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LOCUS XM_059367963 7439 bp mRNA linear INV 02-SEP-2023 (LOC106088027), transcript variant X3, mRNA. ACCESSION XM_059367963 VERSION XM_059367963.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7439 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7439 /gene="LOC106088027" /note="E3 ubiquitin-protein ligase Ubr3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106088027" CDS 350..7339 /gene="LOC106088027" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3" /protein_id="XP_059223946.1" /db_xref="GeneID:106088027" /translation="MDEDENNPGNGNRNREHVAGTSTSSTSASISSASASLSSASNTS NQPRPVSPAVEATSDLDFDDDDDLLDTIEVTVTTDGAPMPRDDTDDMELINLSSPASV VNSLVTSLAAVANASAQLAANTNRPPQRSPEAHERVINVGGNLITWNFENNLNAATQN MPAGAAANPGIGSVAPWDARLATAAAQATASRSPNLSGGNVVPYNYQNRMDTVASGAA ASRSPNATVGDLIAWDYNSMSGHDDGDEPSTSDRANDPSSADTGADDFGLGAAAEGAS SAGGAVPSFFFDTSSFRSRTRKEVAALINAECCRGGPTPDLDYIMDRFFNPSTPIDNA DNISWIRWLIAGGRTIREFVKIVRSYDNHAKCGLVWVPHVVAYRCRTCGISPCMSICR DCFKKGDHTNHDFNMFLSQAGGACDCGDTSVMKAEGFCSDHGINNRQNKEPVPANLLA VAEAIMPKLLFRLLQHFREHSDAASATFNMAAHLCEEFTNMLIDLNNMGEIMRKVMTR ALISKEIYKQFNDLNCLSSRHARVLKKNREKYEDAVNRFPRPEPPDDYKHLAALGEKL IHTTLLEEFIFWTFKFEFPQNLVCFLLNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSR DPDTLSNRVVHMSVQLFSNESLALKMVKELSLLHVMIISLKLMMSKILIQNTLHDPSK NFHFVIDCTRQVMKDHCYWPLVSDFNNVLSHESVALVFLRDDNLIDMWFQFLSMLQGM NVNVRETASHVEFEPNSYYAAFSCELEASAYPMWSIISHLQDGKHADLAKKIITYCVN MLHEWLDAIYFPEPKISQEEMLQASFHFPLHRYLAAFVCQAVTKMGMSLSEVLPTRSY ILPLLMMHPLRVQSFFYEILAGIWVRNGLQIKGQAMTYIQANFCNSMADMDLFFLQIC ATNLPQYFFLQNTIDLFGVAQWLETAPLKQSQKMEQTSMLEGFLTFLATLVTSRTNLG NDEATQCIIEISALLATENKTHSQLLELMPERSGNVHTKNFETFLKQLSVYKAPSAGS ENLEQGLFTPIDEVWEEYYDPLHVLLRAVHRRDFQSSLDRFTNYVKSKNRMPASGNLW PPFRLPRPVGAAFSDPCRILNSRVFHSTILSILYRAVHSRDVSEHLLALAIFLLEIAI ETSEDTKSGGGSDKAAVVECEEQHKPCYPFGMRRDPPKLFRCYPTDNLSCNLRHVVTK ISLKSQEPQVTPAHYRSNPFYTDVDYELDDNQSMDISPAWGYERNLSVVHSNSAPNST TTSTALVPMRLQNMEVALPADLSVVPETGLVIRQDSQEDDSLREIGNAIENTDGSTSP AMEYRFSLQPITMSAENTGMEVVLRDGQAPGPSNTIAGVNQQVATQNQRQNQPDMFPP TTPNTIGSLIPFPRVQPVAVPSTNMDIIPSNPGALGVGRTRLAYEVSNRKRSVENAID GHSKDDVVIDESILSLLLKLHSQLSGTLDSFSVADDGDQEDESLSSSTAMDVDSESSA EPSTSSAAAAAASSQTKKRNIKVSDSRVGDGPFFIGNLLRKIAKHDELCAQNIDEIRR RLWPNQREKQAEAKAREAKEKEERRKRARERQMKMMQEFANKQKEFMQTAAATNMDAG MEEEEELYEEQPREKEYDCIICNCTTPSTEANPIGLVVLVESSGIVGHRRRITERLPL PLSPEDEERLKHSTRLATEFNRRTELLSLKFGEESWYLSNNMAYENGVHVQSCGHHVH