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LOCUS XM_059367965 7180 bp mRNA linear INV 02-SEP-2023 (LOC106088027), transcript variant X5, mRNA. ACCESSION XM_059367965 VERSION XM_059367965.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7180 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7180 /gene="LOC106088027" /note="E3 ubiquitin-protein ligase Ubr3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106088027" CDS 91..7080 /gene="LOC106088027" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3" /protein_id="XP_059223948.1" /db_xref="GeneID:106088027" /translation="MDEDENNPGNGNRNREHVAGTSTSSTSASISSASASLSSASNTS NQPRPVSPAVEATSDLDFDDDDDLLDTIEVTVTTDGAPMPRDDTDDMELINLSSPASV VNSLVTSLAAVANASAQLAANTNRPPQRSPEAHERVINVGGNLITWNFENNLNAATQN MPAGAAANPGIGSVAPWDARLATAAAQATASRSPNLSGGNVVPYNYQNRMDTVASGAA ASRSPNATVGDLIAWDYNSMSGHDDGDEPSTSDRANDPSSADTGADDFGLGAAAEGAS SAGGAVPSFFFDTSSFRSRTRKEVAALINAECCRGGPTPDLDYIMDRFFNPSTPIDNA DNISWIRWLIAGGRTIREFVKIVRSYDNHAKCGLVWVPHVVAYRCRTCGISPCMSICR DCFKKGDHTNHDFNMFLSQAGGACDCGDTSVMKAEGFCSDHGINNRQNKEPVPANLLA VAEAIMPKLLFRLLQHFREHSDAASATFNMAAHLCEEFTNMLIDLNNMGEIMRKVMTR ALISKEIYKQFNDLNCLSSRHARVLKKNREKYEDAVNRFPRPEPPDDYKHLAALGEKL IHTTLLEEFIFWTFKFEFPQNLVCFLLNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSR DPDTLSNRVVHMSVQLFSNESLALKMVKELSLLHVMIISLKLMMSKILIQNTLHDPSK NFHFVIDCTRQVMKDHCYWPLVSDFNNVLSHESVALVFLRDDNLIDMWFQFLSMLQGM NVNVRETASHVEFEPNSYYAAFSCELEASAYPMWSIISHLQDGKHADLAKKIITYCVN MLHEWLDAIYFPEPKISQEEMLQASFHFPLHRYLAAFVCQAVTKMGMSLSEVLPTRSY ILPLLMMHPLRVQSFFYEILAGIWVRNGLQIKGQAMTYIQANFCNSMADMDLFFLQIC ATNLPQYFFLQNTIDLFGVAQWLETAPLKQSQKMEQTSMLEGFLTFLATLVTSRTNLG NDEATQCIIEISALLATENKTHSQLLELMPERSGNVHTKNFETFLKQLSVYKAPSAGS ENLEQGLFTPIDEVWEEYYDPLHVLLRAVHRRDFQSSLDRFTNYVKSKNRMPASGNLW PPFRLPRPVGAAFSDPCRILNSRVFHSTILSILYRAVHSRDVSEHLLALAIFLLEIAI ETSEDTKSGGGSDKAAVVECEEQHKPCYPFGMRRDPPKLFRCYPTDNLSCNLRHVVTK ISLKSQEPQVTPAHYRSNPFYTDVDYELDDNQSMDISPAWGYERNLSVVHSNSAPNST TTSTALVPMRLQNMEVALPADLSVVPETGLVIRQDSQEDDSLREIGNAIENTDGSTSP AMEYRFSLQPITMSAENTGMEVVLRDGQAPGPSNTIAGVNQQVATQNQRQNQPDMFPP TTPNTIGSLIPFPRVQPVAVPSTNMDIIPSNPGALGVGRTRLAYEVSNRKRSVENAID GHSKDDVVIDESILSLLLKLHSQLSGTLDSFSVADDGDQEDESLSSSTAMDVDSESSA EPSTSSAAAAAASSQTKKRNIKVSDSRVGDGPFFIGNLLRKIAKHDELCAQNIDEIRR RLWPNQREKQAEAKAREAKEKEERRKRARERQMKMMQEFANKQKEFMQTAAATNMDAG MEEEEELYEEQPREKEYDCIICNCTTPSTEANPIGLVVLVESSGIVGHRRRITERLPL PLSPEDEERLKHSTRLATEFNRRTELLSLKFGEESWYLSNNMAYENGVHVQSCGHHVH LSCLDAYLKTLYASQRQHQHERGEFYCPVCRQLSNSVLPLSPQLDRPTPVVRSGTQPF EQLVSELTNLIKENERPPISTKLSEAMGRAMEDMTNITHRKMKRIPPTFRSLFIFVTS IARTNLESEIIQRGGTLCSTNPTRYKAKRDCIVPLLHVLSVHVRVLVEWPLWSSWASL AGMPVTDIAPVPSHCREVIPAILADPIALLLKFILLAPLHLDQEYFSCMVKVMYNLLY YQIVVQLCVTLTDLECDYILANFNAPPSAESQPSSSRRNSMRSSPNAYLARAMALVLK NTNRLSHLRRDSIPSTSAAASAMNSATANAASPSVSSSNSNSNIDVDSPTTSPLAGVE VNFKSMEMQLQTLCLPFLRIAALLRQHLYRHEMPEISAPGLEFVRLVYYLELVTDSMD WDCFNASKGLCFIPGGSEDTLPKFWCEQLMNIRPPTDTVRELVILNQHASWQQPKLLQ LPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENECCEAVRHTIT CGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLYLSQDRFNLL ESQWLSHKFAHTKHTWVFHRDLL" polyA_site 7180 /gene="LOC106088027" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaactcgatt gattcagcat agtcaataaa gaaaaacaaa ttgaaaataa gcaaaattta 61 aaacttaatt ctttatacga cgcctagaaa atggatgagg atgaaaataa tccaggcaat 121 ggtaatagga atcgagaaca tgtggctggt acctccacct cttctacctc tgcctccatc 181 tcctcagcat ctgcctcatt gtcctcagca agcaatacca gcaatcagcc tagaccagtt 241 tcgcctgctg tcgaagccac ttcggatttg gatttcgatg atgatgacga tttgctagac 301 acaattgagg tgaccgttac tactgacggc gctccaatgc ctcgcgatga tacggatgac 361 atggagctca taaatttatc ctcccccgcc tcggtagtga atagtctggt aacttcattg 421 gcggcggtgg ctaatgcttc ggcccagtta gccgccaaca ccaacaggcc accccaacga 481 tcccccgaag cccatgaacg tgtgataaat gtgggtggaa atctgattac atggaatttc 541 gaaaataatc ttaatgcagc cacacaaaat atgcctgcag gtgctgcagc aaatccgggt 601 atcggatctg ttgcgccctg ggatgcccga ttagccactg cagctgccca agcaacggcc 661 tcaagatcac ccaatttgag cggtggtaac gttgtgcctt ataactacca aaatagaatg 721 gatacagttg ccagtggggc agctgcctca cgctctccaa atgccacagt gggagatctt 781 attgcctggg actacaattc tatgtcaggg cacgatgatg gcgatgagcc ttccacttca 841 gatagagcca atgatccaag ttccgccgac accggtgccg atgattttgg cctgggtgct 901 gccgcagagg gggcttcgtc ggctggtggt gcagttccaa gtttcttctt tgacacttcg 961 tcgtttcgct cgcgtacccg caaagaagtt gcggcactta ttaatgccga gtgttgtcgc 1021 ggtggaccca ctcccgattt ggactatatc atggatagat ttttcaatcc gagtacaccc 1081 atagataatg ctgataatat ctcttggata cgctggctaa ttgctggagg ccgaaccata 1141 agagaatttg ttaaaatcgt tcgcagctat gataaccatg caaaatgtgg ccttgtttgg 1201 gtccctcatg ttgtcgccta tcgttgtcgc acctgtggca tatcaccctg catgtccata 1261 tgccgagact gtttcaagaa gggtgatcac acgaaccacg acttcaatat gtttctctcg 1321 caggcaggtg gtgcctgcga ctgtggtgac acatccgtaa tgaaagccga aggtttctgc 1381 agtgatcatg gcattaacaa tcgccaaaat aaagaacccg tacccgccaa tctcttggcc 1441 gtagctgaag ccataatgcc caaattgctg tttcggctat tgcagcattt tcgtgagcac 1501 agcgatgcag catcagccac attcaatatg gcagcccact tgtgcgagga gttcaccaat 1561 atgttgatag acttgaacaa catgggtgaa ataatgcgta aagtcatgac cagggcctta 1621 ataagcaaag aaatctacaa gcagtttaac gatctgaact gtcttagttc aaggcacgca 1681 cgggttttga agaagaatcg cgaaaaatac gaggatgcgg tcaatcgatt tcctcgaccc 1741 gaaccgccag acgattataa acacttggca gcgctgggcg agaaactcat acacaccact 1801 ttgctggagg aatttatttt ttggacattt aagtttgagt ttccccaaaa tttggtatgc 1861 ttcctgctca atatgctgcc cgatcaggac tacaaggaac atctgactcg cacattcgtt 1921 atgcactaca gccgcatacc ctcagtgctg gaaatgtcac gtgatcccga caccttgagc 1981 aatcgtgtag tgcatatgag tgtgcaattg ttttccaatg agagtttagc cttgaaaatg 2041 gtcaaagaat tatctctgct ccatgttatg atcattagtt tgaagttgat gatgtccaaa 2101 attctcatac aaaatacttt acatgatcct tccaaaaatt tccatttcgt tatcgattgc 2161 acccgccaag tcatgaaaga tcattgctat tggcctctgg tgtcggattt caacaatgtt 2221 ctctcacacg aatcggtggc tttggtgttt ctacgtgatg acaatttgat tgatatgtgg 2281 tttcagtttc