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LOCUS XM_059367962 7890 bp mRNA linear INV 02-SEP-2023 (LOC106088027), transcript variant X1, mRNA. ACCESSION XM_059367962 VERSION XM_059367962.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7890 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7890 /gene="LOC106088027" /note="E3 ubiquitin-protein ligase Ubr3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106088027" CDS 801..7790 /gene="LOC106088027" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3" /protein_id="XP_059223945.1" /db_xref="GeneID:106088027" /translation="MDEDENNPGNGNRNREHVAGTSTSSTSASISSASASLSSASNTS NQPRPVSPAVEATSDLDFDDDDDLLDTIEVTVTTDGAPMPRDDTDDMELINLSSPASV VNSLVTSLAAVANASAQLAANTNRPPQRSPEAHERVINVGGNLITWNFENNLNAATQN MPAGAAANPGIGSVAPWDARLATAAAQATASRSPNLSGGNVVPYNYQNRMDTVASGAA ASRSPNATVGDLIAWDYNSMSGHDDGDEPSTSDRANDPSSADTGADDFGLGAAAEGAS SAGGAVPSFFFDTSSFRSRTRKEVAALINAECCRGGPTPDLDYIMDRFFNPSTPIDNA DNISWIRWLIAGGRTIREFVKIVRSYDNHAKCGLVWVPHVVAYRCRTCGISPCMSICR DCFKKGDHTNHDFNMFLSQAGGACDCGDTSVMKAEGFCSDHGINNRQNKEPVPANLLA VAEAIMPKLLFRLLQHFREHSDAASATFNMAAHLCEEFTNMLIDLNNMGEIMRKVMTR ALISKEIYKQFNDLNCLSSRHARVLKKNREKYEDAVNRFPRPEPPDDYKHLAALGEKL IHTTLLEEFIFWTFKFEFPQNLVCFLLNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSR DPDTLSNRVVHMSVQLFSNESLALKMVKELSLLHVMIISLKLMMSKILIQNTLHDPSK NFHFVIDCTRQVMKDHCYWPLVSDFNNVLSHESVALVFLRDDNLIDMWFQFLSMLQGM NVNVRETASHVEFEPNSYYAAFSCELEASAYPMWSIISHLQDGKHADLAKKIITYCVN MLHEWLDAIYFPEPKISQEEMLQASFHFPLHRYLAAFVCQAVTKMGMSLSEVLPTRSY ILPLLMMHPLRVQSFFYEILAGIWVRNGLQIKGQAMTYIQANFCNSMADMDLFFLQIC ATNLPQYFFLQNTIDLFGVAQWLETAPLKQSQKMEQTSMLEGFLTFLATLVTSRTNLG NDEATQCIIEISALLATENKTHSQLLELMPERSGNVHTKNFETFLKQLSVYKAPSAGS ENLEQGLFTPIDEVWEEYYDPLHVLLRAVHRRDFQSSLDRFTNYVKSKNRMPASGNLW PPFRLPRPVGAAFSDPCRILNSRVFHSTILSILYRAVHSRDVSEHLLALAIFLLEIAI ETSEDTKSGGGSDKAAVVECEEQHKPCYPFGMRRDPPKLFRCYPTDNLSCNLRHVVTK ISLKSQEPQVTPAHYRSNPFYTDVDYELDDNQSMDISPAWGYERNLSVVHSNSAPNST TTSTALVPMRLQNMEVALPADLSVVPETGLVIRQDSQEDDSLREIGNAIENTDGSTSP AMEYRFSLQPITMSAENTGMEVVLRDGQAPGPSNTIAGVNQQVATQNQRQNQPDMFPP TTPNTIGSLIPFPRVQPVAVPSTNMDIIPSNPGALGVGRTRLAYEVSNRKRSVENAID GHSKDDVVIDESILSLLLKLHSQLSGTLDSFSVADDGDQEDESLSSSTAMDVDSESSA EPSTSSAAAAAASSQTKKRNIKVSDSRVGDGPFFIGNLLRKIAKHDELCAQNIDEIRR RLWPNQREKQAEAKAREAKEKEERRKRARERQMKMMQEFANKQKEFMQTAAATNMDAG MEEEEELYEEQPREKEYDCIICNCTTPSTEANPIGLVVLVESSGIVGHRRRITERLPL PLSPEDEERLKHSTRLATEFNRRTELLSLKFGEESWYLSNNMAYENGVHVQSCGHHVH LSCLDAYLKTLYASQRQHQHERGEFYCPVCRQLSNSVLPLSPQLDRPTPVVRSGTQPF EQLVSELTNLIKENERPPISTKLSEAMGRAMEDMTNITHRKMKRIPPTFRSLFIFVTS