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LOCUS XM_059367514 6200 bp mRNA linear INV 02-SEP-2023 (LOC106090289), transcript variant X3, mRNA. ACCESSION XM_059367514 VERSION XM_059367514.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6200 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6200 /gene="LOC106090289" /note="inactive rhomboid protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106090289" CDS 339..5861 /gene="LOC106090289" /codon_start=1 /product="inactive rhomboid protein 1" /protein_id="XP_059223497.1" /db_xref="GeneID:106090289" /translation="MLSPKANQLCSNIGSCESDHHHNQMHASHGHAHAHNNGQQQQQM HQHQHMHQHQHQHQHQQQQHQHQQAPPMQMSMQMQMQQPPQQQQQPQQQHQHQHPHQH LSTVIGRRGSSSNVLPPHMAQMSISSSSGNGGAACSMGMGGGGNGGSGGGGNSTLRRK SSLSYQQQLMGNTLQCSSDITTDCGTEISPGHFSPHPNELYLHHPHHQSHVKLSLQPM ERYDDSLACSLPPPSPAPNSDRFIDGNCVVSPPNGHNDADDHVMSHHQQQTLSSSTSN SSISTGLGSCSSSMAAAAGCGPMNASLQRVSGHHALKYGQNAMNAMQRSASPNTSRYR LNPDRYRDMSSAQVSSNSPSNNPNSAATVVPNSGRYINTSSHFLKNCPTSLVPTDTYS YLSSTAHTPVKRYVPTPPPPHELYVADHHHHGYKSHSHGQATTTQPAQYTGPTATAIT TKCGPQSSSSPSTLPYRNRNLKCCSSDQMAELQAPSGITAMTQQQSNKDHYASSPRIR NNNYSGSNGGGGMMTGKIISGKDSPVVHLSEVQGSVIAATGHPYNKTVSMMTTQCSVV TQPHMVATITAVGCVSSPQSSLNITSTVARSQLPTYNTRNVASGNGMCSLINDMQEMS SISATSNASEMSLSTGASGCNPNNVMRKEDGSSSSTAANGLVLSSGANSTSATCLHCK TVRRTTGVHQTTQTTGPISPVPQMMPTPMSATAASNMISSSSSSSTSTSNQRYVEQQL AAANITMTLTPTTTEANHLTPLTPPSNGVATAMQPAIVNRMLNNKKQEMVNEQMYTQL KAASNQIVQQQQQQQAQQQQMLMSEQQSHHHQLHQHQQQQQQQQLQQLQQQQLQQSPQ QAQQPQTSAMEQHYMAPSSLRPYSQPQVAQVVSQSTQQMPAQPQQQTQQTAASTMGQQ QQQPQQQQQQQQQQRYSCKKRFTEYMRREVMRFFGVEMSTEAEDFALWQGRQRRLALR RFGTLKNESSDLPEGCNIDGSNGGAGAMAHHNMHCSGFNNAGQHQHHYHNHHHHHHHN HHNHHHATERPDILPIQDTEDDDALAQEGGANGGAVRRRGLRDHYHHPYYNIDFRAGD YVERKPSVMCMLVSGISFIVNTLNKRQIRFKRRRQWSRSFAPAHVQNTASTNADGSAS NNEIYEGALPEDEVFFDSPPGMDANSAASGSAGTPAAGANSGSTVRSAANVDRQMFIT AERNQQGWRTSNMMGHNGSGSIQQAVVLHGSSDQETSPQQQQQQQQMQQLQQQVPGMR ANRISSQILDGVLENSRRPVSQKIKLFCVNDLDDRTDHRPFFTYWINTVQIIVLFLSL LCYGIGPIGFGLEQRTGQVLVTSLSLQTVQHTEQRNIWIGPRNQDLVHMGAKFATCMR RDVKIIDVMMKTRRQERETACCIRNDDSGCVQSSQADCSVRGLFPTKSISTWKKWSPG ESGPGGRISGSVCGLDPKYCDAPASIAPYEWPDDITKWPICRKTNSFSQRFRFKDHTA EHMVCEVIGHPCCAGIYGECRITTREYCDFVNGYFHEEASLCSQISCLNNVCGMFPFV NVEVPDQFYRLFTSLCMHAGILHLMITVIFQHVFLADLERLIGPIRTAILYIGSGLAG NLTSAVLMPYKPEVGPLASLSGVIASLMVLLILSHWQHLHKPHVALFKLMVIGAILLA IGTLPWQLNFAGIFAGIFSGIFLTIALVPFVSVTKYRRKSKINLIWFCIIFHIFVYTT MLIIFYMFPTELTKLSFGEVLTNSFNTGVPGGNGATGSGGGGNVGTGSPGISTTDIMR TGISNSNNNNNNNNNNYNRQSFMHQQPQYHYHHQSDDIIINNVAAVATATLAPYIQ" polyA_site 