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LOCUS XM_059367513 6140 bp mRNA linear INV 02-SEP-2023 (LOC106090289), transcript variant X2, mRNA. ACCESSION XM_059367513 VERSION XM_059367513.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6140 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6140 /gene="LOC106090289" /note="inactive rhomboid protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106090289" CDS 279..5801 /gene="LOC106090289" /codon_start=1 /product="inactive rhomboid protein 1" /protein_id="XP_059223496.1" /db_xref="GeneID:106090289" /translation="MLSPKANQLCSNIGSCESDHHHNQMHASHGHAHAHNNGQQQQQM HQHQHMHQHQHQHQHQQQQHQHQQAPPMQMSMQMQMQQPPQQQQQPQQQHQHQHPHQH LSTVIGRRGSSSNVLPPHMAQMSISSSSGNGGAACSMGMGGGGNGGSGGGGNSTLRRK SSLSYQQQLMGNTLQCSSDITTDCGTEISPGHFSPHPNELYLHHPHHQSHVKLSLQPM ERYDDSLACSLPPPSPAPNSDRFIDGNCVVSPPNGHNDADDHVMSHHQQQTLSSSTSN SSISTGLGSCSSSMAAAAGCGPMNASLQRVSGHHALKYGQNAMNAMQRSASPNTSRYR LNPDRYRDMSSAQVSSNSPSNNPNSAATVVPNSGRYINTSSHFLKNCPTSLVPTDTYS YLSSTAHTPVKRYVPTPPPPHELYVADHHHHGYKSHSHGQATTTQPAQYTGPTATAIT TKCGPQSSSSPSTLPYRNRNLKCCSSDQMAELQAPSGITAMTQQQSNKDHYASSPRIR NNNYSGSNGGGGMMTGKIISGKDSPVVHLSEVQGSVIAATGHPYNKTVSMMTTQCSVV TQPHMVATITAVGCVSSPQSSLNITSTVARSQLPTYNTRNVASGNGMCSLINDMQEMS SISATSNASEMSLSTGASGCNPNNVMRKEDGSSSSTAANGLVLSSGANSTSATCLHCK TVRRTTGVHQTTQTTGPISPVPQMMPTPMSATAASNMISSSSSSSTSTSNQRYVEQQL AAANITMTLTPTTTEANHLTPLTPPSNGVATAMQPAIVNRMLNNKKQEMVNEQMYTQL KAASNQIVQQQQQQQAQQQQMLMSEQQSHHHQLHQHQQQQQQQQLQQLQQQQLQQSPQ QAQQPQTSAMEQHYMAPSSLRPYSQPQVAQVVSQSTQQMPAQPQQQTQQTAASTMGQQ QQQPQQQQQQQQQQRYSCKKRFTEYMRREVMRFFGVEMSTEAEDFALWQGRQRRLALR RFGTLKNESSDLPEGCNIDGSNGGAGAMAHHNMHCSGFNNAGQHQHHYHNHHHHHHHN HHNHHHATERPDILPIQDTEDDDALAQEGGANGGAVRRRGLRDHYHHPYYNIDFRAGD YVERKPSVMCMLVSGISFIVNTLNKRQIRFKRRRQWSRSFAPAHVQNTASTNADGSAS NNEIYEGALPEDEVFFDSPPGMDANSAASGSAGTPAAGANSGSTVRSAANVDRQMFIT AERNQQGWRTSNMMGHNGSGSIQQAVVLHGSSDQETSPQQQQQQQQMQQLQQQVPGMR ANRISSQILDGVLENSRRPVSQKIKLFCVNDLDDRTDHRPFFTYWINTVQIIVLFLSL LCYGIGPIGFGLEQRTGQVLVTSLSLQTVQHTEQRNIWIGPRNQDLVHMGAKFATCMR RDVKIIDVMMKTRRQERETACCIRNDDSGCVQSSQADCSVRGLFPTKSISTWKKWSPG ESGPGGRISGSVCGLDPKYCDAPASIAPYEWPDDITKWPICRKTNSFSQRFRFKDHTA EHMVCEVIGHPCCAGIYGECRITTREYCDFVNGYFHEEASLCSQISCLNNVCGMFPFV NVEVPDQFYRLFTSLCMHAGILHLMITVIFQHVFLADLERLIGPIRTAILYIGSGLAG NLTSAVLMPYKPEVGPLASLSGVIASLMVLLILSHWQHLHKPHVALFKLMVIGAILLA IGTLPWQLNFAGIFAGIFSGIFLTIALVPFVSVTKYRRKSKINLIWFCIIFHIFVYTT MLIIFYMFPTELTKLSFGEVLTNSFNTGVPGGNGATGSGGGGNVGTGSPGISTTDIMR TGISNSNNNNNNNNNNYNRQSFMHQQPQYHYHHQSDDIIINNVAAVATATLAPYIQ" polyA_site 