IARTNLESEIIQRGGTLCSTNPTRYKAKRDCIVPLLHVLSVHVRVLVEWPLWSSWASL AGMPVTDIAPVPSHCREVIPAILADPIALLLKFILLAPLHLDQEYFSCMVKVMYNLLY YQIVVQLCVTLTDLECDYILANFNAPPSAESQPSSSRRNSMRSSPNAYLARAMALVLK NTNRLSHLRRDSIPSTSAAASAMNSATANAASPSVSSSNSNSNIDVDSPTTSPLAGVE VNFKSMEMQLQTLCLPFLRIAALLRQHLYRHEMPEISAPGLEFVRLVYYLELVTDSMD WDCFNASKGLCFIPGGSEDTLPKFWCEQLMNIRPPTDTVRELVILNQHASWQQPKLLQ LPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENECCEAVRHTIT CGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLYLSQDRFNLL ESQWLSHKFAHTKHTWVFHRDLL" polyA_site 7890 /gene="LOC106088027" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttggcaaaaa ataaacattt tagtgtttta ctgagttcga tacttgacca cgctctaata 61 gaaaaaaatt gaatcagctg agctgacact ttgggctttc ttcttttgta tcttattcca 121 tcgttcgtct tcatcatttt tagttgttca gttctctctc ttctctggct accataattt 181 tagtggaatt tagtgcgttg caattttttt ttcaagcacg gattcttgca aaaatattct 241 tgcaacaatt aaaacgaaaa tactaaacgg ttcgcaacct agtggatgtg cgtcaaagga 301 attcacaaaa taaagtttga cagatatatt agatggccag agaatagaaa gcgaaaacgt 361 ggtaatatta atcgaagaaa atatctaagg aaaaaaaaaa accaaaaaag ttttgtgtgt 421 gatacaagca agaaccaccg attcaagcaa tgttagtgaa caagaataaa taatatcaaa 481 aggaaaagag ccaaacgacc gaccgccgtc gtcgttgtcc gtatgagcca aattatttct 541 tgaaatccta gaaaaaaaat accttagtga aacttgttct tcattacatt acaacaacaa 601 taaacacgtt tacgttgccc gtcaccttcg tcaagaaaaa caacaacgac agcagcaacg 661 acgacgacgt agcagcaaac ggcaaacatt ttggttgata tcgtcacgac caacaacaac 721 aaaacatttt ttttttttag gaaaaacaaa ttgaaaataa gcaaaattta aaacttaatt 781 ctttatacga cgcctagaaa atggatgagg atgaaaataa tccaggcaat ggtaatagga 841 atcgagaaca tgtggctggt acctccacct cttctacctc tgcctccatc tcctcagcat 901 ctgcctcatt gtcctcagca agcaatacca gcaatcagcc tagaccagtt tcgcctgctg 961 tcgaagccac ttcggatttg gatttcgatg atgatgacga tttgctagac acaattgagg 1021 tgaccgttac tactgacggc gctccaatgc ctcgcgatga tacggatgac atggagctca 1081 taaatttatc ctcccccgcc tcggtagtga atagtctggt aacttcattg gcggcggtgg 1141 ctaatgcttc ggcccagtta gccgccaaca ccaacaggcc accccaacga tcccccgaag 1201 cccatgaacg tgtgataaat gtgggtggaa atctgattac atggaatttc gaaaataatc 1261 ttaatgcagc cacacaaaat atgcctgcag gtgctgcagc aaatccgggt atcggatctg 1321 ttgcgccctg ggatgcccga ttagccactg cagctgccca agcaacggcc tcaagatcac 1381 ccaatttgag cggtggtaac gttgtgcctt ataactacca aaatagaatg gatacagttg 1441 ccagtggggc agctgcctca cgctctccaa atgccacagt gggagatctt attgcctggg 1501 actacaattc tatgtcaggg cacgatgatg gcgatgagcc ttccacttca gatagagcca 1561 atgatccaag ttccgccgac accggtgccg