaacaaa 6061 acggaagtaa aaaccaacaa caacaacaac aataacaaca tagagtatat actaaacaaa 6121 caaaacaaca acaacagcag ttaatgtgat ttaaattaaa aaaaaaacaa ataaacaaaa 6181 atagataaca acaacaaaac gaaacgaaag ctaatgcaat atctatgtta attcacctcc 6241 tccaggctag ggatatgctg tatgaagaag aagaaaaaga aggaggaggt ttacaaacaa 6301 attaaacaaa gccctccttt ctctatctct ctctctctca ctctcatact ctcataaatg 6361 aaaacacaac actcgtaatg aatgtattaa actcaacaca ctcacacaaa gtaaagatta 6421 gaaaaaaaaa acaaaaa