LSCLDAYLKTLYASQRQHQHERGEFYCPVCRQLSNSVLPLSPQLDRPTPVVRSGTQPF EQLVSELTNLIKENERPPISTKLSEAMGRAMEDMTNITHRKMKRIPPTFRSLFIFVTS IARTNLESEIIQRGGTLCSTNPTRYKAKRDCIVPLLHVLSVHVRVLVEWPLWSSWASL AGMPVTDIAPVPSHCREVIPAILADPIALLLKFILLAPLHLDQEYFSCMVKVMYNLLY YQIVVQLCVTLTDLECDYILANFNAPPSAESQPSSSRRNSMRSSPNAYLARAMALVLK NTNRLSHLRRDSIPSTSAAASAMNSATANAASPSVSSSNSNSNIDVDSPTTSPLAGVE VNFKSMEMQLQTLCLPFLRIAALLRQHLYRHEMPEISAPGLEFVRLVYYLELVTDSMD WDCFNASKGLCFIPGGSEDTLPKFWCEQLMNIRPPTDTVRELVILNQHASWQQPKLLQ LPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENECCEAVRHTIT CGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLYLSQDRFNLL ESQWLSHKFAHTKHTWVFHRDLL" polyA_site 7439 /gene="LOC106088027" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgattgat tcagcatagt caataaagtg agagaaatag cctttttgca aaatacctag 61 gctacaaatt taataagttt tgaaattata taaatcctag aaaaaaaata ccttagtgaa 121 acttgttctt cattacatta caacaacaat aaacacgttt acgttgcccg tcaccttcgt 181 caagaaaaac aacaacgaca gcagcaacga cgacgacgta gcagcaaacg gcaaacattt 241 tggttgatat cgtcacgacc aacaacaaca aaacattttt tttttttagg aaaaacaaat 301 tgaaaataag caaaatttaa aacttaattc tttatacgac gcctagaaaa tggatgagga 361 tgaaaataat ccaggcaatg gtaataggaa tcgagaacat gtggctggta cctccacctc 421 ttctacctct gcctccatct cctcagcatc tgcctcattg tcctcagcaa gcaataccag 481 caatcagcct agaccagttt cgcctgctgt cgaagccact tcggatttgg atttcgatga 541 tgatgacgat ttgctagaca caattgaggt gaccgttact actgacggcg ctccaatgcc 601 tcgcgatgat acggatgaca tggagctcat aaatttatcc tcccccgcct cggtagtgaa 661 tagtctggta acttcattgg cggcggtggc taatgcttcg gcccagttag ccgccaacac 721 caacaggcca ccccaacgat cccccgaagc ccatgaacgt gtgataaatg tgggtggaaa 781 tctgattaca tggaatttcg aaaataatct taatgcagcc acacaaaata tgcctgcagg 841 tgctgcagca aatccgggta tcggatctgt tgcgccctgg gatgcccgat tagccactgc 901 agctgcccaa gcaacggcct caagatcacc caatttgagc ggtggtaacg ttgtgcctta 961 taactaccaa aatagaatgg atacagttgc cagtggggca gctgcctcac gctctccaaa 1021 tgccacagtg ggagatctta ttgcctggga ctacaattct atgtcagggc acgatgatgg 1081 cgatgagcct tccacttcag atagagccaa tgatccaagt tccgccgaca ccggtgccga 1141 tgattttggc ctgggtgctg ccgcagaggg ggcttcgtcg gctggtggtg cagttccaag 1201 tttcttcttt gacacttcgt cgtttcgctc gcgtacccgc aaagaagttg cggcacttat 1261 taatgccgag tgttgtcgcg gtggacccac tcccgatttg gactatatca tggatagatt 1321 tttcaatccg agtacaccca tagataatgc tgataatatc tcttggatac gctggctaat 1381 tgctggaggc cgaaccataa gagaatttgt