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LOCUS XM_059368235 6580 bp mRNA linear INV 02-SEP-2023 (LOC106082887), transcript variant X2, mRNA. ACCESSION XM_059368235 VERSION XM_059368235.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6580 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6580 /gene="LOC106082887" /note="E3 ubiquitin-protein ligase UBR1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106082887" CDS 537..6086 /gene="LOC106082887" /codon_start=1 /product="E3 ubiquitin-protein ligase UBR1 isoform X1" /protein_id="XP_059224218.1" /db_xref="GeneID:106082887" /translation="MDSYEDEVVAPTTTSSESPLKDWRVKFLADTLDKNDFIEFFQKE SRQYFEHDTSGADSARSWRDALSEIKNLKNNKRGCEGSLKCMFKEAAAKEGIIDVLME FILGDNPNIVLEKLRLEGATSAVCGKVFKIGEPTYSCRECGMDPTCVLCVNCFKQSAH RYHKYKMSTSGGGGCCDCGDEEAWKKDHYCEEHLRGKENSSSSTIITDAIKERCEIAF VAILTFCVNYLEIETNASLKCLDGDGIGKDYFCTVLYNDESHTFDQVIQTLTKIAKVQ HKEATEIVASIDREGRAVVKCDSFNECAALKEAIEKQSVPPNMAMPNSRANQSLRVNV LHIRAVACQQFALQLLTWFQEFLVRHSTFRQIFARIVMDKKAPYCIRHILEYDVALWK TARTCWHRLLISGMLMEYDNKMALAQEFSKNYATIVQDFISDDHDHSYSIVSLSVQLF TVPSIAHYLIAQEGIFYKLLHTFYHKSIEDYMQNKTLHFSKNVSTLSHFKRAAYILYD LRYILSFKPDFWTQELREGFNEGCKALLRVLNAMQGMESVTRQTGQHMDYEPEWECAF NLHIKLANTISLVLEWAATDKEVLEKLCVMVMRYLMQNTFIIGQAKKEQRTVENHIAE CLIYDVSSKPVSIHLPLSRFFAGIYLHLGQYGLNFDMISSLKRTPEEIMEPILCTQVM MAQVHSGMWRRNGYSLLHQLYFYRNVRCRTEMLDRDIVGMQIGASLIESNEYLIHLLN KFNLIEWIQPDYEDSNVEPTTDDDFIRQLSMIDEFLELLIVIIGERFMPGVAHVTEED RTKKEIMQLLCIKSYSHSELNRALPDSNNDTALEDVIDSVAVFKKPQKTDAKGVYELR EELYDGFNMYFYHYTKEDKSKSEETQRLRRKNKGELVCCPPPKLPKLTDSFVTIANLL QCDVMMHLMKTILERALDLKRKSFQENHLQKILFLIGYGLQEEESNNYPFLSFYQWAH RYKLLPKLEELSRSARVEAHRDFILWTIKKFKDLQAKQTTAEGLERMQSDDLEPTSSA HDDNGSGDIAATTLTSAEQEKREKEERARLAAERRAKILAQMQSAQNKFMTSNAEMFA SANDVASDANAGTAMEWQDENLEGAVAYNSTACLGVERRLQQPEEEKYKCILCFEEAV VSKDGPTLVYSAFVQKSKVLKPESNYAYSVHTSSCGHVMHVNCWQEYYNNEESKEIRR PRRHPLQVFPSSPSTEFQCPYCRCLSNTVLPLTPPLSKYSVPNVFHAGDEMFPIDLWI EGIRVFSDKLNNLILTEDPDLWSFHLPEWLPTLKEAHIPIDPKQFEKMAQPTQRGELP VSWINFVQHYMKSLKRNEDEGLLNMWHTCVYTVQALEVYLRSVGKPLKDEMSIRHQSC LSGLIRACCLYSGNLTQTDVKSLIKPVAELLNVVFKHNGDSVLEWNCFSKMVSTIMMV PNILFARVRGASVVANGSLMDFYTLQVFLLANVVKSIVLFEQTAEGLMDIEEEDYVAL SDKQLENISIFFNKYNIQARQKAKMAAAAAAAQTQQPKKSVSKESSQEEQSTTVAAES AASDDIDAGMTDVTQQQQQQQSTIAEPKPELLSPQLVTALLDHVKMEMREFLRCSCLF FHFVTDVEFPDSLATSESDTFENMCKYLGLNSQLESYFDNATPYATIMEMFASHHDIT NLDVVTTKIKMTDDPLVIMPCNRTVPQLVNLPEDYSDLINSVSDFSCPNNEREEMKTP TMCLMCGEILCAQSYCCQPDLDSRNVGACTYHAYFCGAEIAPFLRIRDCQIVYLGKNK GCFVQPPYLDDYGETDQGLRRGNPLRLCPARYSKIHLTWLAHGLHEEIARLNDHSSAI TTQWHHM" polyA_site 6580 /gene="LOC106082887" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attttgagct