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LOCUS XM_059367025 6818 bp mRNA linear INV 02-SEP-2023 (LOC106082136), transcript variant X2, mRNA. ACCESSION XM_059367025 VERSION XM_059367025.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6818 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6818 /gene="LOC106082136" /note="high mobility group protein DSP1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106082136" CDS 501..2003 /gene="LOC106082136" /codon_start=1 /product="high mobility group protein DSP1 isoform X1" /protein_id="XP_059223008.1" /db_xref="GeneID:106082136" /translation="MEHFHQIQQTLQHYQQQLVAQQQQQAAAAAAAVQQQQQQLQQQQ QQQQHQQQVVVQQNQQQAHQNNANTTSGVGTQQLFTYKMASSFPNPATTMAQVVATSN AAGTPAYDYRLNMAQAAAAAAVPGSQWWYSAANQGQIDANTAAQLQQQQQQQQQQQQQ QQQQQQQQQQQQQQQQQQQQQHQQQQQQLQQQQQQQAQQQQQQNAANVIDSNYLAKSG ATSSSTIISNVIDGIAEKDNNVHKGGVKPPQDDKPLSQGHINNIIRAAGGGKPDAKPR GRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKDK ARYELEMQNYVPPKGTVVGRGKKRKQMKDPNAPKRSLSAFFWFCNEKRNEVKAVNPEY GVGDIAKELGRKWADVEPEVKQKYELMAEKDKARYEREMTEYKTSGTIAMSAPSMQAQ QQAAQKAALLAVAAAQQAQQQQQQQQQQQQTVHHDDHDDDDGEGDDDENQ" polyA_site 6818 /gene="LOC106082136" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcttggaaat aagttctttt ttagcaggcc aagctatcaa ggcataaaga aactcaattc 61 aatagcgttt gaaggcaatt gccatacgtt cgttgttgtg atcaagtgtt ttttattttg 121 gtagaactac caatgataaa gagaaaacaa gtttgtaagt gacaacgttg aaaaaaagcg 181 cgcctaaatt tttcttttga aaacaacaac agcaattaaa gtgaatttaa gaaagaccaa 241 atagaaacca agtggatata aaacagtgta tagttgcccc acaagaaagt gttttcgata 301 tttgaatatc gataaatcta ttaagacaga aaccgccaat aaggaagtaa ttggcttatt 361 agcagcagca gccaactacc agcagaacac ccacctaaca ccaacaacaa ctgtgaatat 421 agaaggcagc aaattgagta tcatcgtata tgcgggaata aaggaaaaaa gcagacatct 481 tttagaaata cacagcaaat atggagcatt ttcatcaaat acagcaaact cttcaacatt 541 atcagcaaca attggttgcc cagcaacaac aacaggccgc tgccgcagcc gctgctgtcc 601 agcaacaaca acaacaattg caacagcagc agcagcaaca gcagcaccaa caacaagttg 661 tcgtccaaca gaatcaacag caagcccatc aaaataatgc caacaccact tctggcgttg 721 gcacccaaca gcttttcaca tacaaaatgg ctagtagttt tcccaatcca gccacgacaa 781 tggcccaagt tgtcgccacc tcaaatgcag ccggtacacc tgcctacgat tatcgcttaa 841 atatggccca ggccgcagcc gccgctgccg tgcccggttc acaatggtgg tattcagcag 901 ccaatcaagg acaaatcgat gccaatacag ccgcccaatt gcaacagcaa caacagcaac 961 agcagcagca acagcagcaa caacagcagc agcaacagca gcaacaacag caacagcagc 1021 agcaacagca gcaacaacaa cagcatcagc agcaacaaca gcaattgcag cagcagcaac 1081 aacagcaggc gcaacagcaa caacaacaga atgcggcaaa tgtaatcgat tcaaattact 1141 tggcaaagag tggagcaaca tcgtcttcta cgatcatttc aaatgttatt gatggcattg 1201 cggaaaagga caataatgtt cataagggcg gtgtaaagcc accacaggat gataagcctc 1261 tatcccaagg ccatattaat aatataatac gggctgctgg aggaggtaaa ccggatgcta 1321 aaccacgtgg ccgtatgaca gcctatgcct attttgtaca gacatgccgc gaagaacaca 1381 agaaaaaaca tcccgatgag acagttatat ttgcggaatt ctccagaaag tgtgctgaaa 1441 gatggaagac aatggttgac aaggaaaaga aacgattcca cgaaatggct gaaaaagata 1501 aagctcgtta tgaactggaa atgcaaaatt atgtgcctcc taagggtaca gttgtgggtc 1561 gaggcaaaaa gaggaaacaa atgaaggatc ctaacgcgcc