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LOCUS XM_059367029 6860 bp mRNA linear INV 02-SEP-2023 (LOC106082136), transcript variant X6, mRNA. ACCESSION XM_059367029 VERSION XM_059367029.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6860 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6860 /gene="LOC106082136" /note="high mobility group protein DSP1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106082136" CDS 705..2045 /gene="LOC106082136" /codon_start=1 /product="high mobility group protein DSP1 isoform X3" /protein_id="XP_059223012.1" /db_xref="GeneID:106082136" /translation="MEHFHQIQQTLQHYQQQLVAQQQQQAAAAAAAVQQQQQQLQQQQ QQQQHQQQVVVQQNQQQAHQNNANTTSGVGTQQLFTYKMASSFPNPATTMAQVVATSN AAGTPAYDYRLNMAQAAAAAAVPGSQWWYSAANQGQIDANTAAQLQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQHQQQQQQLQQQQQQQAQQQQQQNANNIIRAAGGGKPD AKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMA EKDKARYELEMQNYVPPKGTVVGRGKKRKQMKDPNAPKRSLSAFFWFCNEKRNEVKAV NPEYGVGDIAKELGRKWADVEPEVKQKYELMAEKDKARYEREMTEYKTSGTIAMSAPS MQAQQQAAQKAALLAVAAAQQAQQQQQQQQQQQQTVHHDDHDDDDGEGDDDENQ" polyA_site 6860 /gene="LOC106082136" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgggtgttgt acagtaaagt cagagcattc agttgtctat taaattagaa ggcaactttt 61 ggagagggct tatgttgacg tttattccaa ttgcctcccc ccccctcccc ccaatctcta 121 tcgttcggat atttgtcata tgtgtttttt ttttaaatac gcgaaagaat agaagtaatg 181 aaatccatgt aatgatgatc taaatgccaa gtgtgtgcaa gaaaagttga aaaatattgt 241 ggaaagagag tagctagact ctttaatgaa ttcatcagtc gctatgacaa tgattatttg 301 actgatcaag tgttttttat tttggtagaa ctaccaatga taaagagaaa acaagtttgt 361 aagtgacaac gttgaaaaaa agcgcgccta aatttttctt ttgaaaacaa caacagcaat 421 taaagtgaat ttaagaaaga ccaaatagaa accaagtgga tataaaacag tgtatagttg 481 ccccacaaga aagtgttttc gatatttgaa tatcgataaa tctattaaga cagaaaccgc 541 caataaggaa gtaattggct tattagcagc agcagccaac taccagcaga acacccacct 601 aacaccaaca acaactgtga atatagaagg cagcaaattg agtatcatcg tatatgcggg 661 aataaaggaa aaaagcagac atcttttaga aatacacagc aaatatggag cattttcatc 721 aaatacagca aactcttcaa cattatcagc aacaattggt tgcccagcaa caacaacagg 781 ccgctgccgc agccgctgct gtccagcaac aacaacaaca attgcaacag cagcagcagc 841 aacagcagca ccaacaacaa gttgtcgtcc aacagaatca acagcaagcc catcaaaata 901 atgccaacac cacttctggc gttggcaccc aacagctttt cacatacaaa atggctagta 961 gttttcccaa tccagccacg acaatggccc aagttgtcgc cacctcaaat gcagccggta 1021 cacctgccta cgattatcgc ttaaatatgg cccaggccgc agccgccgct gccgtgcccg 1081 gttcacaatg gtggtattca gcagccaatc aaggacaaat cgatgccaat acagccgccc 1141 aattgcaaca gcaacaacag caacagcagc agcaacagca gcaacaacag cagcagcaac 1201 agcagcaaca acagcaacag cagcagcaac agcagcaaca acaacagcat cagcagcaac 1261 aacagcaatt gcagcagcag caacaacagc aggcgcaaca gcaacaacaa cagaatgcga 1321 ataatataat acgggctgct ggaggaggta aaccggatgc taaaccacgt ggccgtatga 1381 cagcctatgc ctattttgta cagacatgcc gcgaagaaca caagaaaaaa catcccgatg 1441 agacagttat atttgcggaa ttctccagaa agtgtgctga aagatggaag acaatggttg 1501 acaaggaaaa gaaacgattc cacgaaatgg ctgaaaaaga taaagctcgt tatgaactgg 1561 aaatgcaaaa ttatgtgcct cctaagggta cagttgtggg tcgaggcaaa aagaggaaac 1621 aaatgaagga