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LOCUS XM_059367033 6066 bp mRNA linear INV 02-SEP-2023 protein Trf4-1-like (LOC106083232), mRNA. ACCESSION XM_059367033 VERSION XM_059367033.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq; corrected model; includes ab initio. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..6066 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6066 /gene="LOC106083232" /note="non-canonical poly(A) RNA polymerase protein Trf4-1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106083232" CDS 1491..4628 /gene="LOC106083232" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons" /codon_start=1 /transl_except=(pos:3534..3536,aa:OTHER) /transl_except=(pos:3537..3539,aa:OTHER) /product="LOW QUALITY PROTEIN: non-canonical poly(A) RNA polymerase protein Trf4-1-like" /protein_id="XP_059223016.1" /db_xref="GeneID:106083232" /translation="MDPFVGWFQEEQEGPALRTWCKIWETNAHEMTQLLEQQNQQLQL QQLQGGGNKFNNGANLTARERDSIQLLLHGMRNNHNNNNNNSSNNNSNNGNNSSGNNS SGNNSSNSSSDSSSNNTNNETSSTPATTPGGGGGGGDGGVSNTNSTNITGGGGGGGGG KMPSHERPNYYNLPRRKFGRIVDNKASTYNLNKHMDKLISKYKGCPWRVPDFNYGRGV LGLHQEIEQFYKYVLPTPTEHAIRLQVVHRIESVVRAIWPSAIVEIFGSFRTGLFLPT SDIDLVVLGLWDKMPLRTLETELIARGIAEPHSVRVLDKASVPIIKLTDRESQVKVDI SFNMQSGVQSAELIKKYKQEFPLLEKLVLVLKQFLLQRDLNEVFTGGISSYSLILMCI SFLQLHPRQIHPETDNLGVLLLEYFELYGRKFNYMKIGISVKNGGRYIPKEELQRDMV DGHRPSLLCIEDPLTPGNDIGRSSYGALQVKQAFEYAYLMLSQAVSPLNTWANDCNER SILGRIIRITDDVIDYREWIRDNYEHHLSARHSPVSAPLGVTVTGTPSVVGNTTKYMT MQLLPSTMLPAGALTGQQQQIIIPHLYHHTQQQQQQQQQQQQQQNHLVSSRYRRGSTS SGDDSEDSKECDADSTSPATVTNTTHIVGVGSGGVIGGTAGTMATSANIHTAARLDTX XIVAGLVQQQQQQQQMVAMPTGGTQFSVSAATTMLKQMQLQQQTTQPLTPQATHTTTF ISATTSPPSSSTATSPTLAVKSFHEIVASPIVSSTSDVNIVATTKSTNHLQQSQQQLQ QQQQQHAQQHKKNLLSPSPPRHHQPSHQHQSQPQSQHQQHQSQQQQQSQQQQQSSKQH YYRQQFYVPPPMQQQYQQQYATSSNPKYVAVTTATTTTAAGNSSSSGGSNNKPRYSNQ QQRLQQQQQVRQQRMQQNSSSSATTSASSTLPRNNSSSSTQTHGILTSASSTISIISI SSESSVCTISDSSSNKSGSESESRPSNSASSSSVSATNAKTETQQSRNYNKNNSNNGN GKKKTRKSNKSNKWK" ORIGIN 1 ctttgtaaca agcgtggttc gggtttttaa cagcgatagt ttcttaattt tcgtgtgaaa 61 aacgcagttg taattggata aactgcatta gaaaattgca aacatatgca atacgctcaa 121 aatggcgttt aaggcaaagc ctatgctgga caaattaacg tgaaaattgt gaatttccca 181 agcatccaat acaactcgag aattactaag gacagtgtgc aaaagtgata gaacagaatc 241 acatacacac acacataaac atacgcatgt agccagccac acaagaaaat agccagccac 301 atagaaaaaa cgagcaacac aacgccaccc gccgccacaa gtaatcgaat acctttggac 361 ggcaaaactg acactttatt gcagcattga catttgcttt ggctgtcaat tcaaagtgat 421 tgctttgcaa aagtcgtgga aaagtgctgc cgaaatttct gtggaagaaa aaaaaactta 481 agcaaaaaac aagtgtgtgt gaagtaaaca aaaggcaagg acaggcgaca tctacaacag 541 agagtgcatg aaagcaattt cattgaagaa tagaaaagaa aattacggag gaacgcaaaa 601 aaaaaaaaaa cgtaaggatt aatgcgattt tggttgctta agttcttgtg ctgtgtcgtc 661 tatgcagttg aataagtaat tagcaaatta tattgtactt gttgttattg tcaaaagcaa 721 gtgaattatt aataatgatt tttataatac ctcccaccct gttattgcct ttctcattcc 781 aatcatcaat gatgctctga ttgagcaaac atgttttaca aggattttgc aataatttgt 841 tcttttcttt aaaaactatg ccgttcactt aactcatcca tttgttttgc ttccccaaca 901 attatctcct agtcgttcgt