atgattttgg cctgggtgct gccgcagagg 1621 gggcttcgtc ggctggtggt gcagttccaa gtttcttctt tgacacttcg tcgtttcgct 1681 cgcgtacccg caaagaagtt gcggcactta ttaatgccga gtgttgtcgc ggtggaccca 1741 ctcccgattt ggactatatc atggatagat ttttcaatcc gagtacaccc atagataatg 1801 ctgataatat ctcttggata cgctggctaa ttgctggagg ccgaaccata agagaatttg 1861 ttaaaatcgt tcgcagctat gataaccatg caaaatgtgg ccttgtttgg gtccctcatg 1921 ttgtcgccta tcgttgtcgc acctgtggca tatcaccctg catgtccata tgccgagact 1981 gtttcaagaa gggtgatcac acgaaccacg acttcaatat gtttctctcg caggcaggtg 2041 gtgcctgcga ctgtggtgac acatccgtaa tgaaagccga aggtttctgc agtgatcatg 2101 gcattaacaa tcgccaaaat aaagaacccg tacccgccaa tctcttggcc gtagctgaag 2161 ccataatgcc caaattgctg tttcggctat tgcagcattt tcgtgagcac agcgatgcag 2221 catcagccac attcaatatg gcagcccact tgtgcgagga gttcaccaat atgttgatag 2281 acttgaacaa catgggtgaa ataatgcgta aagtcatgac cagggcctta ataagcaaag 2341 aaatctacaa gcagtttaac gatctgaact gtcttagttc aaggcacgca cgggttttga 2401 agaagaatcg cgaaaaatac gaggatgcgg tcaatcgatt tcctcgaccc gaaccgccag 2461 acgattataa acacttggca gcgctgggcg agaaactcat acacaccact ttgctggagg 2521 aatttatttt ttggacattt aagtttgagt ttccccaaaa tttggtatgc ttcctgctca 2581 atatgctgcc cgatcaggac tacaaggaac atctgactcg cacattcgtt atgcactaca 2641 gccgcatacc ctcagtgctg gaaatgtcac gtgatcccga caccttgagc aatcgtgtag 2701 tgcatatgag tgtgcaattg ttttccaatg agagtttagc cttgaaaatg gtcaaagaat 2761 tatctctgct ccatgttatg atcattagtt tgaagttgat gatgtccaaa attctcatac 2821 aaaatacttt acatgatcct tccaaaaatt tccatttcgt tatcgattgc acccgccaag 2881 tcatgaaaga tcattgctat tggcctctgg tgtcggattt caacaatgtt ctctcacacg 2941 aatcggtggc tttggtgttt ctacgtgatg acaatttgat tgatatgtgg tttcagtttc 3001 tctccatgct gcaaggcatg aatgtcaatg tgcgcgaaac agcctcacat gtggaatttg 3061 agcctaactc ctattatgcg gctttctctt gtgaactgga agccagtgcc tatcccatgt 3121 ggtcgataat atcgcacttg caagatggca aacatgccga tttggccaaa aagataataa 3181 catattgtgt taatatgttg catgaatggt tggatgccat ttattttccg gaaccaaaaa 3241 tatctcaaga ggaaatgcta caggcgtcat ttcattttcc cctacatcgc tatttagccg 3301 cattcgtctg tcaagctgtc acaaaaatgg gcatgtcctt gtcggaagtt ctacccacaa 3361 gatcatatat attaccattg cttatgatgc atccgttaag agtgcagagt ttcttctatg 3421 agattttggc cggaatttgg gtacgcaatg gcctgcaaat caaagggcaa gccatgacct 3481 atatacaagc gaacttttgt aattccatgg ccgatatgga tctattcttt ttgcaaatct 3541 gtgccacaaa tctgccacaa tacttcttcc ttcagaacac catagatctc tttggtgttg 3601 cccaatggct ggaaacggca ccactcaagc aatcgcagaa aatggaacaa acctcaatgt 3661 tagagggatt tttaacattc ctagcgacat