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LOCUS XM_059367964 7230 bp mRNA linear INV 02-SEP-2023 (LOC106088027), transcript variant X4, mRNA. ACCESSION XM_059367964 VERSION XM_059367964.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7230 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7230 /gene="LOC106088027" /note="E3 ubiquitin-protein ligase Ubr3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106088027" CDS 141..7130 /gene="LOC106088027" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3" /protein_id="XP_059223947.1" /db_xref="GeneID:106088027" /translation="MDEDENNPGNGNRNREHVAGTSTSSTSASISSASASLSSASNTS NQPRPVSPAVEATSDLDFDDDDDLLDTIEVTVTTDGAPMPRDDTDDMELINLSSPASV VNSLVTSLAAVANASAQLAANTNRPPQRSPEAHERVINVGGNLITWNFENNLNAATQN MPAGAAANPGIGSVAPWDARLATAAAQATASRSPNLSGGNVVPYNYQNRMDTVASGAA ASRSPNATVGDLIAWDYNSMSGHDDGDEPSTSDRANDPSSADTGADDFGLGAAAEGAS SAGGAVPSFFFDTSSFRSRTRKEVAALINAECCRGGPTPDLDYIMDRFFNPSTPIDNA DNISWIRWLIAGGRTIREFVKIVRSYDNHAKCGLVWVPHVVAYRCRTCGISPCMSICR DCFKKGDHTNHDFNMFLSQAGGACDCGDTSVMKAEGFCSDHGINNRQNKEPVPANLLA VAEAIMPKLLFRLLQHFREHSDAASATFNMAAHLCEEFTNMLIDLNNMGEIMRKVMTR ALISKEIYKQFNDLNCLSSRHARVLKKNREKYEDAVNRFPRPEPPDDYKHLAALGEKL IHTTLLEEFIFWTFKFEFPQNLVCFLLNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSR DPDTLSNRVVHMSVQLFSNESLALKMVKELSLLHVMIISLKLMMSKILIQNTLHDPSK NFHFVIDCTRQVMKDHCYWPLVSDFNNVLSHESVALVFLRDDNLIDMWFQFLSMLQGM NVNVRETASHVEFEPNSYYAAFSCELEASAYPMWSIISHLQDGKHADLAKKIITYCVN MLHEWLDAIYFPEPKISQEEMLQASFHFPLHRYLAAFVCQAVTKMGMSLSEVLPTRSY ILPLLMMHPLRVQSFFYEILAGIWVRNGLQIKGQAMTYIQANFCNSMADMDLFFLQIC ATNLPQYFFLQNTIDLFGVAQWLETAPLKQSQKMEQTSMLEGFLTFLATLVTSRTNLG NDEATQCIIEISALLATENKTHSQLLELMPERSGNVHTKNFETFLKQLSVYKAPSAGS ENLEQGLFTPIDEVWEEYYDPLHVLLRAVHRRDFQSSLDRFTNYVKSKNRMPASGNLW PPFRLPRPVGAAFSDPCRILNSRVFHSTILSILYRAVHSRDVSEHLLALAIFLLEIAI ETSEDTKSGGGSDKAAVVECEEQHKPCYPFGMRRDPPKLFRCYPTDNLSCNLRHVVTK ISLKSQEPQVTPAHYRSNPFYTDVDYELDDNQSMDISPAWGYERNLSVVHSNSAPNST TTSTALVPMRLQNMEVALPADLSVVPETGLVIRQDSQEDDSLREIGNAIENTDGSTSP AMEYRFSLQPITMSAENTGMEVVLRDGQAPGPSNTIAGVNQQVATQNQRQNQPDMFPP TTPNTIGSLIPFPRVQPVAVPSTNMDIIPSNPGALGVGRTRLAYEVSNRKRSVENAID GHSKDDVVIDESILSLLLKLHSQLSGTLDSFSVADDGDQEDESLSSSTAMDVDSESSA EPSTSSAAAAAASSQTKKRNIKVSDSRVGDGPFFIGNLLRKIAKHDELCAQNIDEIRR RLWPNQREKQAEAKAREAKEKEERRKRARERQMKMMQEFANKQKEFMQTAAATNMDAG MEEEEELYEEQPREKEYDCIICNCTTPSTEANPIGLVVLVESSGIVGHRRRITERLPL