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LOCUS XM_059367028 7003 bp mRNA linear INV 02-SEP-2023 (LOC106082136), transcript variant X5, mRNA. ACCESSION XM_059367028 VERSION XM_059367028.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7003 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7003 /gene="LOC106082136" /note="high mobility group protein DSP1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106082136" CDS 707..2188 /gene="LOC106082136" /codon_start=1 /product="high mobility group protein DSP1 isoform X2" /protein_id="XP_059223011.1" /db_xref="GeneID:106082136" /translation="MEHFHQIQQQLVAQQQQQAAAAAAAVQQQQQQLQQQQQQQQHQQ QVVVQQNQQQAHQNNANTTSGVGTQQLFTYKMASSFPNPATTMAQVVATSNAAGTPAY DYRLNMAQAAAAAAVPGSQWWYSAANQGQIDANTAAQLQQQQQQQQQQQQQQQQQQQQ QQQQQQQQQQQQQQHQQQQQQLQQQQQQQAQQQQQQNAANVIDSNYLAKSGATSSSTI ISNVIDGIAEKDNNVHKGGVKPPQDDKPLSQGHINNIIRAAGGGKPDAKPRGRMTAYA YFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDKARYELEM QNYVPPKGTVVGRGKKRKQMKDPNAPKRSLSAFFWFCNEKRNEVKAVNPEYGVGDIAK ELGRKWADVEPEVKQKYELMAEKDKARYEREMTEYKTSGTIAMSAPSMQAQQQAAQKA ALLAVAAAQQAQQQQQQQQQQQQTVHHDDHDDDDGEGDDDENQ" polyA_site 7003 /gene="LOC106082136" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attgggtgtt gtacagtaaa gtcagagcat tcagttgtct attaaattag aaggcaactt 61 ttggagaggg cttatgttga cgtttattcc aattgcctcc ccccccctcc ccccaatctc 121 tatcgttcgg atatttgtca tatgtgtttt ttttttaaat acgcgaaaga atagaagtaa 181 tgaaatccat gtaatgatga tctaaatgcc aagtgtgtgc aagaaaagtt gaaaaatatt 241 gtggaaagag agtagctaga ctctttaatg aattcatcag tcgctatgac aatgattatt 301 tgactgatca agtgtttttt attttggtag aactaccaat gataaagaga aaacaagttt 361 gtaagtgaca acgttgaaaa aaagcgcgcc taaatttttc ttttgaaaac aacaacagca 421 attaaagtga atttaagaaa gaccaaatag aaaccaagtg gatataaaac agtgtatagt 481 tgccccacaa gaaagtgttt tcgatatttg aatatcgata aatctattaa gacagaaacc 541 gccaataagg aagtaattgg cttattagca gcagcagcca actaccagca gaacacccac 601 ctaacaccaa caacaactgt gaatatagaa ggcagcaaat tgagtatcat cgtatatgcg 661 ggaataaagg aaaaaagcag acatctttta gaaatacaca gcaaatatgg agcattttca 721 tcaaatacag caacaattgg ttgcccagca acaacaacag gccgctgccg cagccgctgc 781 tgtccagcaa caacaacaac aattgcaaca gcagcagcag caacagcagc accaacaaca 841 agttgtcgtc caacagaatc aacagcaagc ccatcaaaat aatgccaaca ccacttctgg 901 cgttggcacc caacagcttt tcacatacaa aatggctagt agttttccca atccagccac 961 gacaatggcc caagttgtcg ccacctcaaa tgcagccggt acacctgcct acgattatcg 1021 cttaaatatg gcccaggccg cagccgccgc tgccgtgccc ggttcacaat ggtggtattc 1081 agcagccaat caaggacaaa tcgatgccaa tacagccgcc caattgcaac agcaacaaca 1141 gcaacagcag cagcaacagc agcaacaaca gcagcagcaa cagcagcaac aacagcaaca 1201 gcagcagcaa cagcagcaac aacaacagca tcagcagcaa caacagcaat tgcagcagca 1261 gcaacaacag caggcgcaac agcaacaaca acagaatgcg gcaaatgtaa tcgattcaaa 1321 ttacttggca aagagtggag caacatcgtc ttctacgatc atttcaaatg ttattgatgg 1381 cattgcggaa aaggacaata atgttcataa gggcggtgta aagccaccac aggatgataa 1441 gcctctatcc caaggccata ttaataatat aatacgggct gctggaggag gtaaaccgga 1501 tgctaaacca cgtggccgta tgacagccta tgcctatttt gtacagacat gccgcgaaga 1561 acacaagaaa aaacatcccg atgagacagt tatatttgcg gaattctcca gaaagtgtgc 1621 tgaaagatgg aagacaatgg ttgacaagga aaagaaacga