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LOCUS XM_059367982 4717 bp mRNA linear INV 02-SEP-2023 11 (LOC106085029), transcript variant X2, mRNA. ACCESSION XM_059367982 VERSION XM_059367982.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4717 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4717 /gene="LOC106085029" /note="thyroid receptor-interacting protein 11; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106085029" CDS 31..4464 /gene="LOC106085029" /codon_start=1 /product="thyroid receptor-interacting protein 11 isoform X2" /protein_id="XP_059223965.1" /db_xref="GeneID:106085029" /translation="MLILEKKIVFVVPIPAKRKIVALRKQIETLLQNQISDSGGGTGR ASGSGSVVGGGGGASGSGRTSKTPTDNNNATNLEDSWCWEPDNAKNDNDHSSETSSGN GNEIVNITLEEVPLGATAKPGGKTKIHRLGGGGGASADQQKRIRELEEENRQLNSSLE ELDTQHNVAMQNMLELKTELQEKLNKVSHDHEALKKAQEDKFIATELEMAKLRRQQEA SQNEKLIVLTENQELRQKLNESSEEVKRALEEMADLQSLLEKKSHDNQELILRIKEVT QEAQQDKEDLNQKLDIMAQELEQLKMSKAKKTSESSNSSSTGKQSEDEFIVVTEKDAN SSTAVTPPSQEGLKDHMVELENRVSELTLENGSLSLKLQDREMEKEIALKALKENMKA LQEENDELNEKLRMSLMDMEDQQLKIADLKEKAADALIAQEQLKALSEEKLKIADEIA KMKESIKNSLELEKRLLISEQEKEALQVELQSVKNSMGRINGLEQKIQTLTYENQQLK LNAEAETETLNNSNELEQKLKEMSVENDSLKTELERLNEGGFSRSSLSSKKQCVTDLD EDDDDDSFSLDRLKNLLKVFSSAEDPKDLNVEEHEKFYRNLREKLTKIDSLQRDLAHM SAEVMDLQDSKLMWDHEKKTLEADISQYILQCDELMKNNEILLNELENYKRNKLETIH ENNEENVVQLETQLDECNKLNRTLEQEYIELNEKIEELEKENQALNAKLRTAQQQQES LLTKEKDLNLQVETLELEKCNLLLKFNDFDCQREQSARETKELLEYREKCLDLEKQLS SLAKDHADLVNALQKQKDTLRENIQAKEEAEKLVRMHEMTMRTKVEVDASAKQELEQK LKTSQSEAQKYQHELMAKNIVCDSLKEEIKVLQTYVQGAETLANEKLLLEEKLMEKEQ HIKEFNEKLQQVAEEKQTLSKQLEEITTEKEKLETSSSLAGNETKTEDINHISRIAEL EAKLLATADLQNSLDTLNFEKQELIKALQQKHAENMQYYMEIQRLTPLVNQTATQSQG PCEKCPQLEQTLSELRKQQEKFQDQINFLKEKSDILTTNLLTEQTNQKLVQEEKADVM EQNATLRKDVERLRAHLLEIEDMHTQETVEMQKELDETKARMNALAMEVSKSSNAYTS ASIRANQHAETLQAQYALVVQQRDQLLHKLSQAEDRESKNQAALTNLQCALEQFQNDK ENDIKLSTQRLRKELQQHVDKESQLHLDIEQLQQQLADATQGLNAAARLSDQLESCQQ TINVLREEVETLKHQNLTLEQKLTSAESSQSDKIEKTLIKSLLIGYVVSTNPNDKQQI LRMISSVLDFNQGETDKVGLNKQQGGWLGSLLGGGGGGSSGSHSKENLVQAFVQFLEQ ESQPQTQQQQMPNLLNITQHSSSQGSTTGATGATPATSRRSSNITNPALSQQSSGGNA TATAHNTPVPIQPLLLTSTVLDDFSPTRNSSSILKDILSDS" polyA_site 4717 /gene="LOC106085029" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaacattgaa gagcgagttg tgtaaagtaa atgttaattc tcgaaaaaaa aattgtgttt 61 gttgttccca ttccagcaaa aagaaagatt gtagcacttc gcaaacaaat cgaaacacta 121 ttacaaaatc aaattagcga ctcgggaggc ggcactggca gagcaagtgg cagtggcagt 181 gttgttggag gcggtggcgg cgcttcaggc agtggacgca catcaaaaac gcccaccgat 241 aacaataatg ccacaaattt ggaagacagt tggtgctggg agccagataa tgccaaaaat 301 gacaatgatc acagttcgga