6140 /gene="LOC106090289" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caccacgaaa tgaaggatat aaatttgttg tgcgtgtggc agaagtgaaa agaaaaaaat 61 ttttccccga aaactgaagg tcgccctaaa gtgtaaagtt ttttgcctac acggaacgga 121 ctatggacat tttttgcaaa aagaaaagaa cataagtgaa gatattgtga aaaacataac 181 tcaatcaagc caaaaaaaga aaacataaat aagcaataag gacattttgc aatgtggaca 241 atttctctac aaatggaata tttacgacca tacgaagcat gctttcgcca aaagccaatc 301 aactctgctc taatatcggt agctgtgaat cggatcatca ccacaatcaa atgcatgcat 361 cgcatggcca tgcgcatgcc cacaataatg gccaacaaca gcaacagatg catcagcatc 421 aacacatgca tcagcatcaa caccagcatc agcaccaaca gcagcagcac cagcatcaac 481 aggcgccacc gatgcaaatg tcaatgcaaa tgcagatgca acagccacca caacaacagc 541 agcagccaca gcaacagcat caacatcaac accctcacca acatttgtca acggttatag 601 gtagacgtgg cagcagcagc aatgtgctgc caccccatat ggcccaaatg tcaatcagca 661 gcagtagcgg caatggtggt gctgcctgca gtatgggcat gggtggtggt ggtaacggtg 721 gcagtggcgg cgggggaaat tccaccctga ggcgcaaatc atccttgagc taccagcagc 781 aattgatggg caacacattg caatgcagtt cggacataac aaccgattgt ggcaccgaaa 841 tctcccccgg ccatttcagt ccacatccca atgagctgta tttgcatcat ccacaccacc 901 aatcacatgt gaaactaagt ctgcaaccca tggagagata tgacgactca ttggcctgca 961 gtttgccacc accctcgccg gcgcccaaca gcgatcgctt tatcgatggc aattgtgtgg 1021 tctcgccacc caatggccac aacgatgcag acgatcatgt catgtctcat caccagcaac 1081 aaacactgtc atcttccacc tcaaactcct caatatccac gggattgggt agctgctcct 1141 cgtccatggc ggcggcagcc ggttgcggac ccatgaatgc ttcgctgcaa cgcgtcagcg 1201 gccatcatgc tctgaaatat ggccaaaatg ccatgaatgc catgcaacgc tccgcatcgc 1261 ccaatacgag tcgttatcgc ctcaaccccg atcgctatcg tgatatgagt tcggctcaag 1321 ttagttcgaa ttcaccctcg aataatccaa actcagctgc cacagtggtg ccaaattcgg 1381 ggcgttatat caacacgtcg agtcacttcc tgaaaaactg tcccacatcc ctggtgccga 1441 cagacacata ttcatatttg tcttcgacgg ctcacacgcc ggtcaaacgc tatgttccca 1501 ccccaccacc accccatgaa ctgtatgtgg ccgaccacca ccatcatggc tacaagagcc 1561 atagccatgg ccaagccacc accacacaac cagctcaata taccggtccc acggcgactg 1621 cgatcacaac gaaatgcgga ccccaatcct cctcttcacc cagtacactg ccatatcgca 1681 atcgaaatct caaatgctgt tcatccgacc aaatggccga actgcaagcg ccgtcgggga 1741 tcactgctat gacgcagcaa caaagcaaca aagaccatta cgcttcatcg ccacgcatac 1801 ggaataataa ttacagtggg agtaatggtg gtgggggcat gatgacaggt aaaatcatct 1861 cgggcaagga ctcgccagtg gtgcacctca gcgaggtgca gggcagtgtc atagccgcca 1921 ccggccatcc ctacaataaa acggtcagca tgatgaccac ccagtgcagt gtggtcaccc 1981 aaccgcatat ggtggccacc