taaaatcgtt cgcagctatg ataaccatgc 1441 aaaatgtggc cttgtttggg tccctcatgt tgtcgcctat cgttgtcgca cctgtggcat 1501 atcaccctgc atgtccatat gccgagactg tttcaagaag ggtgatcaca cgaaccacga 1561 cttcaatatg tttctctcgc aggcaggtgg tgcctgcgac tgtggtgaca catccgtaat 1621 gaaagccgaa ggtttctgca gtgatcatgg cattaacaat cgccaaaata aagaacccgt 1681 acccgccaat ctcttggccg tagctgaagc cataatgccc aaattgctgt ttcggctatt 1741 gcagcatttt cgtgagcaca gcgatgcagc atcagccaca ttcaatatgg cagcccactt 1801 gtgcgaggag ttcaccaata tgttgataga cttgaacaac atgggtgaaa taatgcgtaa 1861 agtcatgacc agggccttaa taagcaaaga aatctacaag cagtttaacg atctgaactg 1921 tcttagttca aggcacgcac gggttttgaa gaagaatcgc gaaaaatacg aggatgcggt 1981 caatcgattt cctcgacccg aaccgccaga cgattataaa cacttggcag cgctgggcga 2041 gaaactcata cacaccactt tgctggagga atttattttt tggacattta agtttgagtt 2101 tccccaaaat ttggtatgct tcctgctcaa tatgctgccc gatcaggact acaaggaaca 2161 tctgactcgc acattcgtta tgcactacag ccgcataccc tcagtgctgg aaatgtcacg 2221 tgatcccgac accttgagca atcgtgtagt gcatatgagt gtgcaattgt tttccaatga 2281 gagtttagcc ttgaaaatgg tcaaagaatt atctctgctc catgttatga tcattagttt 2341 gaagttgatg atgtccaaaa ttctcataca aaatacttta catgatcctt ccaaaaattt 2401 ccatttcgtt atcgattgca cccgccaagt catgaaagat cattgctatt ggcctctggt 2461 gtcggatttc aacaatgttc tctcacacga atcggtggct ttggtgtttc tacgtgatga 2521 caatttgatt gatatgtggt ttcagtttct ctccatgctg caaggcatga atgtcaatgt 2581 gcgcgaaaca gcctcacatg tggaatttga gcctaactcc tattatgcgg ctttctcttg 2641 tgaactggaa gccagtgcct atcccatgtg gtcgataata tcgcacttgc aagatggcaa 2701 acatgccgat ttggccaaaa agataataac atattgtgtt aatatgttgc atgaatggtt 2761 ggatgccatt tattttccgg aaccaaaaat atctcaagag gaaatgctac aggcgtcatt 2821 tcattttccc ctacatcgct atttagccgc attcgtctgt caagctgtca caaaaatggg 2881 catgtccttg tcggaagttc tacccacaag atcatatata ttaccattgc ttatgatgca 2941 tccgttaaga gtgcagagtt tcttctatga gattttggcc ggaatttggg tacgcaatgg 3001 cctgcaaatc aaagggcaag ccatgaccta tatacaagcg aacttttgta attccatggc 3061 cgatatggat ctattctttt tgcaaatctg tgccacaaat ctgccacaat acttcttcct 3121 tcagaacacc atagatctct ttggtgttgc ccaatggctg gaaacggcac cactcaagca 3181 atcgcagaaa atggaacaaa cctcaatgtt agagggattt ttaacattcc tagcgacatt 3241 ggtcacaagt cgtacgaatc taggtaatga tgaggccacg caatgtatta tagaaatcag 3301 tgctctgctg gccacggaga acaagacgca ttcacagtta ttggagttaa tgcccgagcg 3361 ttcgggaaat gtgcatacca agaattttga aactttcttg aaacagttat ctgtgtataa 3421 