tcaacttata aagaagtgtt gtgtccgtaa tcgcgatttt ttccaataag 61 agaaataact ttttttttgt atatattgcg atagttgttt cgcaatataa atttatacaa 121 aaaaaaaaaa aaaatagaaa ggaaaaatac agaaagagac tgcctaagaa gaaacaaata 181 atagaaaatt acaaattgaa aaagtgaaaa tacaaagaca caagaaaaat ttgaaattag 241 ttaaccacaa aataaagcga aaacatttca aatgattagc agcgcacaat ttctgtacag 301 agctgttgcc atttgctagt gtctcaagac atacacatac acaacaacga tataagaaga 361 agaagaacca actggaagcg gtcgtaaaaa atctcacaac tggatagctt ccggcaacat 421 tctatagcag catcaacaat aacaacaacc ataactcttt aaaacgccat caagctccga 481 aatccatcat tttcatcgtc tgtcgcacgc atcaattgtg atctctagcc taaagcatgg 541 atagctatga ggatgaggtt gttgcaccaa caaccacatc atcggaatcg cctctcaaag 601 attggcgtgt aaaattttta gctgacacct tggataaaaa tgatttcata gaattctttc 661 aaaaagaatc caggcagtat tttgaacacg ataccagtgg tgcggattct gcccgaagct 721 ggagagatgc tctatccgaa attaagaatc ttaagaataa taaacgtggc tgcgaaggtt 781 ccttaaaatg catgttcaaa gaggctgctg ccaaagaagg cattatcgat gtccttatgg 841 aattcatatt gggcgacaat cccaatattg tgttggagaa attacgcctt gagggtgcca 901 cctcggcggt gtgtggcaaa gttttcaaaa ttggcgaacc cacgtacagc tgtcgtgagt 961 gcggcatgga tcccacctgt gtattgtgtg tgaattgttt taaacaatcg gcacatcgtt 1021 atcacaaata taagatgtcc acctctggtg gtggtggatg ttgcgattgc ggtgatgagg 1081 aggcctggaa gaaggatcat tattgcgaag aacacttgcg gggcaaggaa aacagttcaa 1141 gcagtaccat tataacagat gccattaaag aacgctgtga aattgccttt gtggccattc 1201 taacattttg tgtcaactac ttggaaatcg agacaaatgc tagtcttaaa tgcctcgatg 1261 gggatggcat tggcaaggat tatttttgca ccgtcctcta caacgatgaa tcccatacat 1321 ttgatcaggt catacagact ctgacgaaaa ttgctaaagt tcaacacaag gaagctaccg 1381 aaatcgtggc cagtattgat cgagaaggac gcgctgtggt taaatgtgat agtttcaacg 1441 aatgtgctgc cctcaaggag gcaattgaga agcagtcggt gccgcccaat atggctatgc 1501 caaatagtag ggccaatcaa tcgcttcgcg tcaatgtgtt gcatatacgc gctgtggcct 1561 gccagcaatt tgcgttgcag ttgctgacat ggttccaaga gtttcttgtg cgtcacagta 1621 ctttccgcca aatattcgcc cgcattgtta tggacaagaa ggcgccctat tgcatacgcc 1681 acatattgga atacgatgtg gccttgtgga agaccgcccg tacttgttgg caccgtttgt 1741 tgatttccgg catgctcatg gagtacgaca acaaaatggc cttggcccaa gagttctcca 1801 aaaactatgc taccattgtg caagacttca taagcgatga ccatgaccat tcgtattcga 1861 ttgtgtcact tagtgtccaa cttttcacag tgccaagtat agcccattat ttgatagctc 1921 aagagggtat cttctacaag ttgttgcaca ccttctacca caagtccatt gaggattata 1981 tgcaaaacaa gacattgcac ttctccaaga atgtctcaac actgagccat ttcaagcggg 2041 ccgcctatat actctacgat ttacgctaca tacttagttt taagcccgac ttttggaccc 2101 aagaactgcg agaaggcttc aatgaaggct gtaaggctct actgcgtgtc ctaaatgcca 2161 tgcagggcat ggaatcggtg acgcgtcaaa cgggccagca catggactat