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LOCUS XM_059367891 3220 bp mRNA linear INV 02-SEP-2023 (LOC106083925), transcript variant X2, mRNA. ACCESSION XM_059367891 VERSION XM_059367891.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3220 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3220 /gene="LOC106083925" /note="E3 ubiquitin-protein ligase TRAIP; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083925" CDS 1545..3140 /gene="LOC106083925" /codon_start=1 /product="E3 ubiquitin-protein ligase TRAIP" /protein_id="XP_059223874.1" /db_xref="GeneID:106083925" /translation="MPGLQLMCPVCTEDFQEADDIHVTNCGHLYHFSCMEDWRTRANS CPQCRLENPNTYKVYLVLSEGNETSAPSEEDEDLHAKLESSAEKINELQALLDESELN MFHIQEQYTVEQDLRKKLEHKIAENANYEENFYQLHHQFSESEERVKLLKEDNERLII EKEQSAEKLFLKAKELSMLQQSLNAATKAHSEAQLIDYTAQCSQYEDRLKLLQQEIKQ LTLDNEYKSKDIALKIREIAALRVFRQGNTDPSNKQLTNTKCILDMEQKLKDITAQLE KEIANSTQLSIDKIILQSQIQRMELQMRGTQEAPRNEQCELVDDAAINVDDDSNKNKA SVSNKTALLHTINDNELSEGTARSVVLQKFPFLELQPSLEEVIISIAAKMDVVISKGD IVKVGTIGTSAKSPKIPKQVSVYVEFASDDLKWRLLANGHLLKRDETFKAVNIAEYMD RKLHAIFLYANRKLRGVLFDYITCRNNTIIAKKTAQDADTLIIYSKEQVDELLKISNP PMKVSKPTTNATKKAPKVINEGY" ORIGIN 1 caattacttt ttgggcaacc caatattaaa tttgtttcat ttttatttac ttttgatgaa 61 gatccatggc agcagccagt gtttagttac agaaaactct caacaaataa agttgcaatt 121 ttacctcaag tcggttgttc tatattagaa gataacaaga aaagagcaat tatcggtttc 181 ttaagtgttt gatggaatca accttatggg agagctacga tgaaaccaac aacgttcctt 241 tgaatttgtt aaggagggaa gatgctgcaa tggtattgag tgggtctggc tggctggctg 301 acattcaatg gaaattagtc tgccaattat gaatgaatac agatatcttc aatgataaca 361 aagtgtccgt aaccgtagcc tcacaccact ggtcgaagcc acaatatcca aaagcattag 421 atggttagtc aaaggtttct ttgtccgcaa gggacttgag aacgttgttt ctacttttgt 481 gtacggtgct ggaatgtaaa gcaattgtag tcctatgcag ccttcgaaat acatgctgtt 541 gttgctcggc gaatggaaat tgtccaacgg gaggatcggg agtagtaagc tctcatgcgt 601 cttggctaca gataaaagaa gggagatcgc tctgttggac tcctctataa tagtcttcag 661 acaggctgag gacagttgta aggtactcga atccaggcag atccagattc ttcagcatca 721 gtgtagagat tccgtctggg aacagcacct tgcgcgactt ggcgccacgg atgacattcg 781 tagcttcgtg cacggtaatt tgtgatggct gtccagcggc acagagatca cggatacgac 841 gaatggctcc ccttcaagcc ttgcctaagg aaaatacctc acaaataacc agaaatcata 901 tggtgatata tggccatttt gctgatcgaa gttttgccaa cacacccaaa gaaatttgtg 961 tgcgtgtgta tatacgtgtg cgtacattag cagagaatat gagagaaaga agataataag 1021 aaagagaata caaacaaaaa tctgacatcc taataacctc agacctgggc ggctgttaac 1081 agctgttcgc ttgagaccac cttgttaaat ccgccttggg tgaagggtat