ggcgccatcg gctggttcgg aaaaccttga acaaggcctg tttacaccaa tcgatgaggt 3481 gtgggaggag tactacgatc cattgcacgt tctactgcga gcagttcacc ggcgtgattt 3541 ccaatcttcc ctggatcgtt ttacaaacta tgtcaagtcg aagaatcgta tgcccgccag 3601 tggtaattta tggcctccat ttcgtttacc tcgccccgtt ggagctgcct tcagtgatcc 3661 ctgtcgcatt ctaaattctc gtgtcttcca ctccacaata ttgtcgatat tgtatcgtgc 3721 tgtacattct cgcgatgtat cagaacatct attggcctta gcaatcttcc tattggaaat 3781 tgccattgaa acaagcgaag ataccaagtc tggtggaggt agcgacaagg cggccgttgt 3841 agaatgtgag gagcaacata agccctgtta cccattcggt atgcgtcgag atcctcccaa 3901 attattcaga tgctatccga ccgataacct gagctgcaat ttgagacacg tcgtgacgaa 3961 aatatctctt aagtctcagg agccacaagt cacaccggcc cactatcgct caaatccatt 4021 ctacacagat gtcgattacg agctggatga taatcaaagc atggatataa gccctgcctg 4081 gggatatgaa cgcaatttga gtgtagtgca tagtaattcc gctccaaatt ccactaccac 4141 atctaccgct ttagtgccta tgcgtcttca gaacatggaa gttgcactgc cagcagatct 4201 ttctgtagta cccgaaacgg gattggtaat acgacaagac agtcaggagg acgattcttt 4261 acgagaaatt gggaatgcca ttgaaaatac cgatggctca acttcgccag ccatggagta 4321 tcgtttctcc ttgcaaccca taacaatgtc cgcagaaaac actggcatgg aagtggttct 4381 gcgtgatggc caagcaccgg gtccctcaaa cacgatagca ggtgtcaatc aacaagtggc 4441 cacacaaaat caaagacaaa accaaccgga catgttcccg ccaacaactc ccaacacaat 4501 tggcagcttg attccatttc cacgtgtaca acctgtggct gtgccaagca cgaatatgga 4561 tataataccc tcgaatccag gtgccttggg tgtgggacgt acacgacttg cctacgaagt 4621 gagcaacaga aaacgttcgg tagaaaatgc gatcgatggt catagcaaag acgatgttgt 4681 aattgatgaa agtatactct cgctactact gaaactacat tcgcaattaa gtggcaccct 4741 tgacagcttc tctgtcgctg acgatggtga tcaggaagat gagtccctat cgtcatctac 4801 cgccatggat gtggactctg agagttctgc ggagccctca acttcttcgg cagctgctgc 4861 tgcagcctct agtcaaacga aaaaacgcaa catcaaagta tccgattcac gtgttggtga 4921 tggacctttc tttattggga atcttctgcg gaagatagcc aaacatgatg agctatgtgc 4981 tcaaaacata gacgaaatac gccgtaggct atggcccaac caaagggaga aacaagccga 5041 agcgaaggcc cgtgaagcta aagagaagga agagcgacgc aaacgagccc gtgaaagaca 5101 aatgaagatg atgcaagaat ttgccaacaa acaaaaggag tttatgcaaa cagctgcagc 5161 caccaatatg gatgcaggca tggaggaaga ggaggagtta tacgaagagc aaccccgcga 5221 aaaagaatat gattgcatta tttgcaattg cactacaccc agtaccgaag ccaatccaat 5281 tggtcttgtt gtcttggtgg aatccagcgg cattgtaggt catcggcgcc gcatcacaga 5341 aaggttaccg ctacccctaa gtccggaaga tgaagagcga ctgaaacaca gcacacggct 5401 agccactgaa ttcaatcgcc gcactgaact