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LOCUS XM_059367512 6553 bp mRNA linear INV 02-SEP-2023 (LOC106090289), transcript variant X1, mRNA. ACCESSION XM_059367512 VERSION XM_059367512.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6553 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6553 /gene="LOC106090289" /note="inactive rhomboid protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106090289" CDS 692..6214 /gene="LOC106090289" /codon_start=1 /product="inactive rhomboid protein 1" /protein_id="XP_059223495.1" /db_xref="GeneID:106090289" /translation="MLSPKANQLCSNIGSCESDHHHNQMHASHGHAHAHNNGQQQQQM HQHQHMHQHQHQHQHQQQQHQHQQAPPMQMSMQMQMQQPPQQQQQPQQQHQHQHPHQH LSTVIGRRGSSSNVLPPHMAQMSISSSSGNGGAACSMGMGGGGNGGSGGGGNSTLRRK SSLSYQQQLMGNTLQCSSDITTDCGTEISPGHFSPHPNELYLHHPHHQSHVKLSLQPM ERYDDSLACSLPPPSPAPNSDRFIDGNCVVSPPNGHNDADDHVMSHHQQQTLSSSTSN SSISTGLGSCSSSMAAAAGCGPMNASLQRVSGHHALKYGQNAMNAMQRSASPNTSRYR LNPDRYRDMSSAQVSSNSPSNNPNSAATVVPNSGRYINTSSHFLKNCPTSLVPTDTYS YLSSTAHTPVKRYVPTPPPPHELYVADHHHHGYKSHSHGQATTTQPAQYTGPTATAIT TKCGPQSSSSPSTLPYRNRNLKCCSSDQMAELQAPSGITAMTQQQSNKDHYASSPRIR NNNYSGSNGGGGMMTGKIISGKDSPVVHLSEVQGSVIAATGHPYNKTVSMMTTQCSVV TQPHMVATITAVGCVSSPQSSLNITSTVARSQLPTYNTRNVASGNGMCSLINDMQEMS SISATSNASEMSLSTGASGCNPNNVMRKEDGSSSSTAANGLVLSSGANSTSATCLHCK TVRRTTGVHQTTQTTGPISPVPQMMPTPMSATAASNMISSSSSSSTSTSNQRYVEQQL AAANITMTLTPTTTEANHLTPLTPPSNGVATAMQPAIVNRMLNNKKQEMVNEQMYTQL KAASNQIVQQQQQQQAQQQQMLMSEQQSHHHQLHQHQQQQQQQQLQQLQQQQLQQSPQ QAQQPQTSAMEQHYMAPSSLRPYSQPQVAQVVSQSTQQMPAQPQQQTQQTAASTMGQQ QQQPQQQQQQQQQQRYSCKKRFTEYMRREVMRFFGVEMSTEAEDFALWQGRQRRLALR RFGTLKNESSDLPEGCNIDGSNGGAGAMAHHNMHCSGFNNAGQHQHHYHNHHHHHHHN HHNHHHATERPDILPIQDTEDDDALAQEGGANGGAVRRRGLRDHYHHPYYNIDFRAGD YVERKPSVMCMLVSGISFIVNTLNKRQIRFKRRRQWSRSFAPAHVQNTASTNADGSAS NNEIYEGALPEDEVFFDSPPGMDANSAASGSAGTPAAGANSGSTVRSAANVDRQMFIT AERNQQGWRTSNMMGHNGSGSIQQAVVLHGSSDQETSPQQQQQQQQMQQLQQQVPGMR ANRISSQILDGVLENSRRPVSQKIKLFCVNDLDDRTDHRPFFTYWINTVQIIVLFLSL LCYGIGPIGFGLEQRTGQVLVTSLSLQTVQHTEQRNIWIGPRNQDLVHMGAKFATCMR RDVKIIDVMMKTRRQERETACCIRNDDSGCVQSSQADCSVRGLFPTKSISTWKKWSPG ESGPGGRISGSVCGLDPKYCDAPASIAPYEWPDDITKWPICRKTNSFSQRFRFKDHTA EHMVCEVIGHPCCAGIYGECRITTREYCDFVNGYFHEEASLCSQISCLNNVCGMFPFV NVEVPDQFYRLFTSLCMHAGILHLMITVIFQHVFLADLERLIGPIRTAILYIGSGLAG NLTSAVLMPYKPEVGPLASLSGVIASLMVLLILSHWQHLHKPHVALFKLMVIGAILLA IGTLPWQLNFAGIFAGIFSGIFLTIALVPFVSVTKYRRKSKINLIWFCIIFHIFVYTT MLIIFYMFPTELTKLSFGEVLTNSFNTGVPGGNGATGSGGGGNVGTGSPGISTTDIMR TGISNSNNNNNNNNNNYNRQSFMHQQPQYHYHHQSDDIIINNVAAVATATLAPYIQ" polyA_site 6553 /gene="LOC106090289" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggcaaaagg acgatgagca