tctccatgct gcaaggcatg aatgtcaatg tgcgcgaaac agcctcacat 2341 gtggaatttg agcctaactc ctattatgcg gctttctctt gtgaactgga agccagtgcc 2401 tatcccatgt ggtcgataat atcgcacttg caagatggca aacatgccga tttggccaaa 2461 aagataataa catattgtgt taatatgttg catgaatggt tggatgccat ttattttccg 2521 gaaccaaaaa tatctcaaga ggaaatgcta caggcgtcat ttcattttcc cctacatcgc 2581 tatttagccg cattcgtctg tcaagctgtc acaaaaatgg gcatgtcctt gtcggaagtt 2641 ctacccacaa gatcatatat attaccattg cttatgatgc atccgttaag agtgcagagt 2701 ttcttctatg agattttggc cggaatttgg gtacgcaatg gcctgcaaat caaagggcaa 2761 gccatgacct atatacaagc gaacttttgt aattccatgg ccgatatgga tctattcttt 2821 ttgcaaatct gtgccacaaa tctgccacaa tacttcttcc ttcagaacac catagatctc 2881 tttggtgttg cccaatggct ggaaacggca ccactcaagc aatcgcagaa aatggaacaa 2941 acctcaatgt tagagggatt tttaacattc ctagcgacat tggtcacaag tcgtacgaat 3001 ctaggtaatg atgaggccac gcaatgtatt atagaaatca gtgctctgct ggccacggag 3061 aacaagacgc attcacagtt attggagtta atgcccgagc gttcgggaaa tgtgcatacc 3121 aagaattttg aaactttctt gaaacagtta tctgtgtata aggcgccatc ggctggttcg 3181 gaaaaccttg aacaaggcct gtttacacca atcgatgagg tgtgggagga gtactacgat 3241 ccattgcacg ttctactgcg agcagttcac cggcgtgatt tccaatcttc cctggatcgt 3301 tttacaaact atgtcaagtc gaagaatcgt atgcccgcca gtggtaattt atggcctcca 3361 tttcgtttac ctcgccccgt tggagctgcc ttcagtgatc cctgtcgcat tctaaattct 3421 cgtgtcttcc actccacaat attgtcgata ttgtatcgtg ctgtacattc tcgcgatgta 3481 tcagaacatc tattggcctt agcaatcttc ctattggaaa ttgccattga aacaagcgaa 3541 gataccaagt ctggtggagg tagcgacaag gcggccgttg tagaatgtga ggagcaacat 3601 aagccctgtt acccattcgg tatgcgtcga gatcctccca aattattcag atgctatccg 3661 accgataacc tgagctgcaa tttgagacac gtcgtgacga aaatatctct taagtctcag 3721 gagccacaag tcacaccggc ccactatcgc tcaaatccat tctacacaga tgtcgattac 3781 gagctggatg ataatcaaag catggatata agccctgcct ggggatatga acgcaatttg 3841 agtgtagtgc atagtaattc cgctccaaat tccactacca catctaccgc tttagtgcct 3901 atgcgtcttc agaacatgga agttgcactg ccagcagatc tttctgtagt acccgaaacg 3961 ggattggtaa tacgacaaga cagtcaggag gacgattctt tacgagaaat tgggaatgcc 4021 attgaaaata ccgatggctc aacttcgcca gccatggagt atcgtttctc cttgcaaccc 4081 ataacaatgt ccgcagaaaa cactggcatg gaagtggttc tgcgtgatgg ccaagcaccg 4141 ggtccctcaa acacgatagc aggtgtcaat caacaagtgg ccacacaaaa tcaaagacaa 4201 aaccaaccgg acatgttccc gccaacaact cccaacacaa ttggcagctt gattccattt 4261 ccacgtgtac aacctgtggc tgtgccaagc acgaatatgg atataatacc ctcgaatcca 4321 ggtgccttgg gtgtgggacg tacacgactt gcctacgaag tgagcaacag aaaacgttcg 4381 gtagaaaatg cgatcgatgg tcatagcaaa gacgatgttg taattgatga aagtatactc 4441 tcgctactac tgaaactaca ttcgcaatta agtggcaccc ttgacagctt ctctgtcgct 4501 gacgatggtg atcaggaaga tgagtcccta tcgtcatcta ccgccatgga tgtggactct 4561 gagagttctg cggagccctc aacttcttcg gcagctgctg ctgcagcctc tagtcaaacg 4621 aaaaaacgca acatcaaagt atccgattca cgtgttggtg atggaccttt ctttattggg 4681 aatcttctgc ggaagatagc caaacatgat gagctatgtg ctcaaaacat