tctaagtttg aagtttggcg aagaatcatg 5461 gtatctctca aataatatgg cctatgaaaa tggggttcac gtgcagtcgt gtggtcacca 5521 tgtgcacctt agttgtttgg atgcttattt gaaaacattg tacgccagcc aaagacaaca 5581 tcaacacgag aggggagaat tctactgtcc cgtgtgtagg cagctgtcca attcagtact 5641 accgttgagc ccacagctgg atcgtccaac gccagtagtg cgttcgggaa cacaaccatt 5701 tgagcaattg gtatctgagt tgaccaatct aataaaggaa aatgaaagac caccgatctc 5761 aacaaaatta tctgaagcta tgggtcgtgc aatggaagat atgacaaaca taacacatcg 5821 gaagatgaaa agaataccac caacgttccg aagcctattc atatttgtta cctcaattgc 5881 tcgcaccaat ctcgaatcag agattataca aagaggtggc acattgtgct ccacaaatcc 5941 cacacgatac aaagcgaaac gtgactgcat tgtacccctg ttgcatgtac tctctgtaca 6001 tgtacgggtg ctggtcgaat ggccgttgtg gagttcttgg gcctctttgg ccggtatgcc 6061 agttacagat attgcaccag taccctcaca ctgccgtgaa gtgataccag ccattttggc 6121 cgatcccata gcgttgctac tgaagtttat acttctggct cctctacatc tagatcaaga 6181 atacttctct tgcatggtca aggttatgta caacctattg tactaccaaa ttgtggtcca 6241 actttgtgtt actttaaccg atctcgagtg tgattatatt ttagccaact ttaatgcacc 6301 gccttccgct gaatcgcaac cttcttccag ccgtcgaaat tcgatgcgtt cgtctcccaa 6361 tgcctacttg gccagagcca tggctttagt tttaaagaat accaatcgtt tgtcacacct 6421 aaggcgtgat agtataccat ccacctcagc agctgcttcg gccatgaatt cggccacagc 6481 aaatgccgcc tcccccagcg tcagcagcag caacagcaac agcaacatcg atgttgattc 6541 tccaaccact tcgccactgg cgggcgtgga agtcaacttc aaatctatgg aaatgcaact 6601 gcaaacattg tgtttgccct ttctgcgtat tgccgccttg ctacgtcagc atttgtatag 6661 gcacgaaatg ccggaaattt cagcgccagg cctggagttt gtgcgtttag tttactatct 6721 ggaacttgta acggattcaa tggattggga ttgtttcaat gcctcaaaag ggctatgttt 6781 tataccgggc ggctcagagg acactctgcc aaagttttgg tgtgagcagt taatgaatat 6841 ccgaccacca acggacacgg tacgagaatt agtgattctt aatcaacacg cttcgtggca 6901 acaaccaaag ttgctgcaac tgcctaggga atatgagcga ttatttacgt attatcatga 6961 aaggccttgt ttaaattgct ataaggtacc taaggaaagt tcaatatgtt tattgtgtgg 7021 cacaattgtg tgtctgaagc aaaattgctg tgccgagaat gaatgctgcg aagctgtgag 7081 gcatactatt acttgtggtg gtggcattgg tatattcctg gttgtaactt caacgtatat 7141 aattgtgata agaggacgac gggcatgtct ctggggttca ctctatttgg atgactttga 7201 tgaggaagat agggatttaa aacgagggaa acccttatat ttgagccagg atcgtttcaa 7261 tttactggaa tcccaatggt tatcacacaa atttgcccat acgaagcaca cgtgggtatt 7321 ccacagagat ctgttgtgaa atatacaaga tctattacgt aatatccaag acatgatagt 7381 agacatttga gttaagttca tttcaatata cgactatatt cgacctatat gaaactata