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LOCUS XM_059367026 6811 bp mRNA linear INV 02-SEP-2023 (LOC106082136), transcript variant X3, mRNA. ACCESSION XM_059367026 VERSION XM_059367026.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6811 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6811 /gene="LOC106082136" /note="high mobility group protein DSP1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106082136" CDS 494..1996 /gene="LOC106082136" /codon_start=1 /product="high mobility group protein DSP1 isoform X1" /protein_id="XP_059223009.1" /db_xref="GeneID:106082136" /translation="MEHFHQIQQTLQHYQQQLVAQQQQQAAAAAAAVQQQQQQLQQQQ QQQQHQQQVVVQQNQQQAHQNNANTTSGVGTQQLFTYKMASSFPNPATTMAQVVATSN AAGTPAYDYRLNMAQAAAAAAVPGSQWWYSAANQGQIDANTAAQLQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQHQQQQQQLQQQQQQQAQQQQQQNAANVIDSNYLAKSG ATSSSTIISNVIDGIAEKDNNVHKGGVKPPQDDKPLSQGHINNIIRAAGGGKPDAKPR GRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK ARYELEMQNYVPPKGTVVGRGKKRKQMKDPNAPKRSLSAFFWFCNEKRNEVKAVNPEY GVGDIAKELGRKWADVEPEVKQKYELMAEKDKARYEREMTEYKTSGTIAMSAPSMQAQ QQAAQKAALLAVAAAQQAQQQQQQQQQQQQTVHHDDHDDDDGEGDDDENQ" polyA_site 6811 /gene="LOC106082136" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgccatacg ttcgttgttg gtacgtacaa catacagtga attttgttta aatatactgc 61 ggaacagcac agcattataa tatacagtgt gtgatcaagt gttttttatt ttggtagaac 121 taccaatgat aaagagaaaa caagtttgta agtgacaacg ttgaaaaaaa gcgcgcctaa 181 atttttcttt tgaaaacaac aacagcaatt aaagtgaatt taagaaagac caaatagaaa 241 ccaagtggat ataaaacagt gtatagttgc cccacaagaa agtgttttcg atatttgaat 301 atcgataaat ctattaagac agaaaccgcc aataaggaag taattggctt attagcagca 361 gcagccaact accagcagaa cacccaccta acaccaacaa caactgtgaa tatagaaggc 421 agcaaattga gtatcatcgt atatgcggga ataaaggaaa aaagcagaca tcttttagaa 481 atacacagca aatatggagc attttcatca aatacagcaa actcttcaac attatcagca 541 acaattggtt gcccagcaac aacaacaggc cgctgccgca gccgctgctg tccagcaaca 601 acaacaacaa ttgcaacagc agcagcagca acagcagcac caacaacaag ttgtcgtcca 661 acagaatcaa cagcaagccc atcaaaataa tgccaacacc acttctggcg ttggcaccca 721 acagcttttc acatacaaaa tggctagtag ttttcccaat ccagccacga caatggccca 781 agttgtcgcc acctcaaatg cagccggtac acctgcctac gattatcgct taaatatggc 841 ccaggccgca gccgccgctg ccgtgcccgg ttcacaatgg tggtattcag cagccaatca 901 aggacaaatc gatgccaata cagccgccca attgcaacag caacaacagc aacagcagca 961 gcaacagcag caacaacagc agcagcaaca gcagcaacaa cagcaacagc agcagcaaca 1021 gcagcaacaa caacagcatc agcagcaaca acagcaattg cagcagcagc aacaacagca 1081 ggcgcaacag caacaacaac agaatgcggc aaatgtaatc gattcaaatt acttggcaaa 1141 gagtggagca acatcgtctt ctacgatcat ttcaaatgtt attgatggca ttgcggaaaa 1201 ggacaataat gttcataagg gcggtgtaaa gccaccacag gatgataagc ctctatccca 1261 aggccatatt aataatataa tacgggctgc tggaggaggt aaaccggatg ctaaaccacg 1321 tggccgtatg acagcctatg cctattttgt acagacatgc cgcgaagaac acaagaaaaa 1381 acatcccgat gagacagtta tatttgcgga attctccaga aagtgtgctg aaagatggaa 1441 gacaatggtt gacaaggaaa agaaacgatt ccacgaaatg gctgaaaaag ataaagctcg 1501 ttatgaactg gaaatgcaaa attatgtgcc tcctaagggt acagttgtgg gtcgaggcaa 1561 aaagaggaaa caaatgaagg atcctaacgc