tggtcacaag tcgtacgaat ctaggtaatg 3721 atgaggccac gcaatgtatt atagaaatca gtgctctgct ggccacggag aacaagacgc 3781 attcacagtt attggagtta atgcccgagc gttcgggaaa tgtgcatacc aagaattttg 3841 aaactttctt gaaacagtta tctgtgtata aggcgccatc ggctggttcg gaaaaccttg 3901 aacaaggcct gtttacacca atcgatgagg tgtgggagga gtactacgat ccattgcacg 3961 ttctactgcg agcagttcac cggcgtgatt tccaatcttc cctggatcgt tttacaaact 4021 atgtcaagtc gaagaatcgt atgcccgcca gtggtaattt atggcctcca tttcgtttac 4081 ctcgccccgt tggagctgcc ttcagtgatc cctgtcgcat tctaaattct cgtgtcttcc 4141 actccacaat attgtcgata ttgtatcgtg ctgtacattc tcgcgatgta tcagaacatc 4201 tattggcctt agcaatcttc ctattggaaa ttgccattga aacaagcgaa gataccaagt 4261 ctggtggagg tagcgacaag gcggccgttg tagaatgtga ggagcaacat aagccctgtt 4321 acccattcgg tatgcgtcga gatcctccca aattattcag atgctatccg accgataacc 4381 tgagctgcaa tttgagacac gtcgtgacga aaatatctct taagtctcag gagccacaag 4441 tcacaccggc ccactatcgc tcaaatccat tctacacaga tgtcgattac gagctggatg 4501 ataatcaaag catggatata agccctgcct ggggatatga acgcaatttg agtgtagtgc 4561 atagtaattc cgctccaaat tccactacca catctaccgc tttagtgcct atgcgtcttc 4621 agaacatgga agttgcactg ccagcagatc tttctgtagt acccgaaacg ggattggtaa 4681 tacgacaaga cagtcaggag gacgattctt tacgagaaat tgggaatgcc attgaaaata 4741 ccgatggctc aacttcgcca gccatggagt atcgtttctc cttgcaaccc ataacaatgt 4801 ccgcagaaaa cactggcatg gaagtggttc tgcgtgatgg ccaagcaccg ggtccctcaa 4861 acacgatagc aggtgtcaat caacaagtgg ccacacaaaa tcaaagacaa aaccaaccgg 4921 acatgttccc gccaacaact cccaacacaa ttggcagctt gattccattt ccacgtgtac 4981 aacctgtggc tgtgccaagc acgaatatgg atataatacc ctcgaatcca ggtgccttgg 5041 gtgtgggacg tacacgactt gcctacgaag tgagcaacag aaaacgttcg gtagaaaatg 5101 cgatcgatgg tcatagcaaa gacgatgttg taattgatga aagtatactc tcgctactac 5161 tgaaactaca ttcgcaatta agtggcaccc ttgacagctt ctctgtcgct gacgatggtg 5221 atcaggaaga tgagtcccta tcgtcatcta ccgccatgga tgtggactct gagagttctg 5281 cggagccctc aacttcttcg gcagctgctg ctgcagcctc tagtcaaacg aaaaaacgca 5341 acatcaaagt atccgattca cgtgttggtg atggaccttt ctttattggg aatcttctgc 5401 ggaagatagc caaacatgat gagctatgtg ctcaaaacat agacgaaata cgccgtaggc 5461 tatggcccaa ccaaagggag aaacaagccg aagcgaaggc ccgtgaagct aaagagaagg 5521 aagagcgacg caaacgagcc cgtgaaagac aaatgaagat gatgcaagaa tttgccaaca 5581 aacaaaagga gtttatgcaa acagctgcag ccaccaatat ggatgcaggc atggaggaag 5641 aggaggagtt atacgaagag caaccccgcg aaaaagaata tgattgcatt atttgcaatt 5701 gcactacacc cagtaccgaa gccaatccaa ttggtcttgt tgtcttggtg gaatccagcg 5761 gcattgtagg tcatcggcgc cgcatcacag