aaacattaca cagcacaaac aaaagaacat ttattcaaaa 61 ttttaccata aatagttaac taataaataa caaatgtata taattgtaat aaataacaag 121 tctagcatta gaattcaata aaattaagat gattttgtga caaaaaccaa acgaaaaaac 181 caatgcaaaa attcaactcc tcaaaattgg atgtcgcgaa aactgttttc ccaactcgaa 241 cgtgaacgtg agcgagcagt agcagtagca gcagcaccag caccagcagt accagtgaga 301 aatcgatacg acgatggtat acacataaac aacattccaa aagaggaagc aaaaaataaa 361 ataacagtca aaaggattgt cattccacac acatacaaca aacaaaaatc tatagaagat 421 ttaattcgga tttaattttt aaaaaaatac aactcttaca tagccatata tatatataca 481 gatctatata tatacataca tacatacata cataatatat atacactcac acacacactg 541 caacacactc tcgtacatac atctaccttc tatatacata tatagtatat atcatagttt 601 aaacaacaaa aaaaaaagat cggaaaaaac gaaaaaaata aaccaaccaa atggaatcta 661 gaagttaaga atatttacga ccatacgaag catgctttcg ccaaaagcca atcaactctg 721 ctctaatatc ggtagctgtg aatcggatca tcaccacaat caaatgcatg catcgcatgg 781 ccatgcgcat gcccacaata atggccaaca acagcaacag atgcatcagc atcaacacat 841 gcatcagcat caacaccagc atcagcacca acagcagcag caccagcatc aacaggcgcc 901 accgatgcaa atgtcaatgc aaatgcagat gcaacagcca ccacaacaac agcagcagcc 961 acagcaacag catcaacatc aacaccctca ccaacatttg tcaacggtta taggtagacg 1021 tggcagcagc agcaatgtgc tgccacccca tatggcccaa atgtcaatca gcagcagtag 1081 cggcaatggt ggtgctgcct gcagtatggg catgggtggt ggtggtaacg gtggcagtgg 1141 cggcggggga aattccaccc tgaggcgcaa atcatccttg agctaccagc agcaattgat 1201 gggcaacaca ttgcaatgca gttcggacat aacaaccgat tgtggcaccg aaatctcccc 1261 cggccatttc agtccacatc ccaatgagct gtatttgcat catccacacc accaatcaca 1321 tgtgaaacta agtctgcaac ccatggagag atatgacgac tcattggcct gcagtttgcc 1381 accaccctcg ccggcgccca acagcgatcg ctttatcgat ggcaattgtg tggtctcgcc 1441 acccaatggc cacaacgatg cagacgatca tgtcatgtct catcaccagc aacaaacact 1501 gtcatcttcc acctcaaact cctcaatatc cacgggattg ggtagctgct cctcgtccat 1561 ggcggcggca gccggttgcg gacccatgaa tgcttcgctg caacgcgtca gcggccatca 1621 tgctctgaaa tatggccaaa atgccatgaa tgccatgcaa cgctccgcat cgcccaatac 1681 gagtcgttat cgcctcaacc ccgatcgcta tcgtgatatg agttcggctc aagttagttc 1741 gaattcaccc tcgaataatc caaactcagc tgccacagtg gtgccaaatt cggggcgtta 1801 tatcaacacg tcgagtcact tcctgaaaaa ctgtcccaca tccctggtgc cgacagacac 1861 atattcatat ttgtcttcga cggctcacac gccggtcaaa cgctatgttc ccaccccacc 1921 accaccccat gaactgtatg tggccgacca ccaccatcat ggctacaaga gccatagcca 1981 tggccaagcc accaccacac aaccagctca atataccggt cccacggcga ctgcgatcac 2041 aacgaaatgc ggaccccaat cctcctcttc acccagtaca ctgccatatc gcaatcgaaa 2101 tctcaaatgc tgttcatccg accaaatggc cgaactgcaa gcgccgtcgg ggatcactgc 2161 tatgacgcag caacaaagca acaaagacca ttacgcttca tcgccacgca