agacgaaata 4741 cgccgtaggc tatggcccaa ccaaagggag aaacaagccg aagcgaaggc ccgtgaagct 4801 aaagagaagg aagagcgacg caaacgagcc cgtgaaagac aaatgaagat gatgcaagaa 4861 tttgccaaca aacaaaagga gtttatgcaa acagctgcag ccaccaatat ggatgcaggc 4921 atggaggaag aggaggagtt atacgaagag caaccccgcg aaaaagaata tgattgcatt 4981 atttgcaatt gcactacacc cagtaccgaa gccaatccaa ttggtcttgt tgtcttggtg 5041 gaatccagcg gcattgtagg tcatcggcgc cgcatcacag aaaggttacc gctaccccta 5101 agtccggaag atgaagagcg actgaaacac agcacacggc tagccactga attcaatcgc 5161 cgcactgaac ttctaagttt gaagtttggc gaagaatcat ggtatctctc aaataatatg 5221 gcctatgaaa atggggttca cgtgcagtcg tgtggtcacc atgtgcacct tagttgtttg 5281 gatgcttatt tgaaaacatt gtacgccagc caaagacaac atcaacacga gaggggagaa 5341 ttctactgtc ccgtgtgtag gcagctgtcc aattcagtac taccgttgag cccacagctg 5401 gatcgtccaa cgccagtagt gcgttcggga acacaaccat ttgagcaatt ggtatctgag 5461 ttgaccaatc taataaagga aaatgaaaga ccaccgatct caacaaaatt atctgaagct 5521 atgggtcgtg caatggaaga tatgacaaac ataacacatc ggaagatgaa aagaatacca 5581 ccaacgttcc gaagcctatt catatttgtt acctcaattg ctcgcaccaa tctcgaatca 5641 gagattatac aaagaggtgg cacattgtgc tccacaaatc ccacacgata caaagcgaaa 5701 cgtgactgca ttgtacccct gttgcatgta ctctctgtac atgtacgggt gctggtcgaa 5761 tggccgttgt ggagttcttg ggcctctttg gccggtatgc cagttacaga tattgcacca 5821 gtaccctcac actgccgtga agtgatacca gccattttgg ccgatcccat agcgttgcta 5881 ctgaagttta tacttctggc tcctctacat ctagatcaag aatacttctc ttgcatggtc 5941 aaggttatgt acaacctatt gtactaccaa attgtggtcc aactttgtgt tactttaacc 6001 gatctcgagt gtgattatat tttagccaac tttaatgcac cgccttccgc tgaatcgcaa 6061 ccttcttcca gccgtcgaaa ttcgatgcgt tcgtctccca atgcctactt ggccagagcc 6121 atggctttag ttttaaagaa taccaatcgt ttgtcacacc taaggcgtga tagtatacca 6181 tccacctcag cagctgcttc ggccatgaat tcggccacag caaatgccgc ctcccccagc 6241 gtcagcagca gcaacagcaa cagcaacatc gatgttgatt ctccaaccac ttcgccactg 6301 gcgggcgtgg aagtcaactt caaatctatg gaaatgcaac tgcaaacatt gtgtttgccc 6361 tttctgcgta ttgccgcctt gctacgtcag catttgtata ggcacgaaat gccggaaatt 6421 tcagcgccag gcctggagtt tgtgcgttta gtttactatc tggaacttgt aacggattca 6481 atggattggg attgtttcaa tgcctcaaaa gggctatgtt ttataccggg cggctcagag 6541 gacactctgc caaagttttg gtgtgagcag ttaatgaata tccgaccacc aacggacacg 6601 gtacgagaat tagtgattct taatcaacac gcttcgtggc aacaaccaaa gttgctgcaa 6661 ctgcctaggg aatatgagcg attatttacg tattatcatg aaaggccttg tttaaattgc 6721 tataaggtac ctaaggaaag ttcaatatgt ttattgtgtg gcacaattgt gtgtctgaag 6781 caaaattgct gtgccgagaa tgaatgctgc gaagctgtga ggcatactat tacttgtggt 6841 ggtggcattg gtatattcct ggttgtaact tcaacgtata taattgtgat aagaggacga 6901 cgggcatgtc tctggggttc actctatttg gatgactttg atgaggaaga tagggattta 6961 aaacgaggga aacccttata tttgagccag gatcgtttca atttactgga atcccaatgg 7021 ttatcacaca aatttgccca tacgaagcac acgtgggtat tccacagaga tctgttgtga 7081 aatatacaag atctattacg taatatccaa gacatgatag tagacatttg agttaagttc 7141 atttcaatat acgactatat tcgacctata tgaaactata