tgcattagtc agtggattgc tttccccgat catctctgga 961 taacctggat tattaaaaga ctacaagtga ttgccttaaa caacaacaag tcatttcttc 1021 acattttgta ttccaccgaa acgactacgg agtgtctaaa aacaacagca aaaatttgtc 1081 catttttggt cagcaaattt ttttcaaaaa caaacacaca taaataaatg atagcgatag 1141 gcagcttgga gcagagaaga aagtgaaaaa agaataacta tgaaaaagtt gttgtagcat 1201 caatcatatc attggcattc catattttcg aataatttcc aatttaaaaa aattgcaacg 1261 actataacgt ggatagctca ctccagcact tgtcgctcat tgcccaaact ttctagtaaa 1321 actacagtgg agaaggaaaa actgttgatt ttcgaaagaa gaagaaccgc ctagaacccc 1381 cctataaaaa gttatcactt tgcaagtctt tggcataggt ggtgttgttg tgtggcgcgt 1441 caatttttga ctgtttttgg gggtaggtgg gctgagagaa aatattttga atggatcctt 1501 ttgttggttg gtttcaagag gaacaggagg gtccagcctt acgcacatgg tgtaaaattt 1561 gggaaaccaa tgcgcatgaa atgacccaat tgctggaaca gcaaaatcaa caattacaac 1621 tacaacaatt acaaggagga ggcaacaaat tcaataacgg tgccaattta acggcacgag 1681 agcgtgattc catacagcta ttgctgcatg gtatgcgtaa taatcacaac aacaataaca 1741 acaacagcag caacaacaat agtaataacg gcaacaattc cagcggcaac aattccagcg 1801 gcaacaattc gagcaacagt tccagcgatt caagcagcaa caataccaat aacgagacat 1861 catccacacc tgccacaaca cctggtggag gaggaggagg aggagacggc ggcgtaagta 1921 atacaaattc cacaaatata accggaggcg gcggcggcgg cggcggtggt aagatgccct 1981 cacatgaacg tcccaactat tataatctac cacgtaggaa atttggccgc attgtggata 2041 ataaggcgag tacatacaat ctaaacaagc acatggataa attgatatcg aaatacaagg 2101 gatgtccgtg gcgtgtgccg gactttaatt atggccgcgg tgttctggga ctgcatcagg 2161 agattgaaca gttttataag tatgtactgc ctacacccac cgaacatgcc atacgcctgc 2221 aggtggtaca tcgcatcgaa agtgtggtcc gtgcaatatg gccctcggcg atagttgaaa 2281 tatttggttc cttccgtact ggtctattcc tgcctacctc tgatattgat cttgtggtgt 2341 tgggtctctg ggataaaatg cctttgagga ctttagaaac agagctcatt gcccgcggta 2401 ttgccgagcc gcattcggtt cgtgtactcg ataaagcctc agtgcccatt attaagctaa 2461 cggatcgtga gtcccaggta aaagtggaca tctcgttcaa catgcaatcg ggtgtgcaat 2521 ccgctgaact cataaaaaaa tacaaacagg aattcccgct tttggagaaa ttggtgctag 2581 ttttgaagca gtttttgcta cagcgtgatc tcaatgaagt ttttaccggt ggtatttctt 2641 cctattcatt gatacttatg tgcattagtt tccttcaatt gcatccgcga caaatacatc 2701 ccgagactga taatttgggc gttctgctgc tggaatattt cgagctgtat gggcgtaaat 2761 ttaattacat gaaaataggt atctccgtta agaatggtgg tcgctatata cccaaagaag 2821 aattacaacg tgatatggtt gatggccata gaccttcgct gctgtgcatt gaggatcctc 2881 taacgccggg caatgatatt ggccggagtt cgtatggggc cttgcaagtt aaacaggcat 2941 tcgaatatgc ctatttgatg ctctcacagg ctgtgagtcc tttgaatact tgggccaatg 3001 actgcaatga acgttcaata ctggggcgta tcatacgcat aaccgatgat gtcatcgact 3061 atcgcgaatg gatacgcgat aattacgagc atcatctttc ggcccggcat tcacctgtat 3121 cagcgccctt gggcgtaacc gtaaccggaa cgccgagtgt ggtggggaat accaccaaat 3181 atatgacaat gcaactattg ccttccacca tgttgccagc tggtgcctta actggccaac 3241 agcaacaaat aataatacca cacctctatc atcatacgca gcagcagcaa caacaacaac 3301 aacagcagca gcagcagcag aatcatttgg taagcagtcg ctatcgtcga ggcagcactt 3361 cttccggtga tgattcggag gatagcaaag aatgtgatgc tgattccacg tcaccggcga 3421 cggtgacaaa taccacccat atcgtgggag ttggtagtgg tggcgttatt gggggaacag 3481 ctggtacaat