PLSPEDEERLKHSTRLATEFNRRTELLSLKFGEESWYLSNNMAYENGVHVQSCGHHVH LSCLDAYLKTLYASQRQHQHERGEFYCPVCRQLSNSVLPLSPQLDRPTPVVRSGTQPF EQLVSELTNLIKENERPPISTKLSEAMGRAMEDMTNITHRKMKRIPPTFRSLFIFVTS IARTNLESEIIQRGGTLCSTNPTRYKAKRDCIVPLLHVLSVHVRVLVEWPLWSSWASL AGMPVTDIAPVPSHCREVIPAILADPIALLLKFILLAPLHLDQEYFSCMVKVMYNLLY YQIVVQLCVTLTDLECDYILANFNAPPSAESQPSSSRRNSMRSSPNAYLARAMALVLK NTNRLSHLRRDSIPSTSAAASAMNSATANAASPSVSSSNSNSNIDVDSPTTSPLAGVE VNFKSMEMQLQTLCLPFLRIAALLRQHLYRHEMPEISAPGLEFVRLVYYLELVTDSMD WDCFNASKGLCFIPGGSEDTLPKFWCEQLMNIRPPTDTVRELVILNQHASWQQPKLLQ LPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENECCEAVRHTIT CGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLYLSQDRFNLL ESQWLSHKFAHTKHTWVFHRDLL" polyA_site 7230 /gene="LOC106088027" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cagcatagtc aataaagtga gagaaatagc ctttttgcaa aatacctagg ctacaaattt 61 aataagtttt gaaattatat gaaaaacaaa ttgaaaataa gcaaaattta aaacttaatt 121 ctttatacga cgcctagaaa atggatgagg atgaaaataa tccaggcaat ggtaatagga 181 atcgagaaca tgtggctggt acctccacct cttctacctc tgcctccatc tcctcagcat 241 ctgcctcatt gtcctcagca agcaatacca gcaatcagcc tagaccagtt tcgcctgctg 301 tcgaagccac ttcggatttg gatttcgatg atgatgacga tttgctagac acaattgagg 361 tgaccgttac tactgacggc gctccaatgc ctcgcgatga tacggatgac atggagctca 421 taaatttatc ctcccccgcc tcggtagtga atagtctggt aacttcattg gcggcggtgg 481 ctaatgcttc ggcccagtta gccgccaaca ccaacaggcc accccaacga tcccccgaag 541 cccatgaacg tgtgataaat gtgggtggaa atctgattac atggaatttc gaaaataatc 601 ttaatgcagc cacacaaaat atgcctgcag gtgctgcagc aaatccgggt atcggatctg 661 ttgcgccctg ggatgcccga ttagccactg cagctgccca agcaacggcc tcaagatcac 721 ccaatttgag cggtggtaac gttgtgcctt ataactacca aaatagaatg gatacagttg 781 ccagtggggc agctgcctca cgctctccaa atgccacagt gggagatctt attgcctggg 841 actacaattc tatgtcaggg cacgatgatg gcgatgagcc ttccacttca gatagagcca 901 atgatccaag ttccgccgac accggtgccg atgattttgg cctgggtgct gccgcagagg 961 gggcttcgtc ggctggtggt gcagttccaa gtttcttctt tgacacttcg tcgtttcgct 1021 cgcgtacccg caaagaagtt gcggcactta ttaatgccga gtgttgtcgc ggtggaccca 1081 ctcccgattt ggactatatc atggatagat ttttcaatcc gagtacaccc atagataatg 1141 ctgataatat ctcttggata cgctggctaa ttgctggagg ccgaaccata agagaatttg 1201 ttaaaatcgt tcgcagctat gataaccatg caaaatgtgg ccttgtttgg gtccctcatg 1261 ttgtcgccta tcgttgtcgc acctgtggca tatcaccctg catgtccata tgccgagact 1321 gtttcaagaa