aaaggttacc gctaccccta agtccggaag 5821 atgaagagcg actgaaacac agcacacggc tagccactga attcaatcgc cgcactgaac 5881 ttctaagttt gaagtttggc gaagaatcat ggtatctctc aaataatatg gcctatgaaa 5941 atggggttca cgtgcagtcg tgtggtcacc atgtgcacct tagttgtttg gatgcttatt 6001 tgaaaacatt gtacgccagc caaagacaac atcaacacga gaggggagaa ttctactgtc 6061 ccgtgtgtag gcagctgtcc aattcagtac taccgttgag cccacagctg gatcgtccaa 6121 cgccagtagt gcgttcggga acacaaccat ttgagcaatt ggtatctgag ttgaccaatc 6181 taataaagga aaatgaaaga ccaccgatct caacaaaatt atctgaagct atgggtcgtg 6241 caatggaaga tatgacaaac ataacacatc ggaagatgaa aagaatacca ccaacgttcc 6301 gaagcctatt catatttgtt acctcaattg ctcgcaccaa tctcgaatca gagattatac 6361 aaagaggtgg cacattgtgc tccacaaatc ccacacgata caaagcgaaa cgtgactgca 6421 ttgtacccct gttgcatgta ctctctgtac atgtacgggt gctggtcgaa tggccgttgt 6481 ggagttcttg ggcctctttg gccggtatgc cagttacaga tattgcacca gtaccctcac 6541 actgccgtga agtgatacca gccattttgg ccgatcccat agcgttgcta ctgaagttta 6601 tacttctggc tcctctacat ctagatcaag aatacttctc ttgcatggtc aaggttatgt 6661 acaacctatt gtactaccaa attgtggtcc aactttgtgt tactttaacc gatctcgagt 6721 gtgattatat tttagccaac tttaatgcac cgccttccgc tgaatcgcaa ccttcttcca 6781 gccgtcgaaa ttcgatgcgt tcgtctccca atgcctactt ggccagagcc atggctttag 6841 ttttaaagaa taccaatcgt ttgtcacacc taaggcgtga tagtatacca tccacctcag 6901 cagctgcttc ggccatgaat tcggccacag caaatgccgc ctcccccagc gtcagcagca 6961 gcaacagcaa cagcaacatc gatgttgatt ctccaaccac ttcgccactg gcgggcgtgg 7021 aagtcaactt caaatctatg gaaatgcaac tgcaaacatt gtgtttgccc tttctgcgta 7081 ttgccgcctt gctacgtcag catttgtata ggcacgaaat gccggaaatt tcagcgccag 7141 gcctggagtt tgtgcgttta gtttactatc tggaacttgt aacggattca atggattggg 7201 attgtttcaa tgcctcaaaa gggctatgtt ttataccggg cggctcagag gacactctgc 7261 caaagttttg gtgtgagcag ttaatgaata tccgaccacc aacggacacg gtacgagaat 7321 tagtgattct taatcaacac gcttcgtggc aacaaccaaa gttgctgcaa ctgcctaggg 7381 aatatgagcg attatttacg tattatcatg aaaggccttg tttaaattgc tataaggtac 7441 ctaaggaaag ttcaatatgt ttattgtgtg gcacaattgt gtgtctgaag caaaattgct 7501 gtgccgagaa tgaatgctgc gaagctgtga ggcatactat tacttgtggt ggtggcattg 7561 gtatattcct ggttgtaact tcaacgtata taattgtgat aagaggacga cgggcatgtc 7621 tctggggttc actctatttg gatgactttg atgaggaaga tagggattta aaacgaggga 7681 aacccttata tttgagccag gatcgtttca atttactgga atcccaatgg ttatcacaca 7741 aatttgccca tacgaagcac acgtgggtat tccacagaga tctgttgtga aatatacaag 7801 atctattacg taatatccaa gacatgatag tagacatttg agttaagttc atttcaatat 7861 acgactatat tcgacctata tgaaactata