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LOCUS XM_059367788 3009 bp mRNA linear INV 02-SEP-2023 (LOC106086341), transcript variant X2, mRNA. ACCESSION XM_059367788 VERSION XM_059367788.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3009 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3009 /gene="LOC106086341" /note="RNA-binding protein Ro60; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106086341" CDS 727..2523 /gene="LOC106086341" /codon_start=1 /product="RNA-binding protein Ro60" /protein_id="XP_059223771.1" /db_xref="GeneID:106086341" /translation="MTEMDAKAKLKRFCYLGSFHPVYMHLRGPIAVEKYWPIVSELVK QLNDEVMLPFLKDILNDNSLVRRDEVLFVYAVYLASEIDIKWKTTLRIAFAPLMRTDD DLFLFCDLSMRIAKLQNHKGFSRTVRKAIKAWYEMQTPDAIRTMWMAHRGLHGFTHKS LIKLCHISDGTLGSTTVSTLFFKTCTELLKETETEANAVGTPPAMDNATANEGGVSTD TNANETKANNLNSQSQEQQHQTNTQPQQTTTQPQQPNPQPPQSNATSNPPTSEDLATA VSKLRITKKNHDALKIIRKYKLPYQQVPGHFLSYAPIMAQLIPTMSYMQVLKCWRRMG QNKHLENQRIFKLCKARLENKELARKTNVHPVHILINMHNIGVISGDMSKLPSKKVES YKMDYLDKLYRDSFQWQSGVGKLRMHITVNLQSNYKKKFLKNHRKLTYFDACLALSFG YSKREALVDVFHWYEDKMKLKKIVFEKDYTTHLGFTSYAVVENQKNNQRLVTPILNAL SSQQVYDVFLCIVPTAGRGNPNQNSEFLCKFLDKYRETKNPNAKFIILDLLRFKPSMS YSETRNENILEICGLDEHTPDLIHNFATQRFE" polyA_site 3009 /gene="LOC106086341" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caacacttgt ttgtgttggt ccatcttcaa tttctgacat tcattcattc acgcaaaaat 61 gaatgttctt catgtttgct gattcccgat agaacgcaaa aacaacataa aaaaacggga 121 tagcaaaagt agaaatttgt gtatgttttc ttttgctgct gctgctgctg ctgctctagg 181 aagtgcgtgt gtgtgtgtgc gtcagtgatt gctgatagat tgcaaaggaa ttccatacaa 241 aaaaagaaga cggttgttaa tagtccgctc ggcgttcttg ttggatttat tcaagccttg 301 gctgctataa acacggttgg cttctcttca gacgcagttg gaaggaagta aagaggtata 361 gattagaaag ccgagagcaa aacaaattca attttttttg tgtgtggctc tgtcgccagc 421 aagcgcaggc aggcaggcaa acaaattttg caaagtacac gaacagcgcc ccatttatga 481 attgaaaact gctgaaaggc tgacgcagca aaagaagaag cgacccgtgg ccgtttaaag 541 ttttggtgtt ttgttttaat catcgcttca tcattgtcta ttagtggacg acacggaacg 601 gttgggtttt gtttgtgtgc gtttccttct ttgcggcaaa tttgcttaga agaggcaacg 661 gacgtttgtc atcaaacgca gaacagttaa agcacatttt gcttattcca acttcaagct 721 tccaacatga ctgaaatgga tgccaaagcg aaacttaagc gcttctgtta cttgggctca 781 ttccatcccg tctatatgca tttgagggga cccattgctg ttgaaaaata ttggccaatt 841 gtcagtgagt tggttaaaca attgaatgat gaagtgatgc tgccattcct caaggacatc 901 ttaaatgaca attcgctggt tcgaagagat gaggttttgt ttgtgtatgc cgtctatctg 961 gcctccgaaa tcgacatcaa atggaagact acgttacgca tagcatttgc tccgctcatg 1021 cgcaccgatg atgatctctt tttgttttgt gacctctcaa tgcgcatagc caaattgcag 1081 aatcacaagg gattttcgag aacagtgcgc aaagccatta aggcatggta tgaaatgcaa 1141 acacccgatg ccatacgaac aatgtggatg gcacatcgag gtttacatgg tttcacacat 1201 aaatctctga taaaattgtg tcacatctcc gatggcactt tgggttccac aactgtgtcg 1261 acgttgttct ttaagacttg caccgaactg cttaaggaaa ccgaaaccga agctaacgcc 1321 gtcggcactc cacctgcaat ggataatgca acagccaatg aagggggagt atccaccgat 1381 accaatgcca atgaaactaa agccaataat ttgaatagcc aatcacaaga acaacaacat 1441 cagactaata ctcaaccaca acaaacaacc actcaaccac aacaaccaaa cccacaacca 1501 ccacaatcga atgcaacttc aaatccacca acttctgaag acttagccac tgcagtttcc 1561 aaattgcgca tcaccaagaa aaatcatgat gccttgaaga ttatacgcaa atacaaattg 1621 ccctatcaac aagttcctgg acactttttg agttatgccc ctatcatggc tcagcttata 1681 cccaccatgt cctatatgca agtgctcaag tgttggcgcc gcatgggtca aaacaaacac 1741 ttggagaatc aaagaatttt caagttgtgc aaggctcgcc tggagaataa agagttggct 1801 cgcaagacca acgttcatcc ggtgcacatt ttgataaata tgcacaacat tggtgtaatt 1861 agtggcgata tgtccaagtt gccctccaaa aaggtggaat cctataaaat ggattatttg 1921 gacaagttgt atcgggactc gtttcaatgg caatcgggcg taggaaagct acgcatgcac 1981 atcaccgtga atttgcagag caactataag aaaaagttct taaagaacca tcgcaagttg 2041 acatactttg atgcctgttt ggccttatca tttggctatt cgaaacgtga ggctttggtg 2101 gatgttttcc actggtacga ggataaaatg aaactaaaga aaatagtctt tgaaaaggac 2161 tataccactc atttgggctt tacctcgtat gctgtggttg agaaccaaaa gaacaaccaa 2221 cgtttagtca cccctatttt gaatgctttg tcaagccagc aagtctatga cgtattcttg 2281 tgcatagttc caacggctgg ccgtggtaat ccaaatcaaa attcggagtt tctttgcaag 2341 tttttggaca aatatcgtga aacaaaaaat ccaaatgcta aatttattat attggatttg 2401 ttgcgtttca aaccatccat gagctactct gaaactcgca atgagaatat attggaaatt 2461 tgtggcttag atgagcacac tccagatctt atacacaact ttgcaacgca gcgcttcgag 2521 taaggcggca gagagagaga gaggaaaacg aacgcaaaaa aggtattaaa acgaaattcg 2581 aataattagt ttaaggaaag catatatcgt aaaaagtaaa atattatcat gaaagcgaat 2641 attcaattca actacgtaca tacatacaag cataggcata tatatgaaca atatattaat 2701 atattacatg ctttattctt cttcttcttc taaacatata ctaatattaa atgctaaaca 2761 atatttagcg aaaatattgt agttgtgcat agatgcaaga actcacatac atacccaaac 2821 ccccacatac agagatataa aaagcctgat gggaattttt ttcgaatgaa aattaaattt 2881 taagattttc ccttttttta cacttgtttt aagaattagt ttttctttat ttttattttt 2941 tttttaagct ttaagttgaa aatgaataca atttttttat ttcattttac tataacaaat 3001 gaaaggaca