aacctcgtcg ggtaatggca atgaaatcgt caacattacc 361 ttggaggagg taccactggg cgccaccgcc aagccagggg ggaaaaccaa aatccatcgc 421 ctgggtggtg gtggcggagc ctctgctgat caacagaagc gcatacgcga gctggaggag 481 gagaatagac agctgaatag ctctctggaa gagttggata cccaacacaa tgtggccatg 541 caaaatatgt tggagctaaa gacagagctt caggaaaagc tcaataaagt ctcacatgac 601 cacgaagctt tgaagaaagc tcaagaggat aaattcatag ccaccgaatt ggaaatggct 661 aagctgagaa ggcagcaaga ggcctcgcaa aatgagaagc tcattgtact tactgagaat 721 caagagctac gacaaaagct gaacgaaagc tctgaggagg taaagcgagc cctagaagaa 781 atggccgatt tgcagagctt gttggagaag aagagccacg acaatcagga acttatttta 841 aggattaagg aagtgacgca ggaggcccaa caggacaaag aggatttaaa tcaaaaatta 901 gatatcatgg cccaagaatt ggagcagttg aaaatgagca aagccaaaaa gacctcagag 961 tcctcgaaca gcagctccac gggcaagcaa agtgaggatg agttcatagt ggtcaccgaa 1021 aaggatgcca attcctccac ggcagtcact ccaccttccc aggagggtct taaggatcac 1081 atggttgagc tggagaatcg tgtctctgaa ctgactttgg aaaatggcag cctttcgctc 1141 aagctgcaag atcgtgaaat ggagaaggaa atagccttga aagctttaaa agagaacatg 1201 aaagctctgc aagaggaaaa tgatgagctt aatgagaagc ttagaatgtc cttgatggac 1261 atggaggatc agcaattgaa aatagccgac ttgaaagaga aggcggccga tgccctcata 1321 gcccaagagc aattgaaagc tttaagtgaa gagaagctga aaatagccga tgagatagcc 1381 aagatgaagg agagcattaa gaactccttg gagttggaga aacgtttgct gatctccgag 1441 caagagaagg aggccttgca ggtggaattg caaagcgtta agaactccat ggggcgcatc 1501 aatggcttgg agcagaagat acagacattg acctatgaaa accaacagct caaactcaat 1561 gccgaggctg agactgagac tctcaacaac agcaatgagt tggagcaaaa gctcaaggag 1621 atgagtgtgg agaatgatag tttgaaaacc gaattggaga ggctcaacga gggaggcttc 1681 tctcgctcct cccttagctc caagaagcaa tgcgtcaccg acttggatga agatgatgat 1741 gatgacagct tctcgctgga taggctaaag aatctactca aagttttctc ctctgctgaa 1801 gatccaaagg atcttaacgt ggaggagcat gaaaaattct atcgaaattt gagagaaaag 1861 ctaacgaaaa tcgactcttt gcaacgcgac ttggcccaca tgtctgccga ggttatggat 1921 ctgcaggaca gcaagctaat gtgggatcat gagaagaaaa ccctggaggc tgatatctcg 1981 caatacattc tacaatgtga tgaactaatg aagaacaacg agatactgct caacgaattg 2041 gagaactaca aacgcaacaa actcgagacc atacacgaaa acaatgaaga gaatgtggtg 2101 caattggaaa cccagctgga tgagtgcaac aagctgaatc gcactctgga gcaggagtac 2161 atagaactga atgagaaaat cgaagagttg gagaaggaga atcaggcgct taacgcaaag 2221 ctgagaacgg cccaacaaca gcaagagagc ctcctaacca aagagaagga tctcaatctg 2281 caggtggaga ctttggagtt ggagaaatgc aatctcttgc tgaaattcaa tgatttcgat 2341 tgccagcgtg agcagagtgc cagagaaacc aaagagctgc tagagtatcg tgagaaatgc 2401 ctggatctgg agaaacaatt gtccagcttg gccaaggatc atgcggactt ggtgaatgcc 2461 ttgcaaaagc aaaaggacac tctcagggag aacatacaag ccaaggagga ggctgaaaaa 2521 