ttccacgaaa tggctgaaaa 1681 agataaagct cgttatgaac tggaaatgca aaattatgtg cctcctaagg gtacagttgt 1741 gggtcgaggc aaaaagagga aacaaatgaa ggatcctaac gcgccgaaac gatcattatc 1801 tgccttcttc tggttctgca atgagaaacg taatgaagtg aaagctgtaa atcctgaata 1861 tggtgtcggc gatattgcca aagagctagg acgcaaatgg gctgatgttg aacccgaggt 1921 taaacagaaa tatgaactaa tggctgaaaa ggacaaggca cgatatgaaa gggaaatgac 1981 ggagtacaag acaagtggga caattgctat gtctgcacct tccatgcaag cccaacagca 2041 agcggcacaa aaagctgcct tactagcagt agctgccgca caacaggccc agcaacagca 2101 gcagcagcag caacaacaac aacagaccgt ccatcatgat gaccatgatg atgacgatgg 2161 ggagggtgat gatgatgaaa atcagtagat ttaataataa tattatgccc aaatgttgct 2221 tatgaaatat aataccaacc acaaccaatc aaccaaccaa ccaacaacac ataatattca 2281 atcccctaga atcacaacaa caacaacaat tccaactact tcaaaaatca aaacaatcaa 2341 acaccaatcc ggcacgcgat ctttcttctc cttctatgaa ttttatttct tttttaacaa 2401 taatttaatt tttgtttttg ttcttttttc ccttctcaag agtgacatct agaattacca 2461 ctttttctct cacttttcaa caaaagcagc aacaaagcaa acttacacag ggcatcgaac 2521 agaacagaat tcttgatgct gaaattttat gagatgtatt gtgatagaat gaatatttga 2581 aggtaacttt tttaaaacaa aaaaaaaaaa aataataatt aatataagta agcccttaac 2641 ctatgatgaa gatttcctga aaatattcat gaaatatgaa ttacttgtta tatttagcag 2701 caacttttgt catatatcca aaatcttaac tacctctcct tcagcattgg aattcaaata 2761 tgacgcctta gcctatgctc gttgttcgtt gtcctgtggt ttagtgctct taattttgtt 2821 ttaacaactt ctcaaggacc atttgaccat tattcaaaca tttgcataac aatttatatt 2881 ctcttttaag gaaatcagtt tcatttttta caatacgctt taatttttgt aaaactcatc 2941 aagaaagaaa aattactgtg taatttttat ttaacgagaa aaaatatata tacatacatc 3001 gtttttttta atcatgtatt tgttttctgc aaattacata agtaactgag ttataaaagt 3061 ttatacgaca gcagaaaact tctcttaaaa aaaaaagaaa accctaaaaa ttccttttag 3121 gttatttcaa aatcatactc tccgattcaa cggcatatac aaatatacat actatatata 3181 atatatattt ttttgtttta atttgaacta taagataaaa agaaaaaaaa cataactaat 3241 ataaatattg taaagtgaac ttttttttat atagaaaaca acaacaacaa caacaacaat 3301 attaaaacga agaattatgg cgttttttat ttactattta aaatcattga tagtaattta 3361 ggtacagttt tcttcagaga tttttcacat tttcttattt aacacccaaa cacattcgcc 3421 attaaaatta tttgttttta ttttcacttc tttgtgttta tagtattttt ttgtttgttt 3481 aacatttaca aagtgtaaaa tattcagcac caacaaccac acataacaag aacaacacat 3541 ttttgcaaat atcatccctt tctctcatac acattcatcc acccactctc tatctcttta 3601 tctcgctccc tatctttttt tgtatgggac aaaagaaggc cgaaattaaa aaaaatattt 3661 taacacaata aaatccatca taagtacttt tcttattatt ataccgtata tataataatg 3721 aacaaaaata taataaactc aaaaatttag aaaataaaga cataagatac atttttagaa 3781 atataaatta caaaaaatat gatctttaat ttcgtttttc taaataaatt gtgtattgag 3841 atttagagaa ataaatttaa aataggactt gtatgtgtct tcccactttc actgcattgt 3901 aaaatgatgg cataagattt ggaatttttg tgttaatttc tctttgctac catatgatgg 3961 gtcgcatagg ctagtatgca ttgtgccatt tcagggatga taattttggt actttttttg 4021 atggttttca aacatcaaaa gtacccgcgc gtcattggta tttttttcgt gattagccat 4081 ttttaattat tttcgaggcc gcaagaaagg aaagagtttt cattttataa ttgaacgtta 4141 ctaaagtttt tcctgaatat aattgatgat ataaacctaa aaatgccaac agagcaaaaa 4201 ctccaatgat gagggatatt accttatatt aatagattac cttatattaa tatatgtata 4261 ttacccaatg aaccttatac aaaattagag aattggttgg acctcatgga aatcgaatga 4321 atgaaccctt