gaaacgatca ttatctgcct 1621 tcttctggtt ctgcaatgag aaacgtaatg aagtgaaagc tgtaaatcct gaatatggtg 1681 tcggcgatat tgccaaagag ctaggacgca aatgggctga tgttgaaccc gaggttaaac 1741 agaaatatga actaatggct gaaaaggaca aggcacgata tgaaagggaa atgacggagt 1801 acaagacaag tgggacaatt gctatgtctg caccttccat gcaagcccaa cagcaagcgg 1861 cacaaaaagc tgccttacta gcagtagctg ccgcacaaca ggcccagcaa cagcagcagc 1921 agcagcaaca acaacaacag accgtccatc atgatgacca tgatgatgac gatggggagg 1981 gtgatgatga tgaaaatcag tagatttaat aataatatta tgcccaaatg ttgcttatga 2041 aatataatac caaccacaac caatcaacca accaaccaac aacacataat attcaatccc 2101 ctagaatcac aacaacaaca acaattccaa ctacttcaaa aatcaaaaca atcaaacacc 2161 aatccggcac gcgatctttc ttctccttct atgaatttta tttctttttt aacaataatt 2221 taatttttgt ttttgttctt ttttcccttc tcaagagtga catctagaat taccactttt 2281 tctctcactt ttcaacaaaa gcagcaacaa agcaaactta cacagggcat cgaacagaac 2341 agaattcttg atgctgaaat tttatgagat gtattgtgat agaatgaata tttgaaggta 2401 acttttttaa aacaaaaaaa aaaaaaataa taattaatat aagtaagccc ttaacctatg 2461 atgaagattt cctgaaaata ttcatgaaat atgaattact tgttatattt agcagcaact 2521 tttgtcatat atccaaaatc ttaactacct ctccttcagc attggaattc aaatatgacg 2581 ccttagccta tgctcgttgt tcgttgtcct gtggtttagt gctcttaatt ttgttttaac 2641 aacttctcaa ggaccatttg accattattc aaacatttgc ataacaattt atattctctt 2701 ttaaggaaat cagtttcatt ttttacaata cgctttaatt tttgtaaaac tcatcaagaa 2761 agaaaaatta ctgtgtaatt tttatttaac gagaaaaaat atatatacat acatcgtttt 2821 ttttaatcat gtatttgttt tctgcaaatt acataagtaa ctgagttata aaagtttata 2881 cgacagcaga aaacttctct taaaaaaaaa agaaaaccct aaaaattcct tttaggttat 2941 ttcaaaatca tactctccga ttcaacggca tatacaaata tacatactat atataatata 3001 tatttttttg ttttaatttg aactataaga taaaaagaaa aaaaacataa ctaatataaa 3061 tattgtaaag tgaacttttt tttatataga aaacaacaac aacaacaaca acaatattaa 3121 aacgaagaat tatggcgttt tttatttact atttaaaatc attgatagta atttaggtac 3181 agttttcttc agagattttt cacattttct tatttaacac ccaaacacat tcgccattaa 3241 aattatttgt ttttattttc acttctttgt gtttatagta tttttttgtt tgtttaacat 3301 ttacaaagtg taaaatattc agcaccaaca accacacata acaagaacaa cacatttttg 3361 caaatatcat ccctttctct catacacatt catccaccca ctctctatct ctttatctcg 3421 ctccctatct ttttttgtat gggacaaaag aaggccgaaa ttaaaaaaaa tattttaaca 3481 caataaaatc catcataagt acttttctta ttattatacc gtatatataa taatgaacaa 3541 aaatataata aactcaaaaa tttagaaaat aaagacataa gatacatttt tagaaatata 3601 aattacaaaa aatatgatct ttaatttcgt ttttctaaat aaattgtgta ttgagattta 3661 gagaaataaa tttaaaatag gacttgtatg tgtcttccca ctttcactgc attgtaaaat 3721 gatggcataa gatttggaat ttttgtgtta atttctcttt gctaccatat gatgggtcgc 3781 ataggctagt atgcattgtg ccatttcagg gatgataatt ttggtacttt ttttgatggt 3841 tttcaaacat caaaagtacc cgcgcgtcat tggtattttt ttcgtgatta gccattttta 3901 attattttcg aggccgcaag aaaggaaaga gttttcattt tataattgaa cgttactaaa 3961 gtttttcctg aatataattg atgatataaa cctaaaaatg ccaacagagc aaaaactcca 4021 atgatgaggg atattacctt atattaatag attaccttat attaatatat gtatattacc 4081 caatgaacct tatacaaaat tagagaattg gttggacctc atggaaatcg aatgaatgaa 4141 cccttcgtta gcacacaaag gcaaattcta gtaaatatca atgagtgcag tcccattcca 4201 gttttaaact