6200 /gene="LOC106090289" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggcaaaagg acgatgagca aaacattaca cagcacaaac aaaagaacat ttattcaaaa 61 ttttaccata aatagttaac taataaataa caaatgtata taattgtaat aaataacaag 121 tctagcatta gaattcaata aaattaagat gattttgtga caaaaaccaa acgaaaaaac 181 caatgcaaaa attcaactcc tcaaaattgg atgtcgcgaa aactgttttc ccaactcgaa 241 cgtgaacgtg agcgagcagt agcagtagca gcagcaccag caccagcagt accagtgaga 301 aatcgatacg acgatgaata tttacgacca tacgaagcat gctttcgcca aaagccaatc 361 aactctgctc taatatcggt agctgtgaat cggatcatca ccacaatcaa atgcatgcat 421 cgcatggcca tgcgcatgcc cacaataatg gccaacaaca gcaacagatg catcagcatc 481 aacacatgca tcagcatcaa caccagcatc agcaccaaca gcagcagcac cagcatcaac 541 aggcgccacc gatgcaaatg tcaatgcaaa tgcagatgca acagccacca caacaacagc 601 agcagccaca gcaacagcat caacatcaac accctcacca acatttgtca acggttatag 661 gtagacgtgg cagcagcagc aatgtgctgc caccccatat ggcccaaatg tcaatcagca 721 gcagtagcgg caatggtggt gctgcctgca gtatgggcat gggtggtggt ggtaacggtg 781 gcagtggcgg cgggggaaat tccaccctga ggcgcaaatc atccttgagc taccagcagc 841 aattgatggg caacacattg caatgcagtt cggacataac aaccgattgt ggcaccgaaa 901 tctcccccgg ccatttcagt ccacatccca atgagctgta tttgcatcat ccacaccacc 961 aatcacatgt gaaactaagt ctgcaaccca tggagagata tgacgactca ttggcctgca 1021 gtttgccacc accctcgccg gcgcccaaca gcgatcgctt tatcgatggc aattgtgtgg 1081 tctcgccacc caatggccac aacgatgcag acgatcatgt catgtctcat caccagcaac 1141 aaacactgtc atcttccacc tcaaactcct caatatccac gggattgggt agctgctcct 1201 cgtccatggc ggcggcagcc ggttgcggac ccatgaatgc ttcgctgcaa cgcgtcagcg 1261 gccatcatgc tctgaaatat ggccaaaatg ccatgaatgc catgcaacgc tccgcatcgc 1321 ccaatacgag tcgttatcgc ctcaaccccg atcgctatcg tgatatgagt tcggctcaag 1381 ttagttcgaa ttcaccctcg aataatccaa actcagctgc cacagtggtg ccaaattcgg 1441 ggcgttatat caacacgtcg agtcacttcc tgaaaaactg tcccacatcc ctggtgccga 1501 cagacacata ttcatatttg tcttcgacgg ctcacacgcc ggtcaaacgc tatgttccca 1561 ccccaccacc accccatgaa ctgtatgtgg ccgaccacca ccatcatggc tacaagagcc 1621 atagccatgg ccaagccacc accacacaac cagctcaata taccggtccc acggcgactg 1681 cgatcacaac gaaatgcgga ccccaatcct cctcttcacc cagtacactg ccatatcgca 1741 atcgaaatct caaatgctgt tcatccgacc aaatggccga actgcaagcg ccgtcgggga 1801 tcactgctat gacgcagcaa caaagcaaca aagaccatta cgcttcatcg ccacgcatac 1861 ggaataataa ttacagtggg agtaatggtg gtgggggcat gatgacaggt aaaatcatct 1921 cgggcaagga ctcgccagtg gtgcacctca gcgaggtgca gggcagtgtc atagccgcca 1981 ccggccatcc ctacaataaa acggtcagca tgatgaccac ccagtgcagt