tcctaacgcg ccgaaacgat cattatctgc cttcttctgg ttctgcaatg 1681 agaaacgtaa tgaagtgaaa gctgtaaatc ctgaatatgg tgtcggcgat attgccaaag 1741 agctaggacg caaatgggct gatgttgaac ccgaggttaa acagaaatat gaactaatgg 1801 ctgaaaagga caaggcacga tatgaaaggg aaatgacgga gtacaagaca agtgggacaa 1861 ttgctatgtc tgcaccttcc atgcaagccc aacagcaagc ggcacaaaaa gctgccttac 1921 tagcagtagc tgccgcacaa caggcccagc aacagcagca gcagcagcaa caacaacaac 1981 agaccgtcca tcatgatgac catgatgatg acgatgggga gggtgatgat gatgaaaatc 2041 agtagattta ataataatat tatgcccaaa tgttgcttat gaaatataat accaaccaca 2101 accaatcaac caaccaacca acaacacata atattcaatc ccctagaatc acaacaacaa 2161 caacaattcc aactacttca aaaatcaaaa caatcaaaca ccaatccggc acgcgatctt 2221 tcttctcctt ctatgaattt tatttctttt ttaacaataa tttaattttt gtttttgttc 2281 ttttttccct tctcaagagt gacatctaga attaccactt tttctctcac ttttcaacaa 2341 aagcagcaac aaagcaaact tacacagggc atcgaacaga acagaattct tgatgctgaa 2401 attttatgag atgtattgtg atagaatgaa tatttgaagg taactttttt aaaacaaaaa 2461 aaaaaaaaat aataattaat ataagtaagc ccttaaccta tgatgaagat ttcctgaaaa 2521 tattcatgaa atatgaatta cttgttatat ttagcagcaa cttttgtcat atatccaaaa 2581 tcttaactac ctctccttca gcattggaat tcaaatatga cgccttagcc tatgctcgtt 2641 gttcgttgtc ctgtggttta gtgctcttaa ttttgtttta acaacttctc aaggaccatt 2701 tgaccattat tcaaacattt gcataacaat ttatattctc ttttaaggaa atcagtttca 2761 ttttttacaa tacgctttaa tttttgtaaa actcatcaag aaagaaaaat tactgtgtaa 2821 tttttattta acgagaaaaa atatatatac atacatcgtt ttttttaatc atgtatttgt 2881 tttctgcaaa ttacataagt aactgagtta taaaagttta tacgacagca gaaaacttct 2941 cttaaaaaaa aaagaaaacc ctaaaaattc cttttaggtt atttcaaaat catactctcc 3001 gattcaacgg catatacaaa tatacatact atatataata tatatttttt tgttttaatt 3061 tgaactataa gataaaaaga aaaaaaacat aactaatata aatattgtaa agtgaacttt 3121 tttttatata gaaaacaaca acaacaacaa caacaatatt aaaacgaaga attatggcgt 3181 tttttattta ctatttaaaa tcattgatag taatttaggt acagttttct tcagagattt 3241 ttcacatttt cttatttaac acccaaacac attcgccatt aaaattattt gtttttattt 3301 tcacttcttt gtgtttatag tatttttttg tttgtttaac atttacaaag tgtaaaatat 3361 tcagcaccaa caaccacaca taacaagaac aacacatttt tgcaaatatc atccctttct 3421 ctcatacaca ttcatccacc cactctctat ctctttatct cgctccctat ctttttttgt 3481 atgggacaaa agaaggccga aattaaaaaa aatattttaa cacaataaaa tccatcataa 3541 gtacttttct tattattata ccgtatatat aataatgaac aaaaatataa taaactcaaa 3601 aatttagaaa ataaagacat aagatacatt tttagaaata taaattacaa aaaatatgat 3661 ctttaatttc gtttttctaa ataaattgtg tattgagatt tagagaaata aatttaaaat 3721 aggacttgta tgtgtcttcc cactttcact gcattgtaaa atgatggcat aagatttgga 3781 atttttgtgt taatttctct ttgctaccat atgatgggtc gcataggcta gtatgcattg 3841 tgccatttca gggatgataa ttttggtact ttttttgatg gttttcaaac atcaaaagta 3901 cccgcgcgtc attggtattt ttttcgtgat tagccatttt taattatttt cgaggccgca 3961 agaaaggaaa gagttttcat tttataattg aacgttacta aagtttttcc tgaatataat 4021 tgatgatata aacctaaaaa tgccaacaga gcaaaaactc caatgatgag ggatattacc 4081 ttatattaat agattacctt atattaatat atgtatatta cccaatgaac cttatacaaa 4141 attagagaat tggttggacc tcatggaaat cgaatgaatg aacccttcgt tagcacacaa 4201 aggcaaattc tagtaaatat caatgagtgc agtcccattc cagttttaaa