gggtgatcac acgaaccacg acttcaatat gtttctctcg caggcaggtg 1381 gtgcctgcga ctgtggtgac acatccgtaa tgaaagccga aggtttctgc agtgatcatg 1441 gcattaacaa tcgccaaaat aaagaacccg tacccgccaa tctcttggcc gtagctgaag 1501 ccataatgcc caaattgctg tttcggctat tgcagcattt tcgtgagcac agcgatgcag 1561 catcagccac attcaatatg gcagcccact tgtgcgagga gttcaccaat atgttgatag 1621 acttgaacaa catgggtgaa ataatgcgta aagtcatgac cagggcctta ataagcaaag 1681 aaatctacaa gcagtttaac gatctgaact gtcttagttc aaggcacgca cgggttttga 1741 agaagaatcg cgaaaaatac gaggatgcgg tcaatcgatt tcctcgaccc gaaccgccag 1801 acgattataa acacttggca gcgctgggcg agaaactcat acacaccact ttgctggagg 1861 aatttatttt ttggacattt aagtttgagt ttccccaaaa tttggtatgc ttcctgctca 1921 atatgctgcc cgatcaggac tacaaggaac atctgactcg cacattcgtt atgcactaca 1981 gccgcatacc ctcagtgctg gaaatgtcac gtgatcccga caccttgagc aatcgtgtag 2041 tgcatatgag tgtgcaattg ttttccaatg agagtttagc cttgaaaatg gtcaaagaat 2101 tatctctgct ccatgttatg atcattagtt tgaagttgat gatgtccaaa attctcatac 2161 aaaatacttt acatgatcct tccaaaaatt tccatttcgt tatcgattgc acccgccaag 2221 tcatgaaaga tcattgctat tggcctctgg tgtcggattt caacaatgtt ctctcacacg 2281 aatcggtggc tttggtgttt ctacgtgatg acaatttgat tgatatgtgg tttcagtttc 2341 tctccatgct gcaaggcatg aatgtcaatg tgcgcgaaac agcctcacat gtggaatttg 2401 agcctaactc ctattatgcg gctttctctt gtgaactgga agccagtgcc tatcccatgt 2461 ggtcgataat atcgcacttg caagatggca aacatgccga tttggccaaa aagataataa 2521 catattgtgt taatatgttg catgaatggt tggatgccat ttattttccg gaaccaaaaa 2581 tatctcaaga ggaaatgcta caggcgtcat ttcattttcc cctacatcgc tatttagccg 2641 cattcgtctg tcaagctgtc acaaaaatgg gcatgtcctt gtcggaagtt ctacccacaa 2701 gatcatatat attaccattg cttatgatgc atccgttaag agtgcagagt ttcttctatg 2761 agattttggc cggaatttgg gtacgcaatg gcctgcaaat caaagggcaa gccatgacct 2821 atatacaagc gaacttttgt aattccatgg ccgatatgga tctattcttt ttgcaaatct 2881 gtgccacaaa tctgccacaa tacttcttcc ttcagaacac catagatctc tttggtgttg 2941 cccaatggct ggaaacggca ccactcaagc aatcgcagaa aatggaacaa acctcaatgt 3001 tagagggatt tttaacattc ctagcgacat tggtcacaag tcgtacgaat ctaggtaatg 3061 atgaggccac gcaatgtatt atagaaatca gtgctctgct ggccacggag aacaagacgc 3121 attcacagtt attggagtta atgcccgagc gttcgggaaa tgtgcatacc aagaattttg 3181 aaactttctt gaaacagtta tctgtgtata aggcgccatc ggctggttcg gaaaaccttg 3241 aacaaggcct gtttacacca atcgatgagg tgtgggagga gtactacgat ccattgcacg 