gccgaaacga tcattatctg ccttcttctg 1621 gttctgcaat gagaaacgta atgaagtgaa agctgtaaat cctgaatatg gtgtcggcga 1681 tattgccaaa gagctaggac gcaaatgggc tgatgttgaa cccgaggtta aacagaaata 1741 tgaactaatg gctgaaaagg acaaggcacg atatgaaagg gaaatgacgg agtacaagac 1801 aagtgggaca attgctatgt ctgcaccttc catgcaagcc caacagcaag cggcacaaaa 1861 agctgcctta ctagcagtag ctgccgcaca acaggcccag caacagcagc agcagcagca 1921 acaacaacaa cagaccgtcc atcatgatga ccatgatgat gacgatgggg agggtgatga 1981 tgatgaaaat cagtagattt aataataata ttatgcccaa atgttgctta tgaaatataa 2041 taccaaccac aaccaatcaa ccaaccaacc aacaacacat aatattcaat cccctagaat 2101 cacaacaaca acaacaattc caactacttc aaaaatcaaa acaatcaaac accaatccgg 2161 cacgcgatct ttcttctcct tctatgaatt ttatttcttt tttaacaata atttaatttt 2221 tgtttttgtt cttttttccc ttctcaagag tgacatctag aattaccact ttttctctca 2281 cttttcaaca aaagcagcaa caaagcaaac ttacacaggg catcgaacag aacagaattc 2341 ttgatgctga aattttatga gatgtattgt gatagaatga atatttgaag gtaacttttt 2401 taaaacaaaa aaaaaaaaaa taataattaa tataagtaag cccttaacct atgatgaaga 2461 tttcctgaaa atattcatga aatatgaatt acttgttata tttagcagca acttttgtca 2521 tatatccaaa atcttaacta cctctccttc agcattggaa ttcaaatatg acgccttagc 2581 ctatgctcgt tgttcgttgt cctgtggttt agtgctctta attttgtttt aacaacttct 2641 caaggaccat ttgaccatta ttcaaacatt tgcataacaa tttatattct cttttaagga 2701 aatcagtttc attttttaca atacgcttta atttttgtaa aactcatcaa gaaagaaaaa 2761 ttactgtgta atttttattt aacgagaaaa aatatatata catacatcgt tttttttaat 2821 catgtatttg ttttctgcaa attacataag taactgagtt ataaaagttt atacgacagc 2881 agaaaacttc tcttaaaaaa aaaagaaaac cctaaaaatt ccttttaggt tatttcaaaa 2941 tcatactctc cgattcaacg gcatatacaa atatacatac tatatataat atatattttt 3001 ttgttttaat ttgaactata agataaaaag aaaaaaaaca taactaatat aaatattgta 3061 aagtgaactt ttttttatat agaaaacaac aacaacaaca acaacaatat taaaacgaag 3121 aattatggcg ttttttattt actatttaaa atcattgata gtaatttagg tacagttttc 3181 ttcagagatt tttcacattt tcttatttaa cacccaaaca cattcgccat taaaattatt 3241 tgtttttatt ttcacttctt tgtgtttata gtattttttt gtttgtttaa catttacaaa 3301 gtgtaaaata ttcagcacca acaaccacac ataacaagaa caacacattt ttgcaaatat 3361 catccctttc tctcatacac attcatccac ccactctcta tctctttatc tcgctcccta 3421 tctttttttg tatgggacaa aagaaggccg aaattaaaaa aaatatttta acacaataaa 3481 atccatcata agtacttttc ttattattat accgtatata taataatgaa caaaaatata 3541 ataaactcaa aaatttagaa aataaagaca taagatacat ttttagaaat ataaattaca 3601 aaaaatatga tctttaattt cgtttttcta aataaattgt gtattgagat ttagagaaat 3661 aaatttaaaa taggacttgt atgtgtcttc ccactttcac tgcattgtaa aatgatggca 3721 taagatttgg aatttttgtg ttaatttctc tttgctacca tatgatgggt cgcataggct 3781 agtatgcatt gtgccatttc agggatgata attttggtac tttttttgat ggttttcaaa 3841 catcaaaagt acccgcgcgt cattggtatt tttttcgtga ttagccattt ttaattattt 3901 tcgaggccgc aagaaaggaa agagttttca ttttataatt gaacgttact aaagtttttc 3961 ctgaatataa ttgatgatat aaacctaaaa atgccaacag agcaaaaact ccaatgatga 4021 gggatattac cttatattaa tagattacct tatattaata tatgtatatt acccaatgaa 4081 ccttatacaa aattagagaa ttggttggac ctcatggaaa tcgaatgaat gaacccttcg 4141 ttagcacaca aaggcaaatt ctagtaaata tcaatgagtg cagtcccatt ccagttttaa 4201 