atcactgcgg tgggctgtgt cagttcgccc cagtccagcc 2041 tgaacatcac cagcaccgta gcgcgttctc aactgccaac atacaacact cgcaatgtcg 2101 ccagcggcaa cggcatgtgt tccctgatca atgatatgca agaaatgtct tctataagtg 2161 ccacatccaa tgccagcgag atgagtctct cgactggcgc ctccggctgt aatcccaaca 2221 atgtcatgcg caaagaggac ggcagcagca gcagcacagc ggccaacgga ctggtgctca 2281 gttcgggggc gaactcgacc tcggccactt gcttgcattg caagactgtg cgacgtacca 2341 cgggtgttca ccagaccaca cagacaactg gacccattag cccagtgcct cagatgatgc 2401 cgacaccgat gtcggcaacg gcggccagca acatgataag cagctcctcc agttccagca 2461 ccagcactag caatcaaagg tatgtggagc aacagctagc ggcggcgaac ataacgatga 2521 ccttgacacc caccaccacg gaagcgaacc acttgacacc cctgacgccg cctagcaatg 2581 gggtagcaac ggcaatgcag ccagccattg ttaatcgcat gctcaacaac aaaaaacagg 2641 aaatggtcaa cgaacaaatg tacactcagc tgaaggcggc cagcaatcaa attgtgcagc 2701 agcagcaaca gcaacaggcc caacaacaac aaatgctaat gagcgagcag caaagtcatc 2761 atcatcaact gcatcagcac cagcagcagc aacagcaaca acagctgcag cagctacaac 2821 agcaacagtt gcagcaatcg ccacagcaag cccagcaacc ccagacctca gctatggaac 2881 agcattatat ggcgccctca tcgctaagac cctacagtca gcctcaggtg gctcaggtgg 2941 tcagccagag tacacaacaa atgccagcgc agccacagca acaaacgcag caaacggctg 3001 ccagcaccat gggccagcag caacagcaac cgcagcaaca acaacagcag cagcaacaac 3061 aacgctactc ctgcaaaaaa cgcttcaccg agtacatgcg acgtgaggtg atgcgcttct 3121 ttggcgtcga aatgtctaca gaagctgagg acttcgcctt gtggcagggc cggcaacgcc 3181 gtctggccct gcgacgcttt ggcaccctga aaaacgaatc ttccgatttg cccgagggct 3241 gcaacataga tggcagcaat ggcggtgcgg gtgccatggc tcatcataac atgcactgct 3301 ccggtttcaa caatgcgggt caacatcagc atcactatca caatcatcat caccaccacc 3361 accacaacca tcacaatcac catcatgcca cagagcgacc agacatactg cccatacagg 3421 acaccgagga cgatgacgca ctggcccagg agggcggtgc caatgggggt gcggtgcgac 3481 gacgaggcct gcgtgatcat tatcatcatc cctattacaa catagacttc cgggccggcg 3541 actatgtgga gcgcaaaccc tcggtgatgt gtatgctggt ttcaggcatt agcttcatag 3601 tcaacactct caacaagcgt cagattcgtt tcaagcgacg tcgccagtgg tctcgcagct 3661 ttgctcccgc tcatgttcag aacacggcca gcacgaatgc cgatggttct gcctcgaata 3721 atgagatata cgagggagcc ttgccggagg atgaggtctt tttcgattcg ccacccggca 3781 tggatgccaa ttcggcggca tcgggttcag cgggcacccc agcggctggg gccaacagtg 3841 gatcaacggt gcgcagcgcc gccaatgtcg atcgccaaat gttcataact gccgaacgta 3901 atcaacaggg atggcgtacc agcaatatga tgggccacaa tggctcaggt agcatacagc 3961 aggctgttgt cttgcatggg tcctcggacc aggaaacctc cccccaacag cagcaacagc 4021 aacagcaaat gcaacagctt caacaacagg tgcccggcat gcgggccaat