3301 ttctactgcg agcagttcac cggcgtgatt tccaatcttc cctggatcgt tttacaaact 3361 atgtcaagtc gaagaatcgt atgcccgcca gtggtaattt atggcctcca tttcgtttac 3421 ctcgccccgt tggagctgcc ttcagtgatc cctgtcgcat tctaaattct cgtgtcttcc 3481 actccacaat attgtcgata ttgtatcgtg ctgtacattc tcgcgatgta tcagaacatc 3541 tattggcctt agcaatcttc ctattggaaa ttgccattga aacaagcgaa gataccaagt 3601 ctggtggagg tagcgacaag gcggccgttg tagaatgtga ggagcaacat aagccctgtt 3661 acccattcgg tatgcgtcga gatcctccca aattattcag atgctatccg accgataacc 3721 tgagctgcaa tttgagacac gtcgtgacga aaatatctct taagtctcag gagccacaag 3781 tcacaccggc ccactatcgc tcaaatccat tctacacaga tgtcgattac gagctggatg 3841 ataatcaaag catggatata agccctgcct ggggatatga acgcaatttg agtgtagtgc 3901 atagtaattc cgctccaaat tccactacca catctaccgc tttagtgcct atgcgtcttc 3961 agaacatgga agttgcactg ccagcagatc tttctgtagt acccgaaacg ggattggtaa 4021 tacgacaaga cagtcaggag gacgattctt tacgagaaat tgggaatgcc attgaaaata 4081 ccgatggctc aacttcgcca gccatggagt atcgtttctc cttgcaaccc ataacaatgt 4141 ccgcagaaaa cactggcatg gaagtggttc tgcgtgatgg ccaagcaccg ggtccctcaa 4201 acacgatagc aggtgtcaat caacaagtgg ccacacaaaa tcaaagacaa aaccaaccgg 4261 acatgttccc gccaacaact cccaacacaa ttggcagctt gattccattt ccacgtgtac 4321 aacctgtggc tgtgccaagc acgaatatgg atataatacc ctcgaatcca ggtgccttgg 4381 gtgtgggacg tacacgactt gcctacgaag tgagcaacag aaaacgttcg gtagaaaatg 4441 cgatcgatgg tcatagcaaa gacgatgttg taattgatga aagtatactc tcgctactac 4501 tgaaactaca ttcgcaatta agtggcaccc ttgacagctt ctctgtcgct gacgatggtg 4561 atcaggaaga tgagtcccta tcgtcatcta ccgccatgga tgtggactct gagagttctg 4621 cggagccctc aacttcttcg gcagctgctg ctgcagcctc tagtcaaacg aaaaaacgca 4681 acatcaaagt atccgattca cgtgttggtg atggaccttt ctttattggg aatcttctgc 4741 ggaagatagc caaacatgat gagctatgtg ctcaaaacat agacgaaata cgccgtaggc 4801 tatggcccaa ccaaagggag aaacaagccg aagcgaaggc ccgtgaagct aaagagaagg 4861 aagagcgacg caaacgagcc cgtgaaagac aaatgaagat gatgcaagaa tttgccaaca 4921 aacaaaagga gtttatgcaa acagctgcag ccaccaatat ggatgcaggc atggaggaag 4981 aggaggagtt atacgaagag caaccccgcg aaaaagaata tgattgcatt atttgcaatt 5041 gcactacacc cagtaccgaa gccaatccaa ttggtcttgt tgtcttggtg gaatccagcg 5101 gcattgtagg tcatcggcgc cgcatcacag aaaggttacc gctaccccta agtccggaag 5161 atgaagagcg actgaaacac agcacacggc tagccactga attcaatcgc cgcactgaac 5221 ttctaagttt gaagtttggc gaagaatcat ggtatctctc