actcaatgat aaggggcctc ctttttatag ccgggtccga acggcgtgcc gcagtgctac 4261 atctctctgg agagaaattt tacatggcat agtacctcac aaatgttgcc agcattagga 4321 ggggaaaacc acagctgaaa aatttttttt gatggtctcg ccaggatttg aaccctgccg 4381 ttcagcgtca tatgcggaca tgctaacctc tgagctacaa ttcaagtata tggcggttat 4441 atcgaaatgt gagcttgtgt agaaaatact tagatcatgc gtatcgaaat cgggatccct 4501 gggaacgggg ttgaaagatt ttttttttat ttaaaagtaa tctaatggaa aaatacgctc 4561 tatgtaagag gtaaaatttc ctaattttcg ctctaaatgg gagctatctc aaaatatagt 4621 tcgacttcag actcggaata acaagggcat ttcttatcag tgaactgaaa acaaagaact 4681 gaaggaattt tcgtggccaa agtacacttg cattttatac gagcgaaatg gcctgcgcac 4741 agtacttttt ttttgtattc atcactgtta tgtctttgaa caaattttgt taagatatta 4801 gaggaagtta cggccataaa cagcaaaaaa gtacaacttt tctattgagc cactaagagc 4861 tatattttgt aggttttcat aaaagttcct ttttaaattg gtttcaatat cacctcgttc 4921 acctgttcca cttcaatatc aatttgacac ttttttcgaa ggtctaattt gtgagccatt 4981 tttctattga gccatcgaga ggagccatat tgaaaaaaaa cctccagcag aattttacaa 5041 gctttcaatt atcaaactca aaaatttgct cgctctcacg ctttcgcgct cttctgctgg 5101 caaataaagt attcgaatga tatccagtcc aaatttgcat aattaataac cgttttgcat 5161 attttagcat gtctgcctat gacacagaac gcctgtgtgt tcgatcaatt cagaagtact 5221 cgtatatgtg tgttcgcgca ctcaaaaatt tgtgcacaca ttgttaatga aagtcagtgt 5281 tgctagtatt ggggatttct ccccaaatcg gggatttatt ttcgataatg gggacgaaat 5341 tgttgacatg ggaatttgat agctagcgca ggttcacaaa agaagcttag gtcacttgcc 5401 cagctgatag aatttttcaa ttccagagtt ttagacaaat ctcacaagaa cgtcaaatgc 5461 tttgtttgga gtttaaactt tttttcataa gttgttccct tttgcacatt gtaatcataa 5521 gtcttttgat cttgtggctg ctacacatga taatgcaaat aaaaactaga atatccatta 5581 ggaagtgtcc cacatttttg gatagcctag tgggaatttg cgttgatttc gttgttgttg 5641 tgaaagtgat ttaagctttt aaattcaact cgatgcaaaa attggctatg attttgataa 5701 acatttacac aggcgttcac aaaacttgat gtgtatatga aatagactta tttaccagat 5761 ttcctttaca gaactgtcaa ataatcatat attaaggctt cattacttac ttacttactt 5821 taattggcta tgacagaata tttgttccaa tagccggacg tagaatatcg ttccatgcgc 5881 ctcaatcttc tgagattcta aaatctctga caccaagttt cgtggtgtct cccaccactt 5941 gatctttcca tcgagctttt ggtcttcccg ttttgccttc aaaagacttc ttttccggag 6001 cttcttcatc cattctgaca acatgaccta gccaaagcag ccgttgtatt ttgaaacgcg 6061 tgactaggct atcgtcgtca tacagctcgt ggttaatacg tcgcctatat tctcaattat 6121 cgcaaactgg tccatatatt ttacgaagaa tctttctatc aaatactcca agcactgcct 6181 catctgcttt cacaagtacc catgtttcag aaccatataa caacacgggt agtatcagtg 6241 tcttcattaa aaaaacataa atcggaagta tttacatcaa gttaaacccc gtttacactg 6301 ctaattaaat ctggatttaa ggctctcgtc tgattttata aagggaaaac agatcatcga 6361 gccattaaat ccggatttaa acagcagtgt taacggggtt ttacttgttt tttttattgg 6421 tatttaatat ctgttatcgc atgatatcga taactatcca agacaacttt gcactgaaat 6481 tgtatacaga aaatcgaact tgcactggat tggactaaaa taagacactt gttgtgttct 6541 agtttaatcc aaacctgttc tgttcttact ttcctgtaaa tttttactgg aaaagtaagc 6601 gaacagacct aatatcagtg ttttgagcat tcagctacta agtatttgta aaaaggtacg 6661 cacttcaata aagaaatgga aatttttatt acaaatttgc ccgttggcaa cgcaacttga 6721 gttgggttgc tacccctaag tccctttttc ttagtacaat acagtgcaaa ggatatgtta 6781 tcgaatgtta ttgcatgcca tagataacta t