tacggaataa 2221 taattacagt gggagtaatg gtggtggggg catgatgaca ggtaaaatca tctcgggcaa 2281 ggactcgcca gtggtgcacc tcagcgaggt gcagggcagt gtcatagccg ccaccggcca 2341 tccctacaat aaaacggtca gcatgatgac cacccagtgc agtgtggtca cccaaccgca 2401 tatggtggcc accatcactg cggtgggctg tgtcagttcg ccccagtcca gcctgaacat 2461 caccagcacc gtagcgcgtt ctcaactgcc aacatacaac actcgcaatg tcgccagcgg 2521 caacggcatg tgttccctga tcaatgatat gcaagaaatg tcttctataa gtgccacatc 2581 caatgccagc gagatgagtc tctcgactgg cgcctccggc tgtaatccca acaatgtcat 2641 gcgcaaagag gacggcagca gcagcagcac agcggccaac ggactggtgc tcagttcggg 2701 ggcgaactcg acctcggcca cttgcttgca ttgcaagact gtgcgacgta ccacgggtgt 2761 tcaccagacc acacagacaa ctggacccat tagcccagtg cctcagatga tgccgacacc 2821 gatgtcggca acggcggcca gcaacatgat aagcagctcc tccagttcca gcaccagcac 2881 tagcaatcaa aggtatgtgg agcaacagct agcggcggcg aacataacga tgaccttgac 2941 acccaccacc acggaagcga accacttgac acccctgacg ccgcctagca atggggtagc 3001 aacggcaatg cagccagcca ttgttaatcg catgctcaac aacaaaaaac aggaaatggt 3061 caacgaacaa atgtacactc agctgaaggc ggccagcaat caaattgtgc agcagcagca 3121 acagcaacag gcccaacaac aacaaatgct aatgagcgag cagcaaagtc atcatcatca 3181 actgcatcag caccagcagc agcaacagca acaacagctg cagcagctac aacagcaaca 3241 gttgcagcaa tcgccacagc aagcccagca accccagacc tcagctatgg aacagcatta 3301 tatggcgccc tcatcgctaa gaccctacag tcagcctcag gtggctcagg tggtcagcca 3361 gagtacacaa caaatgccag cgcagccaca gcaacaaacg cagcaaacgg ctgccagcac 3421 catgggccag cagcaacagc aaccgcagca acaacaacag cagcagcaac aacaacgcta 3481 ctcctgcaaa aaacgcttca ccgagtacat gcgacgtgag gtgatgcgct tctttggcgt 3541 cgaaatgtct acagaagctg aggacttcgc cttgtggcag ggccggcaac gccgtctggc 3601 cctgcgacgc tttggcaccc tgaaaaacga atcttccgat ttgcccgagg gctgcaacat 3661 agatggcagc aatggcggtg cgggtgccat ggctcatcat aacatgcact gctccggttt 3721 caacaatgcg ggtcaacatc agcatcacta tcacaatcat catcaccacc accaccacaa 3781 ccatcacaat caccatcatg ccacagagcg accagacata ctgcccatac aggacaccga 3841 ggacgatgac gcactggccc aggagggcgg tgccaatggg ggtgcggtgc gacgacgagg 3901 cctgcgtgat cattatcatc atccctatta caacatagac ttccgggccg gcgactatgt 3961 ggagcgcaaa ccctcggtga tgtgtatgct ggtttcaggc attagcttca tagtcaacac 4021 tctcaacaag cgtcagattc gtttcaagcg acgtcgccag tggtctcgca gctttgctcc 4081 cgctcatgtt cagaacacgg ccagcacgaa tgccgatggt tctgcctcga ataatgagat 4141 atacgaggga gccttgccgg aggatgaggt ctttttcgat tcgccacccg gcatggatgc 4201 caattcggcg gcatcgggtt cagcgggcac cccagcggct ggggccaaca gtggatcaac 4261 ggtgcgcagc gccgccaatg tcgatcgcca aatgttcata actgccgaac gtaatcaaca 4321 gggatggcgt accagcaata tgatgggcca caatggctca ggtagcatac agcaggctgt 4381 