aaaaatttaa 1141 ttttacaaaa ttccactcaa aactgtttgg ggattttttt tgcgaaattg atctaatttt 1201 ggggattttc ggggacaagg gattgaaaag tattggcaac actgatgtca agagttgggc 1261 cccttattcg gggtattccc attatgtgtt atctatcatg tcagttactt gataatgcaa 1321 aagaaaaagc ttttgttgtc tacttaacaa aaataagaag aaaccaatgt cggtcgtata 1381 attcagtctg gcagtattat ttgtggaggc aatactacta ttttttgtat ggtgcatgtc 1441 gtataactct ggataatttg cggttaatgt tatcgaaaga caaacagaat taaacctaca 1501 cagtgtatac aattcaattg ttgattaacg atcgcaacaa caaaatgcct ggcctgcaac 1561 tgatgtgccc tgtgtgcacg gaagatttcc aagaagccga cgatattcac gtaacaaatt 1621 gtgggcattt gtatcacttc tcatgcatgg aggactggcg gaccagggca aacagctgtc 1681 cccaatgccg cctagaaaat cccaacacat ataaagtata tctcgtactt agtgaaggga 1741 atgaaacatc tgctcccagt gaggaagatg aagacctgca tgcgaaactg gaatcctctg 1801 cagagaaaat aaatgaattg caagcattgt tggatgagtc agaactaaat atgttccaca 1861 tccaagagca atacacagtg gagcaagatc taaggaaaaa acttgagcat aaaattgccg 1921 agaatgccaa ctacgaagag aacttctacc aactacacca ccagttttcg gaatcagaag 1981 aacgagtcaa acttctgaag gaggacaacg aacgtttgat cattgagaaa gaacaaagtg 2041 ccgagaaact tttcttaaag gcaaaagagt tatccatgct acagcaatca ttgaacgccg 2101 caaccaaggc ccattccgaa gcacagttaa ttgattacac agcacaatgt tcgcaatatg 2161 aagatcgcct taaactactg cagcaagaaa taaaacaatt aaccctggac aatgaataca 2221 aatcaaagga tatcgcttta aagatccgtg aaattgcagc tctcagagtt ttccgacagg 2281 gtaatactga cccaagcaat aaacaattga caaatactaa atgcattctt gacatggagc 2341 aaaagctaaa agacataacc gcccaactgg agaaagagat agcaaatagc acgcaactct 2401 ccatagacaa aataatattg cagagccaaa ttcagcgaat ggaattgcag atgaggggca 2461 ctcaagaagc gcctcgtaac gaacaatgtg agttagtaga tgatgccgca atcaacgttg 2521 acgatgattc aaacaaaaac aaagcaagcg tttcgaataa gaccgcactt ctacacacca 2581 taaatgataa cgagctaagt gagggtactg cccgaagtgt agtactccaa aaattcccct 2641 tcctagaact tcaaccatcg ctggaggagg ttataatatc aattgctgca aaaatggacg 2701 tggtcataag caaaggagac atcgtaaagg ttgggactat aggaacctct gctaaatccc 2761 ctaaaattcc caagcaagtc agtgtttacg tcgagtttgc ttccgatgat ttgaagtggc 2821 gtttactcgc caacggacat ctgcttaaaa gagacgaaac attcaaagcc gtgaacatag 2881 ctgagtatat ggatcgcaaa ctgcatgcca tattcttgta cgccaataga aaactgcgcg 2941 gtgtgctctt cgactacatt acttgccgca acaataccat aatagcgaag aaaactgccc 3001 aggatgcgga tactttgata atttacagca aggaacaggt ggacgagttg cttaaaatca 3061 gcaatccgcc catgaaagtg tctaagccta ctaccaatgc aacaaaaaag gcccctaagg 3121 ttattaacga aggatattag gactgtgtac atatgtattg tattgggttg cccaaaaagt 3181 aattgcggat tttttaagag aaagtaaatg catttttaat