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LOCUS XM_059367981 5004 bp mRNA linear INV 02-SEP-2023 11 (LOC106085029), transcript variant X1, mRNA. ACCESSION XM_059367981 VERSION XM_059367981.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5004 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5004 /gene="LOC106085029" /note="thyroid receptor-interacting protein 11; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106085029" CDS 162..4751 /gene="LOC106085029" /codon_start=1 /product="thyroid receptor-interacting protein 11 isoform X1" /protein_id="XP_059223964.1" /db_xref="GeneID:106085029" /translation="MSWLNNSLNTIKGQLTTLANEILEETAGPGDAEYRGGPAPSLDQ KTAIEMLADTQREKEELDKLCTDKEVEIVALRKQIETLLQNQISDSGGGTGRASGSGS VVGGGGGASGSGRTSKTPTDNNNATNLEDSWCWEPDNAKNDNDHSSETSSGNGNEIVN ITLEEVPLGATAKPGGKTKIHRLGGGGGASADQQKRIRELEEENRQLNSSLEELDTQH NVAMQNMLELKTELQEKLNKVSHDHEALKKAQEDKFIATELEMAKLRRQQEASQNEKL IVLTENQELRQKLNESSEEVKRALEEMADLQSLLEKKSHDNQELILRIKEVTQEAQQD KEDLNQKLDIMAQELEQLKMSKAKKTSESSNSSSTGKQSEDEFIVVTEKDANSSTAVT PPSQEGLKDHMVELENRVSELTLENGSLSLKLQDREMEKEIALKALKENMKALQEEND ELNEKLRMSLMDMEDQQLKIADLKEKAADALIAQEQLKALSEEKLKIADEIAKMKESI KNSLELEKRLLISEQEKEALQVELQSVKNSMGRINGLEQKIQTLTYENQQLKLNAEAE TETLNNSNELEQKLKEMSVENDSLKTELERLNEGGFSRSSLSSKKQCVTDLDEDDDDD SFSLDRLKNLLKVFSSAEDPKDLNVEEHEKFYRNLREKLTKIDSLQRDLAHMSAEVMD LQDSKLMWDHEKKTLEADISQYILQCDELMKNNEILLNELENYKRNKLETIHENNEEN VVQLETQLDECNKLNRTLEQEYIELNEKIEELEKENQALNAKLRTAQQQQESLLTKEK DLNLQVETLELEKCNLLLKFNDFDCQREQSARETKELLEYREKCLDLEKQLSSLAKDH ADLVNALQKQKDTLRENIQAKEEAEKLVRMHEMTMRTKVEVDASAKQELEQKLKTSQS EAQKYQHELMAKNIVCDSLKEEIKVLQTYVQGAETLANEKLLLEEKLMEKEQHIKEFN EKLQQVAEEKQTLSKQLEEITTEKEKLETSSSLAGNETKTEDINHISRIAELEAKLLA TADLQNSLDTLNFEKQELIKALQQKHAENMQYYMEIQRLTPLVNQTATQSQGPCEKCP QLEQTLSELRKQQEKFQDQINFLKEKSDILTTNLLTEQTNQKLVQEEKADVMEQNATL RKDVERLRAHLLEIEDMHTQETVEMQKELDETKARMNALAMEVSKSSNAYTSASIRAN QHAETLQAQYALVVQQRDQLLHKLSQAEDRESKNQAALTNLQCALEQFQNDKENDIKL STQRLRKELQQHVDKESQLHLDIEQLQQQLADATQGLNAAARLSDQLESCQQTINVLR EEVETLKHQNLTLEQKLTSAESSQSDKIEKTLIKSLLIGYVVSTNPNDKQQILRMISS VLDFNQGETDKVGLNKQQGGWLGSLLGGGGGGSSGSHSKENLVQAFVQFLEQESQPQT QQQQMPNLLNITQHSSSQGSTTGATGATPATSRRSSNITNPALSQQSSGGNATATAHN TPVPIQPLLLTSTVLDDFSPTRNSSSILKDILSDS" polyA_site 5004 /gene="LOC106085029" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caaacaacaa accaaaataa taaatacaag acgaatattt tgccatcatc atcagaaaaa 61 aaaaagaaaa ttgctgtaat attgttctta aattacaaaa ttcattgaat taattgtcgg 121 gaaatcaatg tgaaagtgcc taaaattgtc attgtgcaaa tatgtcgtgg ttaaataaca 181 gtttaaacac cattaagggt caattaacta cattggccaa tgagattttg gaagagaccg 241 ctggtccggg cgatgcagaa taccgaggtg gtccagcgcc aagtcttgac cagaaaacgg 301 ccattgaaat gttggccgat acccaacggg aaaaggaaga attggataaa ttgtgcaccg 361 acaaagaagt ggagattgta gcacttcgca