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LOCUS XM_059367789 2828 bp mRNA linear INV 02-SEP-2023 (LOC106086341), transcript variant X3, mRNA. ACCESSION XM_059367789 VERSION XM_059367789.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2828 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2828 /gene="LOC106086341" /note="RNA-binding protein Ro60; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106086341" CDS 752..2548 /gene="LOC106086341" /codon_start=1 /product="RNA-binding protein Ro60" /protein_id="XP_059223772.1" /db_xref="GeneID:106086341" /translation="MTEMDAKAKLKRFCYLGSFHPVYMHLRGPIAVEKYWPIVSELVK QLNDEVMLPFLKDILNDNSLVRRDEVLFVYAVYLASEIDIKWKTTLRIAFAPLMRTDD DLFLFCDLSMRIAKLQNHKGFSRTVRKAIKAWYEMQTPDAIRTMWMAHRGLHGFTHKS LIKLCHISDGTLGSTTVSTLFFKTCTELLKETETEANAVGTPPAMDNATANEGGVSTD TNANETKANNLNSQSQEQQHQTNTQPQQTTTQPQQPNPQPPQSNATSNPPTSEDLATA VSKLRITKKNHDALKIIRKYKLPYQQVPGHFLSYAPIMAQLIPTMSYMQVLKCWRRMG QNKHLENQRIFKLCKARLENKELARKTNVHPVHILINMHNIGVISGDMSKLPSKKVES YKMDYLDKLYRDSFQWQSGVGKLRMHITVNLQSNYKKKFLKNHRKLTYFDACLALSFG YSKREALVDVFHWYEDKMKLKKIVFEKDYTTHLGFTSYAVVENQKNNQRLVTPILNAL SSQQVYDVFLCIVPTAGRGNPNQNSEFLCKFLDKYRETKNPNAKFIILDLLRFKPSMS YSETRNENILEICGLDEHTPDLIHNFATQRFE" polyA_site 2828 /gene="LOC106086341" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caacacttgt ttgtgttggt ccatcttcaa tttctgacat tcattcattc acgcaaaaat 61 gaatgttctt catgtttgct gattcccgat agaacgcaaa aacaacataa aaaaacggga 121 tagcaaaagt agaaatttgt gtatgttttc ttttgctgct gctgctgctg ctgctctagg 181 aagtgcgtgt gtgtgtgtgc gtcagtgatt gctgatagat tgcaaaggaa ttccatacaa 241 aaaaagaaga cggttgttaa tagtccgctc ggcgttcttg ttggatttat tcaagccttg 301 gctgctataa acacggttgg cttctcttca gacgcagttg gaaggaagta aagaggtata 361 gattagaaag ccgagagcaa aacaaattca attttttttg tgtgtggctc tgtcgccagc 421 aagcgcaggc aggcaggcaa acaaattttg caaagtacac gaacagcgcc ccatttatga 481 attgaaaact gctgaaaggc tgacgcagca aaagaagaag cgacccgtgg ccgtttaaag 541 ttttggtgtt ttgttttaat catcgcttca tcattgtcta ttagtggacg acacggaacg 601 gttgggtttt gtttgtgtgc gtttccttct ttgcggcaaa tttgcttaga agaggcaacg 661 gacgtttgtc atcaaacgca gaacagttaa agcacatttt gcttattcca acttcaaggt 721 ttttaaattt tgaacatttg tagcttccaa catgactgaa atggatgcca aagcgaaact 781 taagcgcttc tgttacttgg gctcattcca tcccgtctat atgcatttga ggggacccat 841 tgctgttgaa aaatattggc caattgtcag tgagttggtt aaacaattga atgatgaagt 901 gatgctgcca ttcctcaagg acatcttaaa tgacaattcg ctggttcgaa gagatgaggt 961 tttgtttgtg tatgccgtct atctggcctc cgaaatcgac atcaaatgga agactacgtt 1021 acgcatagca tttgctccgc tcatgcgcac cgatgatgat ctctttttgt tttgtgacct 1081 ctcaatgcgc atagccaaat tgcagaatca caagggattt tcgagaacag tgcgcaaagc 1141 cattaaggca tggtatgaaa tgcaaacacc cgatgccata cgaacaatgt ggatggcaca 1201 tcgaggttta catggtttca cacataaatc tctgataaaa ttgtgtcaca tctccgatgg 1261 cactttgggt tccacaactg tgtcgacgtt gttctttaag acttgcaccg aactgcttaa 1321 ggaaaccgaa accgaagcta acgccgtcgg cactccacct gcaatggata atgcaacagc 1381 caatgaaggg ggagtatcca ccgataccaa tgccaatgaa actaaagcca ataatttgaa 1441 tagccaatca caagaacaac aacatcagac taatactcaa ccacaacaaa caaccactca 1501 accacaacaa ccaaacccac aaccaccaca atcgaatgca acttcaaatc caccaacttc 1561 tgaagactta gccactgcag tttccaaatt gcgcatcacc aagaaaaatc atgatgcctt 1621 gaagattata cgcaaataca aattgcccta tcaacaagtt cctggacact ttttgagtta 1681 tgcccctatc atggctcagc ttatacccac catgtcctat atgcaagtgc tcaagtgttg 1741 gcgccgcatg ggtcaaaaca aacacttgga gaatcaaaga attttcaagt tgtgcaaggc 1801 tcgcctggag aataaagagt tggctcgcaa gaccaacgtt catccggtgc acattttgat 1861 aaatatgcac aacattggtg taattagtgg cgatatgtcc aagttgccct ccaaaaaggt 1921 ggaatcctat aaaatggatt atttggacaa gttgtatcgg gactcgtttc aatggcaatc 1981 gggcgtagga aagctacgca tgcacatcac cgtgaatttg cagagcaact ataagaaaaa 2041 gttcttaaag aaccatcgca agttgacata ctttgatgcc tgtttggcct tatcatttgg 2101 ctattcgaaa cgtgaggctt tggtggatgt tttccactgg tacgaggata aaatgaaact 2161 aaagaaaata gtctttgaaa aggactatac cactcatttg ggctttacct cgtatgctgt 2221 ggttgagaac caaaagaaca accaacgttt agtcacccct attttgaatg ctttgtcaag 2281 ccagcaagtc tatgacgtat tcttgtgcat agttccaacg gctggccgtg gtaatccaaa 2341 tcaaaattcg gagtttcttt gcaagttttt ggacaaatat cgtgaaacaa aaaatccaaa 2401 tgctaaattt attatattgg atttgttgcg tttcaaacca tccatgagct actctgaaac 2461 tcgcaatgag aatatattgg aaatttgtgg cttagatgag cacactccag atcttataca 2521 caactttgca acgcagcgct tcgagtaagg cggcagagag agagagagga aaacgaacgc 2581 aaaaaagcga aaatattgta gttgtgcata gatgcaagaa ctcacataca tacccaaacc 2641 cccacataca gagatataaa aagcctgatg ggaatttttt tcgaatgaaa attaaatttt 2701 aagattttcc ctttttttac acttgtttta agaattagtt tttctttatt tttatttttt 2761 ttttaagctt taagttgaaa atgaatacaa tttttttatt tcattttact ataacaaatg 2821 aaaggaca