ttggttcgca tgcatgaaat gaccatgcga acaaaagtgg aagttgatgc ttcggcaaaa 2581 caggagttgg aacagaaact caaaacctct cagtcagaag cccagaaata tcaacatgaa 2641 ctaatggcca agaatatagt gtgtgatagc ttaaaggaag aaataaaggt tttgcagacc 2701 tatgtccaag gggccgaaac actggccaat gagaaactgc tgctggagga aaaactcatg 2761 gaaaaagagc aacatatcaa ggagtttaac gaaaagttac aacaagttgc agaagaaaaa 2821 caaacattga gcaagcaact ggaggaaatt acaacagaga aggagaaatt ggaaacctct 2881 tcgtccttag ccggtaatga aacgaaaacc gaagacatta accacataag ccgcattgct 2941 gagttggagg ctaaactttt ggccacggca gatttgcaaa attctctgga taccttgaat 3001 ttcgagaaac aagagctcat caaagcccta caacagaaac atgccgaaaa tatgcaatac 3061 tacatggaaa ttcagcgact cactcctttg gtcaatcaaa cggccactca gagtcaggga 3121 ccttgtgaga aatgtcctca attggagcaa accctcagtg agcttaggaa gcaacaggag 3181 aaattccaag accaaatcaa tttccttaaa gaaaaatccg atattctaac caccaaccta 3241 ttgacggagc aaaccaatca gaaattggtg caagaagaga aggccgatgt tatggaacag 3301 aatgccactt tgcgtaaaga tgttgaacgc ttgcgagccc atctattgga aatcgaagat 3361 atgcatactc aggaaacggt ggaaatgcaa aaggaattgg atgagaccaa ggcgagaatg 3421 aatgctctgg caatggaggt gtccaagtcc agtaatgcct acacatcggc aagcattcgt 3481 gccaatcagc atgcggaaac gttacaggcc caatatgctt tggtggtaca acagcgagac 3541 caactgttgc ataaactatc gcaggccgaa gatcgcgaat cgaaaaatca agccgcctta 3601 acgaatttac aatgtgccct ggaacagttt cagaatgaca aagaaaacga tattaaacta 3661 tccactcagc ggctgcgcaa ggaattacaa caacatgtgg acaaggaatc ccaactgcat 3721 ttggatattg aacaattgca acaacagttg gccgatgcca ctcaaggtct gaatgctgcc 3781 gcccgtctct ccgatcaatt ggaatcatgt caacagacca taaatgtctt gcgtgaagag 3841 gtggaaaccc tgaaacacca aaatctgacc ttggaacaga aattaacctc tgcggaatct 3901 agtcaatcgg ataaaattga aaaaaccctc attaagagtc tcttaattgg ctatgtggtc 3961 agcacgaatc ccaatgacaa gcagcagata ttgcgcatga tatcctctgt gttggacttc 4021 aatcaaggtg aaaccgataa agtgggtctc aacaaacagc agggtggttg gttgggttca 4081 ctgttgggag gaggcggagg tggttcatca ggttcccatt caaaggagaa tttagtgcag 4141 gcatttgttc aattccttga acaggaatct caaccacaaa cgcagcaaca acaaatgccc 4201 aatctattga acatcacaca acattcctcc tcgcagggca gcaccaccgg ggcaactggg 4261 gccacaccgg caacctcaag acgctcttca aatatcacaa atcccgcatt atcacaacaa 4321 tcaagtgggg gtaacgccac agcgacagcc cataacacac cagtgcccat acagccttta 4381 ctactcacct ccacggtctt ggatgatttt tcgccaacac gcaactcaag ttccatactg 4441 aaagatattc taagtgattc ctgattattg taatagattt aagttttaaa cctttcctcc 4501 tttgattgat cctttcgctt taattgccct aattgcccaa tgttttgtaa cgacgacaac 4561 gacaattttc cgaaacttga caatttttgt tcaatggcaa tgccagctaa tcattcacac 4621 tacacattgt gtgatttata tatccctgct gtttttttgt caattattta atttttttat 4681 gtataaaatg ttatatcgtc aattgtgcaa ctttttt