gtggtcaccc 2041 aaccgcatat ggtggccacc atcactgcgg tgggctgtgt cagttcgccc cagtccagcc 2101 tgaacatcac cagcaccgta gcgcgttctc aactgccaac atacaacact cgcaatgtcg 2161 ccagcggcaa cggcatgtgt tccctgatca atgatatgca agaaatgtct tctataagtg 2221 ccacatccaa tgccagcgag atgagtctct cgactggcgc ctccggctgt aatcccaaca 2281 atgtcatgcg caaagaggac ggcagcagca gcagcacagc ggccaacgga ctggtgctca 2341 gttcgggggc gaactcgacc tcggccactt gcttgcattg caagactgtg cgacgtacca 2401 cgggtgttca ccagaccaca cagacaactg gacccattag cccagtgcct cagatgatgc 2461 cgacaccgat gtcggcaacg gcggccagca acatgataag cagctcctcc agttccagca 2521 ccagcactag caatcaaagg tatgtggagc aacagctagc ggcggcgaac ataacgatga 2581 ccttgacacc caccaccacg gaagcgaacc acttgacacc cctgacgccg cctagcaatg 2641 gggtagcaac ggcaatgcag ccagccattg ttaatcgcat gctcaacaac aaaaaacagg 2701 aaatggtcaa cgaacaaatg tacactcagc tgaaggcggc cagcaatcaa attgtgcagc 2761 agcagcaaca gcaacaggcc caacaacaac aaatgctaat gagcgagcag caaagtcatc 2821 atcatcaact gcatcagcac cagcagcagc aacagcaaca acagctgcag cagctacaac 2881 agcaacagtt gcagcaatcg ccacagcaag cccagcaacc ccagacctca gctatggaac 2941 agcattatat ggcgccctca tcgctaagac cctacagtca gcctcaggtg gctcaggtgg 3001 tcagccagag tacacaacaa atgccagcgc agccacagca acaaacgcag caaacggctg 3061 ccagcaccat gggccagcag caacagcaac cgcagcaaca acaacagcag cagcaacaac 3121 aacgctactc ctgcaaaaaa cgcttcaccg agtacatgcg acgtgaggtg atgcgcttct 3181 ttggcgtcga aatgtctaca gaagctgagg acttcgcctt gtggcagggc cggcaacgcc 3241 gtctggccct gcgacgcttt ggcaccctga aaaacgaatc ttccgatttg cccgagggct 3301 gcaacataga tggcagcaat ggcggtgcgg gtgccatggc tcatcataac atgcactgct 3361 ccggtttcaa caatgcgggt caacatcagc atcactatca caatcatcat caccaccacc 3421 accacaacca tcacaatcac catcatgcca cagagcgacc agacatactg cccatacagg 3481 acaccgagga cgatgacgca ctggcccagg agggcggtgc caatgggggt gcggtgcgac 3541 gacgaggcct gcgtgatcat tatcatcatc cctattacaa catagacttc cgggccggcg 3601 actatgtgga gcgcaaaccc tcggtgatgt gtatgctggt ttcaggcatt agcttcatag 3661 tcaacactct caacaagcgt cagattcgtt tcaagcgacg tcgccagtgg tctcgcagct 3721 ttgctcccgc tcatgttcag aacacggcca gcacgaatgc cgatggttct gcctcgaata 3781 atgagatata cgagggagcc ttgccggagg atgaggtctt tttcgattcg ccacccggca 3841 tggatgccaa ttcggcggca tcgggttcag cgggcacccc agcggctggg gccaacagtg 3901 gatcaacggt gcgcagcgcc gccaatgtcg atcgccaaat gttcataact gccgaacgta 3961 atcaacaggg atggcgtacc agcaatatga tgggccacaa tggctcaggt agcatacagc 4021 aggctgttgt cttgcatggg tcctcggacc aggaaacctc cccccaacag cagcaacagc 4081 aacagcaaat gcaacagctt caacaacagg tgcccggcat