aaataatatg gcctatgaaa 5281 atggggttca cgtgcagtcg tgtggtcacc atgtgcacct tagttgtttg gatgcttatt 5341 tgaaaacatt gtacgccagc caaagacaac atcaacacga gaggggagaa ttctactgtc 5401 ccgtgtgtag gcagctgtcc aattcagtac taccgttgag cccacagctg gatcgtccaa 5461 cgccagtagt gcgttcggga acacaaccat ttgagcaatt ggtatctgag ttgaccaatc 5521 taataaagga aaatgaaaga ccaccgatct caacaaaatt atctgaagct atgggtcgtg 5581 caatggaaga tatgacaaac ataacacatc ggaagatgaa aagaatacca ccaacgttcc 5641 gaagcctatt catatttgtt acctcaattg ctcgcaccaa tctcgaatca gagattatac 5701 aaagaggtgg cacattgtgc tccacaaatc ccacacgata caaagcgaaa cgtgactgca 5761 ttgtacccct gttgcatgta ctctctgtac atgtacgggt gctggtcgaa tggccgttgt 5821 ggagttcttg ggcctctttg gccggtatgc cagttacaga tattgcacca gtaccctcac 5881 actgccgtga agtgatacca gccattttgg ccgatcccat agcgttgcta ctgaagttta 5941 tacttctggc tcctctacat ctagatcaag aatacttctc ttgcatggtc aaggttatgt 6001 acaacctatt gtactaccaa attgtggtcc aactttgtgt tactttaacc gatctcgagt 6061 gtgattatat tttagccaac tttaatgcac cgccttccgc tgaatcgcaa ccttcttcca 6121 gccgtcgaaa ttcgatgcgt tcgtctccca atgcctactt ggccagagcc atggctttag 6181 ttttaaagaa taccaatcgt ttgtcacacc taaggcgtga tagtatacca tccacctcag 6241 cagctgcttc ggccatgaat tcggccacag caaatgccgc ctcccccagc gtcagcagca 6301 gcaacagcaa cagcaacatc gatgttgatt ctccaaccac ttcgccactg gcgggcgtgg 6361 aagtcaactt caaatctatg gaaatgcaac tgcaaacatt gtgtttgccc tttctgcgta 6421 ttgccgcctt gctacgtcag catttgtata ggcacgaaat gccggaaatt tcagcgccag 6481 gcctggagtt tgtgcgttta gtttactatc tggaacttgt aacggattca atggattggg 6541 attgtttcaa tgcctcaaaa gggctatgtt ttataccggg cggctcagag gacactctgc 6601 caaagttttg gtgtgagcag ttaatgaata tccgaccacc aacggacacg gtacgagaat 6661 tagtgattct taatcaacac gcttcgtggc aacaaccaaa gttgctgcaa ctgcctaggg 6721 aatatgagcg attatttacg tattatcatg aaaggccttg tttaaattgc tataaggtac 6781 ctaaggaaag ttcaatatgt ttattgtgtg gcacaattgt gtgtctgaag caaaattgct 6841 gtgccgagaa tgaatgctgc gaagctgtga ggcatactat tacttgtggt ggtggcattg 6901 gtatattcct ggttgtaact tcaacgtata taattgtgat aagaggacga cgggcatgtc 6961 tctggggttc actctatttg gatgactttg atgaggaaga tagggattta aaacgaggga 7021 aacccttata tttgagccag gatcgtttca atttactgga atcccaatgg ttatcacaca 7081 aatttgccca tacgaagcac acgtgggtat tccacagaga tctgttgtga aatatacaag 7141 atctattacg taatatccaa gacatgatag tagacatttg agttaagttc atttcaatat 7201 acgactatat tcgacctata tgaaactata