ggctacatcc gcgaatattc atacggctgc ccggttggat acatgatgaa 3541 tagttgccgg tttggtgcag caacagcaac aacagcaaca aatggtagca atgccgaccg 3601 gtggaaccca gttctcagtg tcagcggcga cgaccatgct gaaacagatg cagttgcagc 3661 agcaaaccac gcagcctcta acgccacaag ccacacacac aactactttt atatccgcca 3721 caacatcgcc cccctcatcg tcaaccgcca catcacccac attagctgtt aagtcgtttc 3781 atgagattgt tgcatctccg attgttagtt caacatcaga tgtaaatatt gtcgcaacca 3841 caaagtctac aaatcacctg caacagtcac aacaacagct gcagcagcaa caacaacagc 3901 acgcgcagca acataagaaa aatctcctat cgccttcgcc cccgcgacat catcagccat 3961 cgcatcaaca ccagtcacaa ccacaatccc aacatcaaca gcatcagtcg caacagcagc 4021 agcagtcgca acagcaacag caatcatcca agcaacatta ttatcgtcag caattttatg 4081 taccacctcc aatgcaacaa cagtatcaac aacaatacgc cacttcttca aatccaaaat 4141 atgttgctgt caccaccgcc acaacaacaa ccgctgctgg caacagcagc agtagcggag 4201 gcagcaacaa taaaccccgc tattcaaatc aacagcaacg tttacagcaa caacaacaag 4261 tccgacaaca acgtatgcaa cagaattctt catcttccgc caccacatcg gcttcgtcga 4321 cattgccacg caacaattcc agttcgtcaa cacaaacaca tggaatttta acatcggcat 4381 catcgaccat ctcgattatt tccatttcat cggaatcatc agtgtgtacc atttcggatt 4441 cttcttccaa caaatcaggt tccgagtcgg agtcacgtcc atcaaattcg gcatcgtcgt 4501 cgtccgtgtc ggcgacgaat gctaagacag aaacccaaca atctcgtaac tataacaaaa 4561 acaacagcaa caatggtaac ggcaagaaga agacgagaaa gtccaacaaa tcgaataagt 4621 ggaagtaatt aaaattttgc cacccacaat accacccgaa aatagcaacc agagattata 4681 attaggatga tctttttaaa agaggtatct ttaaactaag cgaacacaaa tacagataag 4741 aaaacaaagc atttagaaaa caacaaaaaa aactaataca aaaacagcag aattgtacga 4801 gaaaccgaaa acatcaccca ctatctctta actctcttta tatactatcc atttcgccct 4861 aaatctataa cggagtgtaa acgaatctag catacaacta actattgata gtaattctct 4921 cctctcccta gtaaaataag caatatcgtt attagcttca cttgaaaaca aaaaaaaaaa 4981 caaaaatcaa aaactcctaa aacttaaaaa gtaaatccaa tttccctctt ttccttacgc 5041 cactagccca caccctctca ataacaattg aagcaattat actcatagtc cattatgctc 5101 ttagtaaaag tctgtcaatc atcaaactct gtcgctcggt aaaacaaaat actacaacaa 5161 caacaaatca ttgatagatg ctaaaactaa ttacacctca acacacccac agacacatgt 5221 gcatatatat ccaacatctt aaaacatacc atattgacta agcatgcaag ccagaacagt 5281 aagaagaata agcaacaacg aaattgtagg cgaaaacaaa aacataaccg aaatagctct 5341 catttcctta atatcatcat tagtatcgtc gtttagtaaa gctaatggaa taaaaacaca 5401 acaacaacaa ctacatacta cttctacaac tagaaaagaa aagcatacaa aataaatagg 5461 taacgaaaca taacacatac ataaacatcg tcgtaatagc tgtcgtcgta ggtatacaat 5521 tacagaaaac gtaacgtaac gcatggccat gtaacgtaaa tgtacggtat ttgcaatgta 5581 actttgtgtg agcacttata aacaaaaaga aatttatata ctttccatac atccatcccc 5641 ctaccacttc cttatgtact ttgcaaacat atccctcacc gttcttcata ggcaacaatt 5701 gaccgtttaa tgtgtgtgtt ttccttatag ctttaaaaat tcttagtttt gatactaatt 5761 aaggcggcaa tattattttt cgattttaaa agttgagtta atgttaagtt tgtcgagctc 5821 tttggtttgg attttttttt tctcattgca aaattgtctt tgatttacta ggaaaaataa 5881 agaaaatgaa attttgcaaa aacaatttgg gtgaatgttg taaggcaaag atatttttct 5941 gcctcagaac ttttttttaa catttaaaaa atgtttttcg taatgcaatc aaacatttta 6001 ctatatatgc tttttataaa attaattttt tcataaaaat aaattataaa aatatatttt 6061 ttatga