tgtcttgcat gggtcctcgg accaggaaac ctccccccaa cagcagcaac agcaacagca 4441 aatgcaacag cttcaacaac aggtgcccgg catgcgggcc aatcgcattt cttcgcagat 4501 attggatggc gttctggaga actcacgccg tcccgtatcc cagaagatca aacttttctg 4561 tgttaatgat ctcgacgata ggaccgatca tcggcccttc ttcacctatt ggatcaatac 4621 ggtgcaaata attgttttat ttctatcgtt gctgtgctat ggcatagggc ccataggctt 4681 tggtctggaa cagcgcaccg gccaggtgtt ggtcaccagt ctcagtctgc agacggtgca 4741 gcacaccgag cagaggaaca tctggatagg gccgcgcaat caggatctgg tgcatatggg 4801 ggccaaattt gccacttgta tgagacgtga tgtaaaaata atcgatgtga tgatgaagac 4861 aaggcgccag gaacgggaga cggcctgttg catacgaaac gatgattccg gttgtgtgca 4921 gagttcgcag gccgattgct cagtcagagg gctatttcca acgaaatcca tatcaacttg 4981 gaaaaaatgg tctcccggcg aatcgggtcc tggcggccgc atatccggtt cagtttgtgg 5041 cctagatccc aaatactgcg atgcccccgc atccatagcg ccctacgagt ggcccgatga 5101 catcaccaaa tggcccatat gccgcaaaac gaattcattc tcgcaacgtt ttcgttttaa 5161 ggatcacacc gccgagcata tggtgtgcga ggtcataggc catccctgct gtgcgggcat 5221 ctatggcgag tgtcgcatta caactcgcga atattgtgat tttgtaaatg gttatttcca 5281 tgaagaggcc tctctatgct cacagatctc ttgtttgaac aacgtatgcg gcatgttccc 5341 atttgtaaat gtggaagttc ccgatcagtt ctatcgcctc ttcacatcgc tgtgcatgca 5401 cgctggtatt ttgcatttaa tgataaccgt gatatttcaa catgtgttct tggccgattt 5461 ggagcgttta attggaccca tccgaacggc catcttgtat ataggttcgg gactagctgg 5521 caatttgaca agtgccgtct taatgcccta taaaccagag gtgggtcccc tcgcatcact 5581 ctcgggtgtt atagcatctc taatggtact gttaatacta tcacattggc aacacttaca 5641 caagccacat gtggctctat ttaagctgat ggtaataggt gccatactcc tcgctattgg 5701 aacgctgcca tggcaactga attttgccgg tatttttgcg ggtatattca gcggtatatt 5761 tctaacaata gctttagtac cattcgttag tgtcaccaaa tatcgacgta aatcaaagat 5821 aaatttaata tggttttgta ttatattcca catattcgtt tataccacaa tgttaataat 5881 tttctatatg ttccccactg aattaacaaa gctaagtttc ggagaggtgc tcacgaatag 5941 ttttaatact ggtgtaccag ggggcaatgg cgccacaggc agtggtggtg gcggtaatgt 6001 gggcaccggt tcgccgggca taagcacaac tgatattatg cgcacaggca tttcaaacag 6061 caacaataac aataataaca acaataataa ttataatcgt cagtcattta tgcatcaaca 6121 gccccaatat cattatcacc atcaatcgga tgatataata ataaataatg ttgccgctgt 6181 ggcgacggca accctggcac cctacataca gtaacgaacc ccctaatggt gaatttgaca 6241 aaaaacagac gcgcactttt ttcggtttat cttaagttac tatgtacttc ttaccaagta 6301 ataataatta ataataataa ttataatata aagaaaaaca acaacaaaaa caaacattaa 6361 aacaacaaaa caaatgacaa caacaacaaa gacaacacac gtataggtaa cgcgggtgtg 6421 acaattcacc atttctatca aacaacaaca acaacaagaa caaaaaaaaa accaaaacaa 6481 acaacaacag attatttgtc aaaagaatta agaataaata aaattattat aaataaatat 6541 aaaaaaaaca tta