gagcccgagt 2221 gggagtgtgc attcaatttg cacataaagt tggccaacac catttcgctg gtgttggaat 2281 gggctgccac agacaaggag gtgttggaga aactctgtgt catggtaatg cgttatttga 2341 tgcagaatac ctttattatt ggccaagcca agaaggagca gcgcacagtg gaaaatcaca 2401 ttgctgagtg tttgatttat gatgtctctt ccaagccggt gtccatacat ttacccttgt 2461 cccgtttctt tgcgggcatc tatttgcatt tgggccaata cggtttgaac tttgatatga 2521 ttagcagttt gaagcgaaca cccgaagaga taatggagcc cattttatgc acccaggtta 2581 tgatggccca ggttcattct ggcatgtggc gtcgtaatgg ctactccctg ctgcatcagt 2641 tgtatttcta ccgcaatgta cgttgccgca ctgaaatgtt ggatcgtgat attgtgggca 2701 tgcaaattgg cgcttcgttg atcgaaagca atgagtatct catccatttg cttaacaaat 2761 tcaatctgat tgagtggata cagccagact atgaagattc caatgtggaa ccaaccaccg 2821 atgatgattt catacgacaa ctctcgatga ttgatgagtt ccttgaacta ttgattgtca 2881 tcattggtga gcgttttatg cccggtgtag cccatgtcac cgaagaggat cgcaccaaga 2941 aggaaattat gcagttgttg tgcattaaat cgtactcgca ttctgaactg aatcgtgctc 3001 tgcccgattc gaataacgac actgccctag aggatgttat tgattcggtg gctgttttca 3061 agaaacccca aaagaccgat gccaagggtg tttatgagtt gcgggaggaa ctttacgatg 3121 gcttcaacat gtacttctac cactacacca aggaggataa atcaaagtca gaagagacac 3181 aacgattgcg tcgcaagaac aagggtgaat tggtgtgttg tccaccgccg aaattgccaa 3241 agcttacgga tagttttgtg acaattgcca atttgttgca atgtgatgtc atgatgcacc 3301 ttatgaaaac cattttggaa agagcattag acttgaagag gaagagtttc caagaaaatc 3361 atttgcaaaa gattctattc ctcattggtt atggcttgca agaagaggaa tccaacaact 3421 atcccttctt gtcgttttat cagtgggccc atagatacaa acttttgcca aagctagaag 3481 agttgtcacg tagtgccagg gttgaagctc atcgcgattt cattttatgg acaattaaaa 3541 aattcaaaga tttacaagcc aaacaaacaa cagccgaagg tctcgaacgc atgcaaagcg 3601 atgatcttga accaacatcg tcggcgcatg atgataatgg cagcggtgat attgctgcaa 3661 caacattaac ctcagccgag caggagaaac gtgagaaaga ggagagggca cgtttagcgg 3721 ctgagcggcg tgccaagatt ctggcacaaa tgcaatcagc tcaaaataag ttcatgacct 3781 ccaatgcgga aatgtttgcc agtgccaatg atgtggccag tgatgccaat gccggtacgg 3841 ccatggaatg gcaagatgaa aatctagaag gggcagtggc ctataattcc accgcttgtt 3901 tgggtgtgga acgaaggctg caacaacccg aagaggagaa atataagtgt atattgtgtt 3961 ttgaagaggc agtggttagc aaagatggtc ccactttggt ctactcggcc tttgtgcaaa 4021 agtccaaggt tctcaaacca gagtccaatt acgcttactc cgtacacacc agcagttgtg 4081 gccatgtcat gcatgtcaac tgctggcagg aatactacaa caatgaggag tccaaggaaa 4141 tcagacgacc cagacgtcat cccttgcaag ttttcccctc atcaccgagc accgagtttc 4201 agtgccccta ttgccgttgt ctcagcaata ctgtgctgcc tctaacgcct ccgctctcca 4261 agtattcggt accaaatgta ttccatgccg gcgacgaaat gttccccatt gatttgtgga 4321 tcgaaggcat tcgtgtgttt agtgataaac ttaataatct catattgacc gaagatcccg 4381 acctatggag