gcgggccaat cgcatttctt 4141 cgcagatatt ggatggcgtt ctggagaact cacgccgtcc cgtatcccag aagatcaaac 4201 ttttctgtgt taatgatctc gacgatagga ccgatcatcg gcccttcttc acctattgga 4261 tcaatacggt gcaaataatt gttttatttc tatcgttgct gtgctatggc atagggccca 4321 taggctttgg tctggaacag cgcaccggcc aggtgttggt caccagtctc agtctgcaga 4381 cggtgcagca caccgagcag aggaacatct ggatagggcc gcgcaatcag gatctggtgc 4441 atatgggggc caaatttgcc acttgtatga gacgtgatgt aaaaataatc gatgtgatga 4501 tgaagacaag gcgccaggaa cgggagacgg cctgttgcat acgaaacgat gattccggtt 4561 gtgtgcagag ttcgcaggcc gattgctcag tcagagggct atttccaacg aaatccatat 4621 caacttggaa aaaatggtct cccggcgaat cgggtcctgg cggccgcata tccggttcag 4681 tttgtggcct agatcccaaa tactgcgatg cccccgcatc catagcgccc tacgagtggc 4741 ccgatgacat caccaaatgg cccatatgcc gcaaaacgaa ttcattctcg caacgttttc 4801 gttttaagga tcacaccgcc gagcatatgg tgtgcgaggt cataggccat ccctgctgtg 4861 cgggcatcta tggcgagtgt cgcattacaa ctcgcgaata ttgtgatttt gtaaatggtt 4921 atttccatga agaggcctct ctatgctcac agatctcttg tttgaacaac gtatgcggca 4981 tgttcccatt tgtaaatgtg gaagttcccg atcagttcta tcgcctcttc acatcgctgt 5041 gcatgcacgc tggtattttg catttaatga taaccgtgat atttcaacat gtgttcttgg 5101 ccgatttgga gcgtttaatt ggacccatcc gaacggccat cttgtatata ggttcgggac 5161 tagctggcaa tttgacaagt gccgtcttaa tgccctataa accagaggtg ggtcccctcg 5221 catcactctc gggtgttata gcatctctaa tggtactgtt aatactatca cattggcaac 5281 acttacacaa gccacatgtg gctctattta agctgatggt aataggtgcc atactcctcg 5341 ctattggaac gctgccatgg caactgaatt ttgccggtat ttttgcgggt atattcagcg 5401 gtatatttct aacaatagct ttagtaccat tcgttagtgt caccaaatat cgacgtaaat 5461 caaagataaa tttaatatgg ttttgtatta tattccacat attcgtttat accacaatgt 5521 taataatttt ctatatgttc cccactgaat taacaaagct aagtttcgga gaggtgctca 5581 cgaatagttt taatactggt gtaccagggg gcaatggcgc cacaggcagt ggtggtggcg 5641 gtaatgtggg caccggttcg ccgggcataa gcacaactga tattatgcgc acaggcattt 5701 caaacagcaa caataacaat aataacaaca ataataatta taatcgtcag tcatttatgc 5761 atcaacagcc ccaatatcat tatcaccatc aatcggatga tataataata aataatgttg 5821 ccgctgtggc gacggcaacc ctggcaccct acatacagta acgaaccccc taatggtgaa 5881 tttgacaaaa aacagacgcg cacttttttc ggtttatctt aagttactat gtacttctta 5941 ccaagtaata ataattaata ataataatta taatataaag aaaaacaaca acaaaaacaa 6001 acattaaaac aacaaaacaa atgacaacaa caacaaagac aacacacgta taggtaacgc 6061 gggtgtgaca attcaccatt tctatcaaac aacaacaaca acaagaacaa aaaaaaaacc 6121 aaaacaaaca acaacagatt atttgtcaaa agaattaaga ataaataaaa ttattataaa 6181 taaatataaa aaaaacatta