aacaaatcga aacactatta caaaatcaaa 421 ttagcgactc gggaggcggc actggcagag caagtggcag tggcagtgtt gttggaggcg 481 gtggcggcgc ttcaggcagt ggacgcacat caaaaacgcc caccgataac aataatgcca 541 caaatttgga agacagttgg tgctgggagc cagataatgc caaaaatgac aatgatcaca 601 gttcggaaac ctcgtcgggt aatggcaatg aaatcgtcaa cattaccttg gaggaggtac 661 cactgggcgc caccgccaag ccagggggga aaaccaaaat ccatcgcctg ggtggtggtg 721 gcggagcctc tgctgatcaa cagaagcgca tacgcgagct ggaggaggag aatagacagc 781 tgaatagctc tctggaagag ttggataccc aacacaatgt ggccatgcaa aatatgttgg 841 agctaaagac agagcttcag gaaaagctca ataaagtctc acatgaccac gaagctttga 901 agaaagctca agaggataaa ttcatagcca ccgaattgga aatggctaag ctgagaaggc 961 agcaagaggc ctcgcaaaat gagaagctca ttgtacttac tgagaatcaa gagctacgac 1021 aaaagctgaa cgaaagctct gaggaggtaa agcgagccct agaagaaatg gccgatttgc 1081 agagcttgtt ggagaagaag agccacgaca atcaggaact tattttaagg attaaggaag 1141 tgacgcagga ggcccaacag gacaaagagg atttaaatca aaaattagat atcatggccc 1201 aagaattgga gcagttgaaa atgagcaaag ccaaaaagac ctcagagtcc tcgaacagca 1261 gctccacggg caagcaaagt gaggatgagt tcatagtggt caccgaaaag gatgccaatt 1321 cctccacggc agtcactcca ccttcccagg agggtcttaa ggatcacatg gttgagctgg 1381 agaatcgtgt ctctgaactg actttggaaa atggcagcct ttcgctcaag ctgcaagatc 1441 gtgaaatgga gaaggaaata gccttgaaag ctttaaaaga gaacatgaaa gctctgcaag 1501 aggaaaatga tgagcttaat gagaagctta gaatgtcctt gatggacatg gaggatcagc 1561 aattgaaaat agccgacttg aaagagaagg cggccgatgc cctcatagcc caagagcaat 1621 tgaaagcttt aagtgaagag aagctgaaaa tagccgatga gatagccaag atgaaggaga 1681 gcattaagaa ctccttggag ttggagaaac gtttgctgat ctccgagcaa gagaaggagg 1741 ccttgcaggt ggaattgcaa agcgttaaga actccatggg gcgcatcaat ggcttggagc 1801 agaagataca gacattgacc tatgaaaacc aacagctcaa actcaatgcc gaggctgaga 1861 ctgagactct caacaacagc aatgagttgg agcaaaagct caaggagatg agtgtggaga 1921 atgatagttt gaaaaccgaa ttggagaggc tcaacgaggg aggcttctct cgctcctccc 1981 ttagctccaa gaagcaatgc gtcaccgact tggatgaaga tgatgatgat gacagcttct 2041 cgctggatag gctaaagaat ctactcaaag ttttctcctc tgctgaagat ccaaaggatc 2101 ttaacgtgga ggagcatgaa aaattctatc gaaatttgag agaaaagcta acgaaaatcg 2161 actctttgca acgcgacttg gcccacatgt ctgccgaggt tatggatctg caggacagca 2221 agctaatgtg ggatcatgag aagaaaaccc tggaggctga tatctcgcaa tacattctac 2281 aatgtgatga actaatgaag aacaacgaga tactgctcaa cgaattggag aactacaaac 2341 gcaacaaact cgagaccata cacgaaaaca atgaagagaa tgtggtgcaa ttggaaaccc 2401 agctggatga gtgcaacaag ctgaatcgca ctctggagca ggagtacata gaactgaatg 2461 agaaaatcga agagttggag aaggagaatc aggcgcttaa cgcaaagctg agaacggccc 2521 aacaacagca agagagcctc ctaaccaaag agaaggatct caatctgcag gtggagactt 2581 tggagttgga gaaatgcaat ctcttgctga aattcaatga tttcgattgc cagcgtgagc 2641 agagtgccag agaaaccaaa gagctgctag agtatcgtga gaaatgcctg gatctggaga 2701 