tttccatttg cccgaatggc tgcccactct caaagaggcc cacataccca 4441 tagatcccaa acaatttgaa aaaatggccc agccaacaca gcgtggtgaa ttgccagtta 4501 gttggattaa tttcgtacaa cactacatga aatcactgaa acgcaacgag gacgaaggtc 4561 tgctgaatat gtggcacact tgtgtgtaca cagtgcaagc tttggaagtg tatctgcgat 4621 ctgtgggtaa acccttgaag gatgaaatgt ccatacgtca ccagagttgt ttgagtggcc 4681 taatacgggc ttgttgtctg tacagtggta atttgacaca aaccgatgtt aagagcttaa 4741 tcaaacctgt ggccgaactc ttgaatgtgg tgttcaaaca taatggcgat tcagtgttgg 4801 aatggaactg cttcagcaaa atggtatcca caattatgat ggtaccgaat atcctcttcg 4861 cacgtgtccg aggagcttcg gttgttgcca atggcagctt aatggacttt tatacgctac 4921 aagttttcct attggccaat gttgtaaaat ccatagttct gtttgagcag acagccgaag 4981 gcctaatgga cattgaggaa gaagattatg tggcgcttag tgataaacaa ttggaaaata 5041 tttcgatatt ctttaacaaa tacaacatac aggccaggca aaaggctaag atggcagcgg 5101 cggcggcggc ggcgcagaca cagcagccaa agaagtcagt tagtaaagag agctcgcagg 5161 aagagcaatc aacaacagtt gcagcagagt ctgcggcaag cgatgatatc gatgccggca 5221 tgacagatgt cacacaacaa caacagcagc aacagtcaac aattgccgaa cctaaacccg 5281 aattgttaag cccgcagttg gtgacagccc tgctggatca tgtcaaaatg gaaatgcgtg 5341 aattcctgcg ttgttcctgt ctcttcttcc actttgtcac cgatgtggaa ttccccgata 5401 gtctggccac cagcgaaagt gatacctttg agaatatgtg taaatatctg ggcctcaaca 5461 gccaactgga gtcgtacttc gacaatgcca ccccctatgc cacaattatg gaaatgtttg 5521 cctcgcatca tgatataacc aacttggatg tggtgaccac aaaaatcaaa atgaccgatg 5581 atcccctggt gataatgccc tgcaatcgta ccgtgccgca actcgtcaat ctgcccgagg 5641 actatagtga tctcatcaac agtgtctcgg actttagttg tcccaacaat gagcgcgagg 5701 agatgaagac ccccaccatg tgtctgatgt gtggggagat cttgtgtgcc caatcgtatt 5761 gctgccagcc cgatttggat agccgcaatg tgggtgcctg cacctatcat gcgtatttct 5821 gtggagcgga aatagcaccc ttcctgcgta tacgagattg ccagattgtg tatttgggca 5881 agaataaggg atgctttgtg cagcccccct atctggatga ctatggcgag acggatcaag 5941 gcctaaggcg tggcaatccc ctgcgtttgt gtccagcccg ctatagtaaa atacatctga 6001 catggttggc ccatgggctg catgaggaga tagcgcgtct gaatgatcac tcgtcggcca 6061 taaccacaca gtggcatcac atgtagttgc agttgcagtt gcgctgcaag tcaaagtcaa 6121 atcatcatta ttataatact attattaata attattaaat taattaaatg tcgtcgcacc 6181 tatgcaaaac aaacaaaaac aaaacggaag taaaaaccaa caacaacaac aacaataaca 6241 acatagagta tatactaaac aaacaaaaca acaacaacag cagttaatgt gatttaaatt 6301 aaaaaaaaaa caaataaaca aaaatagata acaacaacaa aacgaaacga aagctaatgc 6361 aatatctatg ttaattcacc tcctccaggc tagggatatg ctgtatgaag aagaagaaaa 6421 agaaggagga ggtttacaaa caaattaaac aaagccctcc tttctctatc tctctctctc 6481 tcactctcat actctcataa atgaaaacac aacactcgta atgaatgtat taaactcaac 6541 acactcacac aaagtaaaga ttagaaaaaa aaaacaaaaa