cgttagcaca caaaggcaaa ttctagtaaa tatcaatgag tgcagtccca 4381 ttccagtttt aaactcaatg ataaggggcc tcctttttat agccgggtcc gaacggcgtg 4441 ccgcagtgct acatctctct ggagagaaat tttacatggc atagtacctc acaaatgttg 4501 ccagcattag gaggggaaaa ccacagctga aaaatttttt ttgatggtct cgccaggatt 4561 tgaaccctgc cgttcagcgt catatgcgga catgctaacc tctgagctac aattcaagta 4621 tatggcggtt atatcgaaat gtgagcttgt gtagaaaata cttagatcat gcgtatcgaa 4681 atcgggatcc ctgggaacgg ggttgaaaga tttttttttt atttaaaagt aatctaatgg 4741 aaaaatacgc tctatgtaag aggtaaaatt tcctaatttt cgctctaaat gggagctatc 4801 tcaaaatata gttcgacttc agactcggaa taacaagggc atttcttatc agtgaactga 4861 aaacaaagaa ctgaaggaat tttcgtggcc aaagtacact tgcattttat acgagcgaaa 4921 tggcctgcgc acagtacttt ttttttgtat tcatcactgt tatgtctttg aacaaatttt 4981 gttaagatat tagaggaagt tacggccata aacagcaaaa aagtacaact tttctattga 5041 gccactaaga gctatatttt gtaggttttc ataaaagttc ctttttaaat tggtttcaat 5101 atcacctcgt tcacctgttc cacttcaata tcaatttgac acttttttcg aaggtctaat 5161 ttgtgagcca tttttctatt gagccatcga gaggagccat attgaaaaaa aacctccagc 5221 agaattttac aagctttcaa ttatcaaact caaaaatttg ctcgctctca cgctttcgcg 5281 ctcttctgct ggcaaataaa gtattcgaat gatatccagt ccaaatttgc ataattaata 5341 accgttttgc atattttagc atgtctgcct atgacacaga acgcctgtgt gttcgatcaa 5401 ttcagaagta ctcgtatatg tgtgttcgcg cactcaaaaa tttgtgcaca cattgttaat 5461 gaaagtcagt gttgctagta ttggggattt ctccccaaat cggggattta ttttcgataa 5521 tggggacgaa attgttgaca tgggaatttg atagctagcg caggttcaca aaagaagctt 5581 aggtcacttg cccagctgat agaatttttc aattccagag ttttagacaa atctcacaag 5641 aacgtcaaat gctttgtttg gagtttaaac tttttttcat aagttgttcc cttttgcaca 5701 ttgtaatcat aagtcttttg atcttgtggc tgctacacat gataatgcaa ataaaaacta 5761 gaatatccat taggaagtgt cccacatttt tggatagcct agtgggaatt tgcgttgatt 5821 tcgttgttgt tgtgaaagtg atttaagctt ttaaattcaa ctcgatgcaa aaattggcta 5881 tgattttgat aaacatttac acaggcgttc acaaaacttg atgtgtatat gaaatagact 5941 tatttaccag atttccttta cagaactgtc aaataatcat atattaaggc ttcattactt 6001 acttacttac tttaattggc tatgacagaa tatttgttcc aatagccgga cgtagaatat 6061 cgttccatgc gcctcaatct tctgagattc taaaatctct gacaccaagt ttcgtggtgt 6121 ctcccaccac ttgatctttc catcgagctt ttggtcttcc cgttttgcct tcaaaagact 6181 tcttttccgg agcttcttca tccattctga caacatgacc tagccaaagc agccgttgta 6241 ttttgaaacg cgtgactagg ctatcgtcgt catacagctc gtggttaata cgtcgcctat 6301 attctcaatt atcgcaaact ggtccatata ttttacgaag aatctttcta tcaaatactc 6361 caagcactgc ctcatctgct ttcacaagta cccatgtttc agaaccatat aacaacacgg 6421 gtagtatcag tgtcttcatt aaaaaaacat aaatcggaag tatttacatc aagttaaacc 6481 ccgtttacac tgctaattaa atctggattt aaggctctcg tctgatttta taaagggaaa 6541 acagatcatc gagccattaa atccggattt aaacagcagt gttaacgggg ttttacttgt 6601 tttttttatt ggtatttaat atctgttatc gcatgatatc gataactatc caagacaact 6661 ttgcactgaa attgtataca gaaaatcgaa cttgcactgg attggactaa aataagacac 6721 ttgttgtgtt ctagtttaat ccaaacctgt tctgttctta ctttcctgta aatttttact 6781 ggaaaagtaa gcgaacagac ctaatatcag tgttttgagc attcagctac taagtatttg 6841 taaaaaggta cgcacttcaa taaagaaatg gaaattttta ttacaaattt gcccgttggc 6901 aacgcaactt gagttgggtt gctaccccta agtccctttt tcttagtaca atacagtgca 6961 aaggatatgt tatcgaatgt tattgcatgc catagataac tat