caatgataag gggcctcctt tttatagccg ggtccgaacg gcgtgccgca 4261 gtgctacatc tctctggaga gaaattttac atggcatagt acctcacaaa tgttgccagc 4321 attaggaggg gaaaaccaca gctgaaaaat tttttttgat ggtctcgcca ggatttgaac 4381 cctgccgttc agcgtcatat gcggacatgc taacctctga gctacaattc aagtatatgg 4441 cggttatatc gaaatgtgag cttgtgtaga aaatacttag atcatgcgta tcgaaatcgg 4501 gatccctggg aacggggttg aaagattttt tttttattta aaagtaatct aatggaaaaa 4561 tacgctctat gtaagaggta aaatttccta attttcgctc taaatgggag ctatctcaaa 4621 atatagttcg acttcagact cggaataaca agggcatttc ttatcagtga actgaaaaca 4681 aagaactgaa ggaattttcg tggccaaagt acacttgcat tttatacgag cgaaatggcc 4741 tgcgcacagt actttttttt tgtattcatc actgttatgt ctttgaacaa attttgttaa 4801 gatattagag gaagttacgg ccataaacag caaaaaagta caacttttct attgagccac 4861 taagagctat attttgtagg ttttcataaa agttcctttt taaattggtt tcaatatcac 4921 ctcgttcacc tgttccactt caatatcaat ttgacacttt tttcgaaggt ctaatttgtg 4981 agccattttt ctattgagcc atcgagagga gccatattga aaaaaaacct ccagcagaat 5041 tttacaagct ttcaattatc aaactcaaaa atttgctcgc tctcacgctt tcgcgctctt 5101 ctgctggcaa ataaagtatt cgaatgatat ccagtccaaa tttgcataat taataaccgt 5161 tttgcatatt ttagcatgtc tgcctatgac acagaacgcc tgtgtgttcg atcaattcag 5221 aagtactcgt atatgtgtgt tcgcgcactc aaaaatttgt gcacacattg ttaatgaaag 5281 tcagtgttgc tagtattggg gatttctccc caaatcgggg atttattttc gataatgggg 5341 acgaaattgt tgacatggga atttgatagc tagcgcaggt tcacaaaaga agcttaggtc 5401 acttgcccag ctgatagaat ttttcaattc cagagtttta gacaaatctc acaagaacgt 5461 caaatgcttt gtttggagtt taaacttttt ttcataagtt gttccctttt gcacattgta 5521 atcataagtc ttttgatctt gtggctgcta cacatgataa tgcaaataaa aactagaata 5581 tccattagga agtgtcccac atttttggat agcctagtgg gaatttgcgt tgatttcgtt 5641 gttgttgtga aagtgattta agcttttaaa ttcaactcga tgcaaaaatt ggctatgatt 5701 ttgataaaca tttacacagg cgttcacaaa acttgatgtg tatatgaaat agacttattt 5761 accagatttc ctttacagaa ctgtcaaata atcatatatt aaggcttcat tacttactta 5821 cttactttaa ttggctatga cagaatattt gttccaatag ccggacgtag aatatcgttc 5881 catgcgcctc aatcttctga gattctaaaa tctctgacac caagtttcgt ggtgtctccc 5941 accacttgat ctttccatcg agcttttggt cttcccgttt tgccttcaaa agacttcttt 6001 tccggagctt cttcatccat tctgacaaca tgacctagcc aaagcagccg ttgtattttg 6061 aaacgcgtga ctaggctatc gtcgtcatac agctcgtggt taatacgtcg cctatattct 6121 caattatcgc aaactggtcc atatatttta cgaagaatct ttctatcaaa tactccaagc 6181 actgcctcat ctgctttcac aagtacccat gtttcagaac catataacaa cacgggtagt 6241 atcagtgtct tcattaaaaa aacataaatc ggaagtattt acatcaagtt aaaccccgtt 6301 tacactgcta attaaatctg gatttaaggc tctcgtctga ttttataaag ggaaaacaga 6361 tcatcgagcc attaaatccg gatttaaaca gcagtgttaa cggggtttta cttgtttttt 6421 ttattggtat ttaatatctg ttatcgcatg atatcgataa ctatccaaga caactttgca 6481 ctgaaattgt atacagaaaa tcgaacttgc actggattgg actaaaataa gacacttgtt 6541 gtgttctagt ttaatccaaa cctgttctgt tcttactttc ctgtaaattt ttactggaaa 6601 agtaagcgaa cagacctaat atcagtgttt tgagcattca gctactaagt atttgtaaaa 6661 aggtacgcac ttcaataaag aaatggaaat ttttattaca aatttgcccg ttggcaacgc 6721 aacttgagtt gggttgctac ccctaagtcc ctttttctta gtacaataca gtgcaaagga 6781 tatgttatcg aatgttattg catgccatag ataactat