cgcatttctt 4081 cgcagatatt ggatggcgtt ctggagaact cacgccgtcc cgtatcccag aagatcaaac 4141 ttttctgtgt taatgatctc gacgatagga ccgatcatcg gcccttcttc acctattgga 4201 tcaatacggt gcaaataatt gttttatttc tatcgttgct gtgctatggc atagggccca 4261 taggctttgg tctggaacag cgcaccggcc aggtgttggt caccagtctc agtctgcaga 4321 cggtgcagca caccgagcag aggaacatct ggatagggcc gcgcaatcag gatctggtgc 4381 atatgggggc caaatttgcc acttgtatga gacgtgatgt aaaaataatc gatgtgatga 4441 tgaagacaag gcgccaggaa cgggagacgg cctgttgcat acgaaacgat gattccggtt 4501 gtgtgcagag ttcgcaggcc gattgctcag tcagagggct atttccaacg aaatccatat 4561 caacttggaa aaaatggtct cccggcgaat cgggtcctgg cggccgcata tccggttcag 4621 tttgtggcct agatcccaaa tactgcgatg cccccgcatc catagcgccc tacgagtggc 4681 ccgatgacat caccaaatgg cccatatgcc gcaaaacgaa ttcattctcg caacgttttc 4741 gttttaagga tcacaccgcc gagcatatgg tgtgcgaggt cataggccat ccctgctgtg 4801 cgggcatcta tggcgagtgt cgcattacaa ctcgcgaata ttgtgatttt gtaaatggtt 4861 atttccatga agaggcctct ctatgctcac agatctcttg tttgaacaac gtatgcggca 4921 tgttcccatt tgtaaatgtg gaagttcccg atcagttcta tcgcctcttc acatcgctgt 4981 gcatgcacgc tggtattttg catttaatga taaccgtgat atttcaacat gtgttcttgg 5041 ccgatttgga gcgtttaatt ggacccatcc gaacggccat cttgtatata ggttcgggac 5101 tagctggcaa tttgacaagt gccgtcttaa tgccctataa accagaggtg ggtcccctcg 5161 catcactctc gggtgttata gcatctctaa tggtactgtt aatactatca cattggcaac 5221 acttacacaa gccacatgtg gctctattta agctgatggt aataggtgcc atactcctcg 5281 ctattggaac gctgccatgg caactgaatt ttgccggtat ttttgcgggt atattcagcg 5341 gtatatttct aacaatagct ttagtaccat tcgttagtgt caccaaatat cgacgtaaat 5401 caaagataaa tttaatatgg ttttgtatta tattccacat attcgtttat accacaatgt 5461 taataatttt ctatatgttc cccactgaat taacaaagct aagtttcgga gaggtgctca 5521 cgaatagttt taatactggt gtaccagggg gcaatggcgc cacaggcagt ggtggtggcg 5581 gtaatgtggg caccggttcg ccgggcataa gcacaactga tattatgcgc acaggcattt 5641 caaacagcaa caataacaat aataacaaca ataataatta taatcgtcag tcatttatgc 5701 atcaacagcc ccaatatcat tatcaccatc aatcggatga tataataata aataatgttg 5761 ccgctgtggc gacggcaacc ctggcaccct acatacagta acgaaccccc taatggtgaa 5821 tttgacaaaa aacagacgcg cacttttttc ggtttatctt aagttactat gtacttctta 5881 ccaagtaata ataattaata ataataatta taatataaag aaaaacaaca acaaaaacaa 5941 acattaaaac aacaaaacaa atgacaacaa caacaaagac aacacacgta taggtaacgc 6001 gggtgtgaca attcaccatt tctatcaaac aacaacaaca acaagaacaa aaaaaaaacc 6061 aaaacaaaca acaacagatt atttgtcaaa agaattaaga ataaataaaa ttattataaa 6121 taaatataaa aaaaacatta