ctcaatgata 4261 aggggcctcc tttttatagc cgggtccgaa cggcgtgccg cagtgctaca tctctctgga 4321 gagaaatttt acatggcata gtacctcaca aatgttgcca gcattaggag gggaaaacca 4381 cagctgaaaa attttttttg atggtctcgc caggatttga accctgccgt tcagcgtcat 4441 atgcggacat gctaacctct gagctacaat tcaagtatat ggcggttata tcgaaatgtg 4501 agcttgtgta gaaaatactt agatcatgcg tatcgaaatc gggatccctg ggaacggggt 4561 tgaaagattt tttttttatt taaaagtaat ctaatggaaa aatacgctct atgtaagagg 4621 taaaatttcc taattttcgc tctaaatggg agctatctca aaatatagtt cgacttcaga 4681 ctcggaataa caagggcatt tcttatcagt gaactgaaaa caaagaactg aaggaatttt 4741 cgtggccaaa gtacacttgc attttatacg agcgaaatgg cctgcgcaca gtactttttt 4801 tttgtattca tcactgttat gtctttgaac aaattttgtt aagatattag aggaagttac 4861 ggccataaac agcaaaaaag tacaactttt ctattgagcc actaagagct atattttgta 4921 ggttttcata aaagttcctt tttaaattgg tttcaatatc acctcgttca cctgttccac 4981 ttcaatatca atttgacact tttttcgaag gtctaatttg tgagccattt ttctattgag 5041 ccatcgagag gagccatatt gaaaaaaaac ctccagcaga attttacaag ctttcaatta 5101 tcaaactcaa aaatttgctc gctctcacgc tttcgcgctc ttctgctggc aaataaagta 5161 ttcgaatgat atccagtcca aatttgcata attaataacc gttttgcata ttttagcatg 5221 tctgcctatg acacagaacg cctgtgtgtt cgatcaattc agaagtactc gtatatgtgt 5281 gttcgcgcac tcaaaaattt gtgcacacat tgttaatgaa agtcagtgtt gctagtattg 5341 gggatttctc cccaaatcgg ggatttattt tcgataatgg ggacgaaatt gttgacatgg 5401 gaatttgata gctagcgcag gttcacaaaa gaagcttagg tcacttgccc agctgataga 5461 atttttcaat tccagagttt tagacaaatc tcacaagaac gtcaaatgct ttgtttggag 5521 tttaaacttt ttttcataag ttgttccctt ttgcacattg taatcataag tcttttgatc 5581 ttgtggctgc tacacatgat aatgcaaata aaaactagaa tatccattag gaagtgtccc 5641 acatttttgg atagcctagt gggaatttgc gttgatttcg ttgttgttgt gaaagtgatt 5701 taagctttta aattcaactc gatgcaaaaa ttggctatga ttttgataaa catttacaca 5761 ggcgttcaca aaacttgatg tgtatatgaa atagacttat ttaccagatt tcctttacag 5821 aactgtcaaa taatcatata ttaaggcttc attacttact tacttacttt aattggctat 5881 gacagaatat ttgttccaat agccggacgt agaatatcgt tccatgcgcc tcaatcttct 5941 gagattctaa aatctctgac accaagtttc gtggtgtctc ccaccacttg atctttccat 6001 cgagcttttg gtcttcccgt tttgccttca aaagacttct tttccggagc ttcttcatcc 6061 attctgacaa catgacctag ccaaagcagc cgttgtattt tgaaacgcgt gactaggcta 6121 tcgtcgtcat acagctcgtg gttaatacgt cgcctatatt ctcaattatc gcaaactggt 6181 ccatatattt tacgaagaat ctttctatca aatactccaa gcactgcctc atctgctttc 6241 acaagtaccc atgtttcaga accatataac aacacgggta gtatcagtgt cttcattaaa 6301 aaaacataaa tcggaagtat ttacatcaag ttaaaccccg tttacactgc taattaaatc 6361 tggatttaag gctctcgtct gattttataa agggaaaaca gatcatcgag ccattaaatc 6421 cggatttaaa cagcagtgtt aacggggttt tacttgtttt ttttattggt atttaatatc 6481 tgttatcgca tgatatcgat aactatccaa gacaactttg cactgaaatt gtatacagaa 6541 aatcgaactt gcactggatt ggactaaaat aagacacttg ttgtgttcta gtttaatcca 6601 aacctgttct gttcttactt tcctgtaaat ttttactgga aaagtaagcg aacagaccta 6661 atatcagtgt tttgagcatt cagctactaa gtatttgtaa aaaggtacgc acttcaataa 6721 agaaatggaa atttttatta caaatttgcc cgttggcaac gcaacttgag ttgggttgct 6781 acccctaagt ccctttttct tagtacaata cagtgcaaag gatatgttat cgaatgttat 6841 tgcatgccat agataactat