aacaattgtc cagcttggcc aaggatcatg cggacttggt gaatgccttg caaaagcaaa 2761 aggacactct cagggagaac atacaagcca aggaggaggc tgaaaaattg gttcgcatgc 2821 atgaaatgac catgcgaaca aaagtggaag ttgatgcttc ggcaaaacag gagttggaac 2881 agaaactcaa aacctctcag tcagaagccc agaaatatca acatgaacta atggccaaga 2941 atatagtgtg tgatagctta aaggaagaaa taaaggtttt gcagacctat gtccaagggg 3001 ccgaaacact ggccaatgag aaactgctgc tggaggaaaa actcatggaa aaagagcaac 3061 atatcaagga gtttaacgaa aagttacaac aagttgcaga agaaaaacaa acattgagca 3121 agcaactgga ggaaattaca acagagaagg agaaattgga aacctcttcg tccttagccg 3181 gtaatgaaac gaaaaccgaa gacattaacc acataagccg cattgctgag ttggaggcta 3241 aacttttggc cacggcagat ttgcaaaatt ctctggatac cttgaatttc gagaaacaag 3301 agctcatcaa agccctacaa cagaaacatg ccgaaaatat gcaatactac atggaaattc 3361 agcgactcac tcctttggtc aatcaaacgg ccactcagag tcagggacct tgtgagaaat 3421 gtcctcaatt ggagcaaacc ctcagtgagc ttaggaagca acaggagaaa ttccaagacc 3481 aaatcaattt ccttaaagaa aaatccgata ttctaaccac caacctattg acggagcaaa 3541 ccaatcagaa attggtgcaa gaagagaagg ccgatgttat ggaacagaat gccactttgc 3601 gtaaagatgt tgaacgcttg cgagcccatc tattggaaat cgaagatatg catactcagg 3661 aaacggtgga aatgcaaaag gaattggatg agaccaaggc gagaatgaat gctctggcaa 3721 tggaggtgtc caagtccagt aatgcctaca catcggcaag cattcgtgcc aatcagcatg 3781 cggaaacgtt acaggcccaa tatgctttgg tggtacaaca gcgagaccaa ctgttgcata 3841 aactatcgca ggccgaagat cgcgaatcga aaaatcaagc cgccttaacg aatttacaat 3901 gtgccctgga acagtttcag aatgacaaag aaaacgatat taaactatcc actcagcggc 3961 tgcgcaagga attacaacaa catgtggaca aggaatccca actgcatttg gatattgaac 4021 aattgcaaca acagttggcc gatgccactc aaggtctgaa tgctgccgcc cgtctctccg 4081 atcaattgga atcatgtcaa cagaccataa atgtcttgcg tgaagaggtg gaaaccctga 4141 aacaccaaaa tctgaccttg gaacagaaat taacctctgc ggaatctagt caatcggata 4201 aaattgaaaa aaccctcatt aagagtctct taattggcta tgtggtcagc acgaatccca 4261 atgacaagca gcagatattg cgcatgatat cctctgtgtt ggacttcaat caaggtgaaa 4321 ccgataaagt gggtctcaac aaacagcagg gtggttggtt gggttcactg ttgggaggag 4381 gcggaggtgg ttcatcaggt tcccattcaa aggagaattt agtgcaggca tttgttcaat 4441 tccttgaaca ggaatctcaa ccacaaacgc agcaacaaca aatgcccaat ctattgaaca 4501 tcacacaaca ttcctcctcg cagggcagca ccaccggggc aactggggcc acaccggcaa 4561 cctcaagacg ctcttcaaat atcacaaatc ccgcattatc acaacaatca agtgggggta 4621 acgccacagc gacagcccat aacacaccag tgcccataca gcctttacta ctcacctcca 4681 cggtcttgga tgatttttcg ccaacacgca actcaagttc catactgaaa gatattctaa 4741 gtgattcctg attattgtaa tagatttaag ttttaaacct ttcctccttt gattgatcct 4801 ttcgctttaa ttgccctaat tgcccaatgt tttgtaacga cgacaacgac aattttccga 4861 aacttgacaa tttttgttca atggcaatgc cagctaatca ttcacactac acattgtgtg 4921 atttatatat ccctgctgtt tttttgtcaa ttatttaatt tttttatgta taaaatgtta 4981 tatcgtcaat tgtgcaactt tttt